PDB Chemical Component ACQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ACQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.509 1.480
PG O2G 1.510 1.609
PG O3G 1.629 1.610
PG C3B 1.756 1.823
O2G HOG2 0.950 0.967
O3G PD 1.630 1.610
PB O1B 1.492 1.480
PB O2B 1.506 1.609
PB C3B 1.790 1.822
PB O3A 1.535 1.609
O2B HOB2 0.950 0.967
C3B H3B1 1.116 1.090
C3B H3B2 1.115 1.089
PA O1A 1.482 1.481
PA O2A 1.475 1.610
PA O3A 1.543 1.610
PA O5' 1.595 1.608
O2A HOA2 0.950 0.966
O5' C5' 1.459 1.429
C5' C4' 1.505 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.116 1.090
C4' O4' 1.457 1.444
C4' C3' 1.482 1.545
C4' H4' 1.115 1.090
O4' C1' 1.461 1.444
C3' O3' 1.436 1.429
C3' C2' 1.497 1.547
C3' H3' 1.114 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.438 1.428
C2' C1' 1.559 1.544
C2' H2' 1.115 1.089
O2' HO2' 0.951 0.967
C1' N9 1.518 1.464
C1' H1' 1.115 1.091
N9 C8 1.376 1.362
N9 C4 1.371 1.372
C8 N7 1.315 1.301
C8 H8 1.103 1.080
N7 C5 1.361 1.354
C5 C6 1.425 1.405
C5 C4 1.399 1.405
C6 N6 1.351 1.384
C6 N1 1.372 1.329
N6 HN61 1.019 0.970
N6 HN62 1.020 0.970
N1 C2 1.349 1.321
C2 N3 1.357 1.316
C2 H2 1.103 1.080
N3 C4 1.390 1.328
PD O1D 1.511 1.480
PD O2D 1.522 1.610
PD O3D 1.521 1.609
O2D HOD2 0.951 0.967
O3D HOD3 0.951 0.967

Bond Angles for ACQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 114.2 109.5
O1G PG O3G 115.3 109.5
O1G PG C3B 108.4 109.5
O2G PG O3G 112.2 109.5
O2G PG C3B 101.6 109.5
PG O2G HOG2 114.2 106.8
O3G PG C3B 103.5 109.5
PG O3G PD 143.0 106.8
PG C3B PB 131.3 109.5
PG C3B H3B1 104.6 109.5
PG C3B H3B2 104.6 109.5
O3G PD O1D 103.0 109.5
O3G PD O2D 108.7 109.5
O3G PD O3D 108.8 109.5
O1B PB O2B 120.0 109.4
O1B PB C3B 105.3 109.4
O1B PB O3A 109.1 109.5
O2B PB C3B 112.8 109.5
O2B PB O3A 111.5 109.5
PB O2B HOB2 119.9 106.8
C3B PB O3A 95.3 109.5
PB C3B H3B1 104.7 109.4
PB C3B H3B2 104.7 109.5
PB O3A PA 134.7 106.9
H3B1 C3B H3B2 104.3 109.5
O1A PA O2A 116.7 109.4
O1A PA O3A 107.2 109.4
O1A PA O5' 111.9 109.5
O2A PA O3A 116.0 109.4
O2A PA O5' 108.3 109.5
PA O2A HOA2 116.7 106.8
O3A PA O5' 94.6 109.5
PA O5' C5' 119.7 106.8
O5' C5' C4' 110.3 109.5
O5' C5' H5'1 111.9 109.5
O5' C5' H5'2 111.9 109.4
C4' C5' H5'1 111.9 109.5
C4' C5' H5'2 111.9 109.5
C5' C4' O4' 108.0 110.4
C5' C4' C3' 113.7 110.5
C5' C4' H4' 106.5 110.3
H5'1 C5' H5'2 98.5 109.4
O4' C4' C3' 105.8 104.8
O4' C4' H4' 114.3 110.4
C4' O4' C1' 110.3 105.3
C3' C4' H4' 108.7 110.4
C4' C3' O3' 109.1 110.5
C4' C3' C2' 103.2 104.1
C4' C3' H3' 115.3 110.5
O4' C1' C2' 103.4 104.9
