PDB Chemical Component AD2

Ideal Model

Chemical Description

Name 2'-DEOXY-ADENOSINE-3'-5'-DIPHOSPHATE
Formula C10 H15 N5 O9 P2
Formal charge 0
Molecular weight 411.202 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 41
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3
Bond count 43
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxyadenosine 3',5'-bis(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(6-aminopurin-9-yl)-3-phosphonooxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@H]3C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O3
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O3
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)OP(=O)(O)O)N
InChI descriptor InChI=1S/C10H15N5O9P2/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(24-26(19,20)21)6(23-7)2-22-25(16,17)18/h3-7H,1-2H2,(H2,11,12,13)(H2,16,17,18)(H2,19,20,21)/t5-,6+,7+/m0/s1
InChIKey descriptor GOZKRKUVKAXOEP-RRKCRQDMSA-N

Status Information

Last modified 2011-06-04
Created 2002-03-06
Release status REL
Model PDB code 1L2B
Processing site RCSB