PDB Chemical Component AD1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AD1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAG |
NAM |
1.474 |
1.462 |
| CAG |
CAL |
1.525 |
1.536 |
| CAG |
HAG1 |
1.100 |
1.091 |
| CAG |
HAG2 |
1.100 |
1.090 |
| NAM |
CAI |
1.353 |
1.376 |
| CAA |
NAM |
1.493 |
1.465 |
| CAA |
HAA1 |
1.100 |
1.090 |
| CAA |
HAA2 |
1.100 |
1.090 |
| CAA |
HAA3 |
1.100 |
1.090 |
| CAI |
CAH |
1.439 |
1.469 |
| CAI |
CAF |
1.435 |
1.370 |
| CAF |
CAK |
1.432 |
1.405 |
| CAF |
HAF |
1.080 |
1.080 |
| CAK |
CAJ |
1.448 |
1.500 |
| CAK |
OAC |
1.232 |
1.216 |
| CAJ |
OAB |
1.233 |
1.213 |
| CAE |
CAJ |
1.430 |
1.474 |
| CAE |
HAE |
1.080 |
1.079 |
| CAH |
CAE |
1.426 |
1.344 |
| CAL |
CAH |
1.533 |
1.514 |
| CAL |
HAL |
1.100 |
1.091 |
| OAD |
CAL |
1.443 |
1.429 |
| OAD |
HOAD |
0.950 |
0.967 |
Bond Angles for AD1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAM |
CAG |
CAL |
101.5 |
106.6 |
| NAM |
CAG |
HAG1 |
112.2 |
110.0 |
| NAM |
CAG |
HAG2 |
113.9 |
110.1 |
| CAG |
NAM |
CAI |
111.0 |
111.1 |
| CAL |
CAG |
HAG1 |
112.2 |
110.0 |
| CAL |
CAG |
HAG2 |
113.9 |
110.0 |
| CAG |
CAL |
CAH |
101.9 |
104.6 |
| CAG |
CAL |
HAL |
115.1 |
110.4 |
| HAG1 |
CAG |
HAG2 |
103.5 |
110.1 |
| CAA |
NAM |
CAI |
126.3 |
124.5 |
| NAM |
CAI |
CAH |
107.8 |
110.4 |
| NAM |
CAI |
CAF |
132.1 |
129.0 |
| HAA1 |
CAA |
HAA2 |
109.4 |
109.4 |
| HAA1 |
CAA |
HAA3 |
109.5 |
109.5 |
| HAA2 |
CAA |
HAA3 |
109.5 |
109.5 |
| CAF |
CAI |
CAH |
120.0 |
120.6 |
| CAI |
CAH |
CAE |
121.5 |
121.7 |
| CAI |
CAF |
CAK |
118.8 |
121.1 |
| CAI |
CAF |
HAF |
120.6 |
119.4 |
| CAK |
CAF |
HAF |
120.6 |
119.4 |
| CAF |
CAK |
CAJ |
120.6 |
118.9 |
| CAF |
CAK |
OAC |
117.6 |
120.6 |
| OAC |
CAK |
CAJ |
121.7 |
120.5 |
| CAK |
CAJ |
OAB |
121.9 |
121.0 |
| CAH |
CAE |
HAE |
120.7 |
120.3 |
| OAD |
CAL |
HAL |
105.9 |
110.5 |
Torsion Angles for AD1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAL |
CAG |
NAM |
HAG1 |
240.0 |
240.7 |
| CAL |
CAG |
NAM |
HAG2 |
122.8 |
119.3 |
| NAM |
CAG |
CAL |
CAH |
331.3 |
0.0 |
| NAM |
CAG |
CAL |
HAL |
93.9 |
118.7 |
| HAG1 |
CAG |
NAM |
HAG2 |
242.8 |
238.5 |
| CAA |
NAM |
CAG |
CAI |
180.7 |
180.0 |
| CAG |
NAM |
CAI |
CAH |
339.4 |
359.9 |
| CAG |
NAM |
CAI |
CAF |
159.6 |
180.0 |
| NAM |
CAG |
CAL |
HAG1 |
120.0 |
119.3 |
| NAM |
CAG |
CAL |
HAG2 |
237.2 |
240.7 |
| CAL |
CAG |
NAM |
CAI |
32.0 |
0.0 |
| HAG1 |
CAG |
CAL |
HAG2 |
117.2 |
121.4 |
| OAD |
CAL |
CAG |
HAL |
119.1 |
122.5 |
| NAM |
CAG |
HAG1 |
CAL |
246.4 |
242.8 |
| NAM |
CAG |
HAG1 |
HAG2 |
123.2 |
121.5 |
| HAG1 |
CAG |
NAM |
CAI |
152.0 |
119.3 |
| CAL |
CAG |
HAG1 |
HAG2 |
236.8 |
238.6 |