O4' C1' N9 107.7 110.5
O4' C1' H1' 117.2 110.4
O3' C3' C2' 113.8 110.5
O3' C3' H3' 105.0 110.5
C3' O3' HO3' 109.1 106.8
C2' C3' H3' 110.7 110.6
C3' C2' O2' 111.8 110.5
C3' C2' C1' 104.6 104.0
C3' C2' H2' 109.8 110.5
O2' C2' C1' 104.9 110.9
O2' C2' H2' 109.5 110.4
C2' O2' HO2' 111.8 106.9
C1' C2' H2' 116.2 110.4
C2' C1' N9 116.7 110.3
C2' C1' H1' 108.3 110.3
N9 C1' H1' 104.1 110.3
C1' N9 C8 129.8 126.2
C1' N9 C4 126.3 126.3
C8 N9 C4 103.9 107.4
N9 C8 N7 115.9 110.0
N9 C8 H8 124.1 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 127.4 134.9
N7 C8 H8 120.0 125.0
C8 N7 C5 102.4 109.4
N7 C5 C6 132.0 134.7
N7 C5 C4 111.9 107.1
C6 C5 C4 116.1 118.1
C5 C6 N6 121.2 120.7
C5 C6 N1 118.2 118.5
C5 C4 N3 126.7 119.1
N6 C6 N1 120.6 120.7
C6 N6 HN61 121.1 120.0
C6 N6 HN62 108.0 120.0
C6 N1 C2 120.3 121.1
HN61 N6 HN62 108.1 120.0
N1 C2 N3 127.2 122.5
N1 C2 H2 116.1 118.7
N3 C2 H2 116.7 118.8
C2 N3 C4 111.4 120.7
O1D PD O2D 113.0 109.5
O1D PD O3D 112.7 109.5
O2D PD O3D 110.2 109.5
PD O2D HOD2 108.7 106.8
PD O3D HOD3 108.8 106.8

Torsion Angles for ACQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 227.8 240.0
O2G PG O1G C3B 112.5 120.0
O1G PG O2G HOG2 180.0 180.0
O3G PG O1G C3B 244.6 240.0
O1G PG O3G PD 17.1 300.0
O1G PG C3B PB 64.4 59.9
O1G PG C3B H3B1 189.7 300.1
O1G PG C3B H3B2 299.1 180.0
O1G PG O2G O3G 133.6 120.0
O1G PG O2G C3B 243.5 240.0
O3G PG O2G C3B 109.9 120.0
O2G PG O3G PD 150.2 60.0
O2G PG C3B PB 303.7 299.9
O2G PG C3B H3B1 69.0 180.1
O2G PG C3B H3B2 178.4 60.0
O1G PG O3G O2G 226.9 240.0
O1G PG O3G C3B 118.1 120.0
O2G PG O3G C3B 251.2 240.0
O3G PG O2G HOG2 46.4 60.0
O3G PG C3B PB 187.3 179.9
O3G PG C3B H3B1 312.5 60.1
O3G PG C3B H3B2 62.0 300.0
PG O3G PD O1D 14.0 60.0
PG O3G PD O2D 134.2 180.0
PG O3G PD O3D 254.2 300.0
O1G PG C3B O2G 120.7 120.0
O1G PG C3B O3G 237.1 240.0
O2G PG C3B O3G 116.5 120.0
C3B PG O2G HOG2 296.4 300.0
C3B PG O3G PD 259.0 180.0
O1B PB C3B PG 65.5 60.0
O2B PB C3B PG 293.0 300.1
PG C3B PB O3A 177.0 180.0
PB C3B PG H3B1 234.7 119.9
PB C3B PG H3B2 125.3 239.9
H3B1 C3B PG H3B2 250.6 120.0
HOG2 O2G PG O3G 46.4 60.0
HOG2 O2G PG C3B 296.4 300.0
PD O3G PG C3B 259.0 180.0
O1D PD O3G O2D 239.9 240.0
O1D PD O3G O3D 119.8 120.0
O2D PD O3G O3D 240.0 239.9
O3G PD O2D HOD2 180.0 180.0
O3G PD O3D HOD3 180.1 299.9
PG C3B PB O1B 65.5 60.0
O2B PB O1B C3B 128.4 120.0
O2B PB O1B O3A 229.7 240.0
O1B PB O2B HOB2 180.0 180.1
C3B PB O1B O3A 101.3 120.0
O1B PB C3B H3B1 300.3 180.0
O1B PB C3B H3B2 190.8 299.9
O1B PB O3A PA 352.6 300.0
PG C3B PB O2B 293.0 300.1
O1B PB O2B C3B 235.1 240.1
O1B PB O2B O3A 129.3 120.0
C3B PB O2B O3A 254.2 239.9
O2B PB C3B H3B1 167.7 60.0
O2B PB C3B H3B2 58.3 180.0
O2B PB O3A PA 127.4 60.0
PG C3B PB H3B1 125.3 240.1
PG C3B PB H3B2 234.7 120.1
O1B PB C3B O2B 132.6 119.9
O1B PB C3B O3A 248.5 240.0
O2B PB C3B O3A 115.9 120.1
C3B PB O2B HOB2 304.9 300.0
C3B PB O3A PA 244.4 180.1
H3B1 C3B PB H3B2 109.4 240.0
O1B PB O3A O2B 225.2 240.0
O1B PB O3A C3B 108.2 119.9
O2B PB O3A C3B 243.0 239.9
O3A PB O2B HOB2 50.8 60.1
O3A PB C3B H3B1 51.8 299.9
O3A PB C3B H3B2 302.3 59.9
O1A PA O3A PB 60.2 60.0
O2A PA O3A PB 287.8 300.1
PB O3A PA O5' 174.9 180.0
HOB2 O2B PB C3B 304.9 300.0
HOB2 O2B PB O3A 50.8 60.1
PG C3B H3B1 PB 219.4 120.0
PG C3B H3B1 H3B2 109.7 239.9
H3B1 C3B PB O3A 51.8 299.9
PB C3B H3B1 H3B2 250.3 120.0
PG C3B H3B2 PB 140.6 239.9
PG C3B H3B2 H3B1 250.4 120.0
H3B2 C3B PB O3A 302.3 59.9
PB C3B H3B2 H3B1 109.7 240.1
PB O3A PA O1A 60.2 60.0
O2A PA O1A O3A 132.0 119.9
O2A PA O1A O5' 234.5 240.0
O1A PA O2A HOA2 180.0 180.0
O3A PA O1A O5' 102.4 120.1
O1A PA O5' C5' 48.0 300.0
PB O3A PA O2A 287.8 300.1
O1A PA O2A O3A 232.1 240.1
O1A PA O2A O5' 127.4 120.1
O3A PA O2A O5' 255.2 240.0
O2A PA O5' C5' 178.0 60.0
O1A PA O3A O2A 132.4 119.9
O1A PA O3A O5' 245.3 239.9
O2A PA O3A O5' 112.9 120.0
O3A PA O2A HOA2 307.9 299.9
O3A PA O5' C5' 297.3 180.0
O1A PA O5' O2A 230.0 240.0
O1A PA O5' O3A 110.7 120.0
O2A PA O5' O3A 240.7 240.0
O5' PA O2A HOA2 52.7 60.0
PA O5' C5' C4' 162.9 180.0
PA O5' C5' H5'1 288.1 59.9
PA O5' C5' H5'2 37.6 300.0
HOA2 O2A PA O3A 307.9 299.9
HOA2 O2A PA O5' 52.7 60.0
C4' C5' O5' H5'1 234.7 120.1
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 303.0 61.4
O5' C5' C4' C3' 60.1 176.9
O5' C5' C4' H4' 179.8 299.2
H5'1 C5' O5' H5'2 250.5 119.9
O5' C5' C4' H5'1 125.3 239.9
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.4 240.1
O4' C4' C5' C3' 242.9 244.5
O4' C4' C5' H4' 123.2 122.3
C5' C4' O4' C1' 142.1 159.5
C3' C4' C5' H4' 240.3 237.7
C5' C4' C3' O3' 86.4 98.3
C5' C4' C3' C2' 207.7 217.0
C5' C4' C3' H3' 328.6 335.8
O5' C5' H5'1 C4' 235.6 120.1
O5' C5' H5'1 H5'2 117.8 240.0
C4' C5' H5'1 H5'2 242.2 119.9
H5'1 C5' C4' O4' 177.7 181.5
H5'1 C5' C4' C3' 294.8 297.0
H5'1 C5' C4' H4' 54.5 59.3
O5' C5' H5'2 C4' 124.4 240.0
O5' C5' H5'2 H5'1 242.2 120.0
C4' C5' H5'2 H5'1 117.8 240.0
H5'2 C5' C4' O4' 68.3 301.4
H5'2 C5' C4' C3' 185.4 56.9
H5'2 C5' C4' H4' 305.1 179.2
O4' C4' C5' H5'1 177.7 181.5
O4' C4' C5' H5'2 68.3 301.4