| HAG1 |
CAG |
CAL |
CAH |
211.3 |
240.7 |
| HAG1 |
CAG |
CAL |
HAL |
333.9 |
359.4 |
| NAM |
CAG |
HAG2 |
CAL |
115.8 |
117.2 |
| NAM |
CAG |
HAG2 |
HAG1 |
237.9 |
238.6 |
| HAG2 |
CAG |
NAM |
CAI |
269.1 |
240.7 |
| CAL |
CAG |
HAG2 |
HAG1 |
122.1 |
121.4 |
| HAG2 |
CAG |
CAL |
CAH |
94.1 |
119.3 |
| HAG2 |
CAG |
CAL |
HAL |
216.7 |
238.0 |
| CAI |
NAM |
CAG |
CAL |
32.0 |
0.0 |
| CAI |
NAM |
CAG |
HAG1 |
152.0 |
119.3 |
| CAI |
NAM |
CAG |
HAG2 |
269.1 |
240.7 |
| CAF |
CAI |
NAM |
CAH |
180.2 |
180.1 |
| NAM |
CAI |
CAH |
CAE |
180.1 |
180.0 |
| NAM |
CAI |
CAF |
CAK |
179.9 |
180.0 |
| NAM |
CAI |
CAF |
HAF |
359.8 |
359.9 |
| CAA |
NAM |
CAG |
CAL |
212.6 |
180.0 |
| CAA |
NAM |
CAG |
HAG1 |
332.6 |
299.3 |
| CAA |
NAM |
CAG |
HAG2 |
89.8 |
60.7 |
| CAG |
NAM |
CAA |
CAI |
179.2 |
180.0 |
| CAA |
NAM |
CAI |
CAH |
158.7 |
180.0 |
| CAA |
NAM |
CAI |
CAF |
338.9 |
0.1 |
| HAA1 |
CAA |
NAM |
CAI |
332.4 |
270.0 |
| HAA2 |
CAA |
HAA1 |
HAA3 |
120.0 |
120.0 |
| HAA2 |
CAA |
NAM |
CAI |
92.4 |
30.0 |
| HAA1 |
CAA |
HAA2 |
HAA3 |
240.0 |
240.0 |
| HAA3 |
CAA |
NAM |
CAI |
212.4 |
150.0 |
| HAA1 |
CAA |
HAA3 |
HAA2 |
120.0 |
120.0 |
| CAG |
CAL |
CAH |
CAI |
18.7 |
359.9 |
| NAM |
CAI |
CAH |
CAF |
180.1 |
180.1 |
| CAH |
CAI |
CAF |
CAK |
0.0 |
0.1 |
| CAH |
CAI |
CAF |
HAF |
180.0 |
180.0 |
| CAI |
CAH |
CAE |
HAE |
180.1 |
180.0 |
| NAM |
CAI |
CAF |
CAH |
179.8 |
179.9 |
| CAF |
CAI |
CAH |
CAE |
360.0 |
359.9 |
| CAK |
CAF |
CAI |
HAF |
180.0 |
180.1 |
| CAI |
CAF |
CAK |
CAJ |
359.9 |
359.9 |
| CAI |
CAF |
CAK |
OAC |
180.1 |
180.0 |
| CAK |
CAF |
CAI |
CAH |
0.0 |
0.1 |
| CAI |
CAF |
CAK |
HAF |
180.0 |
179.9 |
| OAC |
CAK |
CAF |
CAJ |
180.2 |
180.1 |
| CAF |
CAK |
CAJ |
OAB |
180.2 |
180.0 |
| HAF |
CAF |
CAI |
CAH |
180.0 |
180.0 |
| CAI |
CAF |
HAF |
CAK |
180.0 |
180.1 |
| HAF |
CAF |
CAK |
CAJ |
179.9 |
180.0 |
| HAF |
CAF |
CAK |
OAC |
0.1 |
0.1 |
| CAJ |
CAK |
CAF |
HAF |
179.9 |
180.0 |
| CAF |
CAK |
CAJ |
OAC |
180.2 |
180.1 |
| OAC |
CAK |
CAF |
HAF |
0.1 |
0.1 |
| CAF |
CAK |
OAC |
CAJ |
179.8 |
179.9 |
| OAC |
CAK |
CAJ |
OAB |
0.0 |
360.0 |
| CAI |
CAH |
CAE |
CAJ |
0.1 |
0.0 |
| CAG |
CAL |
CAH |
CAE |
198.7 |
180.0 |
| CAH |
CAL |
CAG |
HAG1 |
211.3 |
240.7 |
| CAH |
CAL |
CAG |
HAG2 |
94.1 |
119.3 |
| CAG |
CAL |
CAH |
HAL |
124.0 |
118.7 |
| CAL |
CAH |
CAE |
HAE |
0.0 |
360.0 |
| HAL |
CAL |
CAG |
HAG1 |
333.9 |
359.4 |
| HAL |
CAL |
CAG |
HAG2 |
216.7 |
238.0 |
| CAG |
CAL |
HAL |
CAH |
243.6 |
244.9 |
| OAD |
CAL |
CAG |
HAG1 |
93.0 |
121.9 |
| OAD |
CAL |
CAG |
HAG2 |
335.8 |
0.5 |
| CAG |
CAL |
OAD |
HAL |
235.4 |
237.6 |
| HOAD |
OAD |
CAL |
HAL |
109.1 |
302.4 |