C5' C4' O4' C3' 122.1 119.0
C5' C4' O4' H4' 241.7 237.8
C3' C4' O4' H4' 119.6 118.8
O4' C4' C3' O3' 204.9 217.2
O4' C4' C3' C2' 326.1 335.9
O4' C4' C3' H3' 87.0 94.7
C4' O4' C1' C2' 1.9 319.6
C4' O4' C1' N9 237.8 200.7
C4' O4' C1' H1' 120.9 78.4
C3' C4' C5' H5'1 294.8 297.0
C3' C4' C5' H5'2 185.4 56.9
C5' C4' C3' O4' 241.6 241.1
C5' C4' C3' H4' 118.4 122.2
O4' C4' C3' H4' 236.9 241.2
C3' C4' O4' C1' 20.0 40.5
O3' C3' C4' C2' 238.7 241.3
O3' C3' C4' H3' 117.8 122.6
C4' C3' O3' HO3' 179.9 180.0
C2' C3' C4' H3' 239.1 241.2
C4' C3' C2' O2' 281.8 241.2
C4' C3' C2' C1' 34.7 0.2
C4' C3' C2' H2' 160.1 118.6
H4' C4' C5' H5'1 54.5 59.3
H4' C4' C5' H5'2 305.1 179.2
C5' C4' H4' O4' 119.2 122.3
C5' C4' H4' C3' 237.1 237.6
O4' C4' H4' C3' 117.9 115.4
H4' C4' O4' C1' 260.5 281.6
H4' C4' C3' O3' 328.0 336.1
H4' C4' C3' C2' 89.3 94.8
H4' C4' C3' H3' 210.2 213.5
C1' O4' C4' C3' 20.0 40.5
C1' O4' C4' H4' 260.5 281.6
C3' C2' C1' O4' 337.3 23.8
O2' C2' C1' O4' 95.0 142.6
O4' C1' C2' H2' 216.0 265.3
C2' C1' O4' N9 124.1 118.9
C2' C1' O4' H1' 240.9 241.2
N9 C1' O4' H1' 116.9 122.3
O4' C1' N9 C8 40.8 27.0
O4' C1' N9 C4 221.9 207.1
O3' C3' C4' H4' 328.0 336.1
C4' C3' O3' C2' 114.6 114.7
C4' C3' O3' H3' 235.8 237.4
C2' C3' O3' H3' 121.3 122.7
O3' C3' C2' O2' 39.8 359.8
O3' C3' C2' C1' 152.7 118.8
O3' C3' C2' H2' 278.1 237.3
C2' C3' C4' H4' 89.3 94.8
C4' C3' C2' O3' 242.0 241.3
C4' C3' C2' H3' 123.9 118.7
O4' C1' C2' C3' 337.3 23.8
O3' C3' C2' H3' 242.0 237.4
C2' C3' O3' HO3' 65.4 65.3
O2' C2' C3' C1' 247.1 241.0
O2' C2' C3' H2' 121.7 122.5
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 234.6 241.5
C3' C2' C1' N9 95.2 142.8
C3' C2' C1' H1' 212.2 264.9
H3' C3' C4' H4' 210.2 213.5
C4' C3' H3' O3' 120.1 122.6
C4' C3' H3' C2' 243.4 245.3
O3' C3' H3' C2' 123.3 122.7
H3' C3' O3' HO3' 304.1 302.5
H3' C3' C2' O2' 157.8 122.5
H3' C3' C2' C1' 270.8 241.5
H3' C3' C2' H2' 36.1 360.0
HO3' O3' C3' C2' 65.4 65.3
HO3' O3' C3' H3' 304.1 302.5
O4' C1' C2' O2' 95.0 142.6
O2' C2' C3' H3' 157.8 122.5
C3' C2' O2' C1' 112.7 114.7
C3' C2' O2' H2' 238.1 237.4
C1' C2' O2' H2' 125.4 122.7
O2' C2' C1' N9 213.0 261.6
O2' C2' C1' H1' 330.0 23.7
O4' C1' C2' N9 242.1 241.0
O4' C1' C2' H1' 125.0 118.9
C1' C2' C3' H3' 270.8 241.5
C3' C2' C1' O2' 242.2 241.2
C3' C2' C1' H2' 121.2 118.5
O2' C2' C1' H2' 239.0 237.3
C1' C2' O2' HO2' 67.2 183.9
N9 C1' C2' H1' 243.0 237.9
C2' C1' N9 C8 285.1 271.4
C2' C1' N9 C4 106.3 91.5
H2' C2' C3' H3' 36.1 360.0
C3' C2' H2' O2' 123.1 122.6
C3' C2' H2' C1' 241.6 245.6
O2' C2' H2' C1' 118.5 123.0
H2' C2' O2' HO2' 301.9 61.2
H2' C2' C1' N9 334.0 24.3
H2' C2' C1' H1' 91.0 146.4
HO2' O2' C2' C1' 67.2 183.9
HO2' O2' C2' H2' 301.9 61.2
O4' C1' N9 C2' 115.6 115.6
O4' C1' N9 H1' 234.9 237.7
N9 C1' C2' H2' 334.0 24.3
C2' C1' N9 H1' 119.3 122.1
C8 N9 C1' C4 178.8 179.9
C1' N9 C8 N7 181.6 180.1
C1' N9 C8 H8 1.6 0.1
C1' N9 C4 C5 178.4 180.1
C1' N9 C4 N3 358.7 360.0
O4' C1' H1' C2' 243.6 244.5
O4' C1' H1' N9 118.8 122.4
H1' C1' C2' H2' 91.0 146.4
C2' C1' H1' N9 235.2 237.9
H1' C1' N9 C8 165.9 149.3
H1' C1' N9 C4 347.0 329.4
C8 N9 C1' H1' 165.9 149.3
C1' N9 C8 C4 181.0 180.1
C8 N9 C4 C5 359.3 0.2
C8 N9 C4 N3 179.6 180.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.8 359.8
C4 N9 C1' H1' 347.0 329.4
C1' N9 C4 C8 179.1 179.9
C4 N9 C8 N7 0.6 360.0
C4 N9 C8 H8 180.6 180.0
N7 C5 C4 N9 0.6 359.7
C6 C5 C4 N9 181.0 180.3
C5 C4 N9 N3 179.7 180.2
C2 N3 C4 N9 179.2 180.0
N7 C8 N9 C4 0.6 360.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.3 179.5
C8 N7 C5 C4 359.7 0.3
H8 C8 N9 C4 180.6 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.8 179.8
N9 C4 C5 N7 0.6 359.7
C5 N7 C8 H8 179.8 179.8
C6 C5 N7 C4 179.6 179.1
N7 C5 C6 N6 359.8 0.8
N7 C5 C6 N1 180.0 180.4
N7 C5 C4 N3 180.3 179.8
N9 C4 C5 C6 181.0 180.3
N7 C5 C6 C4 180.4 180.9
C6 C5 C4 N3 0.7 0.5
N6 C6 C5 N1 179.7 180.4
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.7 359.4
C5 C6 N1 C2 359.9 0.3
N9 C4 C5 N3 180.3 179.9
N7 C5 C4 C6 179.7 179.3
C4 C5 C6 N6 179.3 179.8
C4 C5 C6 N1 359.6 359.4
C2 N3 C4 C5 359.6 359.8
N6 C6 C5 C4 179.3 179.8
C5 C6 N6 N1 180.3 179.6
N6 C6 N1 C2 180.2 180.0
HN61 N6 C6 HN62 125.3 180.3
N1 C6 C5 C4 359.6 359.4
C5 C6 N1 N6 179.7 180.4
N1 C6 N6 HN61 359.7 0.1
N1 C6 N6 HN62 234.4 179.8
C6 N1 C2 N3 0.4 360.0
C6 N1 C2 H2 180.4 179.9
HN61 N6 C6 N1 359.7 0.1
C6 N6 HN61 HN62 234.8 179.7
HN62 N6 C6 N1 234.4 179.8
C6 N6 HN62 HN61 132.7 180.3
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 359.9 359.9
N9 C4 N3 C2 179.2 180.0
C5 C4 N3 C2 359.6 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 179.9 180.0
N9 C4 N3 C5 179.6 180.2
C4 N3 C2 H2 179.9 180.0
O3G PD O1D O2D 117.1 120.0
O3G PD O1D O3D 242.9 240.0
O2D PD O1D O3D 125.8 120.0
O1D PD O2D HOD2 293.6 300.0
O1D PD O3D HOD3 66.5 180.0
O3G PD O2D O1D 246.4 240.0
O3G PD O2D O3D 119.2 120.0
O1D PD O2D O3D 232.8 240.0
O2D PD O3D HOD3 299.1 60.0
O3G PD O3D O1D 113.6 120.0
O3G PD O3D O2D 240.9 240.0
O1D PD O3D O2D 127.3 120.0
O3D PD O2D HOD2 60.8 60.0
HOD2 O2D PD O3D 60.8 60.0