PDB Chemical Component ACK
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ACK
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5' |
C4' |
1.538 |
1.530 |
| C5' |
O5' |
1.423 |
1.429 |
| C4' |
O4' |
1.444 |
1.445 |
| C4' |
C3' |
1.528 |
1.545 |
| O4' |
C1' |
1.420 |
1.444 |
| C3' |
O3' |
1.437 |
1.439 |
| C3' |
C2' |
1.524 |
1.543 |
| O3' |
P |
1.600 |
1.633 |
| C1' |
N9 |
1.480 |
1.465 |
| C1' |
C2' |
1.524 |
1.544 |
| C8 |
N9 |
1.351 |
1.363 |
| C8 |
N7 |
1.352 |
1.302 |
| N9 |
C4 |
1.320 |
1.372 |
| C2' |
O2' |
1.410 |
1.440 |
| O1P |
P |
1.520 |
1.480 |
| P |
O2' |
1.630 |
1.634 |
| P |
O3P |
1.485 |
1.610 |
| N7 |
C5 |
1.342 |
1.355 |
| C4 |
N3 |
1.377 |
1.329 |
| C4 |
C5 |
1.467 |
1.405 |
| N3 |
C2 |
1.343 |
1.316 |
| C5 |
C6 |
1.453 |
1.406 |
| C2 |
N1 |
1.357 |
1.320 |
| C6 |
N1 |
1.348 |
1.329 |
| C6 |
N6 |
1.362 |
1.383 |
| O3P |
H1 |
0.950 |
0.967 |
| C3' |
H2 |
1.100 |
1.090 |
| C4' |
H3 |
1.100 |
1.090 |
| C5' |
H4 |
1.100 |
1.090 |
| C5' |
H5 |
1.100 |
1.089 |
| O5' |
H6 |
0.950 |
0.967 |
| C1' |
H7 |
1.101 |
1.091 |
| C8 |
H8 |
1.080 |
1.080 |
| N6 |
H9 |
1.000 |
0.970 |
| N6 |
H10 |
1.000 |
0.970 |
| C2 |
H11 |
1.080 |
1.080 |
| C2' |
H12 |
1.100 |
1.090 |
Bond Angles for ACK
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5' |
C4' |
H3 |
109.0 |
110.4 |
| O5' |
C5' |
H4 |
109.3 |
109.5 |
| O5' |
C5' |
H5 |
109.3 |
109.5 |
| C5' |
O5' |
H6 |
109.5 |
114.0 |
| C4' |
O4' |
C1' |
108.8 |
105.3 |
| O4' |
C4' |
H3 |
110.3 |
110.4 |
| C4' |
C3' |
C2' |
105.0 |
104.1 |
| C4' |
C3' |
H2 |
109.7 |
111.9 |
| O4' |
C1' |
N9 |
109.8 |
110.4 |
| O4' |
C1' |
C2' |
106.7 |
104.8 |
| O4' |
C1' |
H7 |
109.2 |
110.4 |
| C3' |
C2' |
C1' |
102.3 |
104.1 |
| C2' |
C3' |
H2 |
109.8 |
111.0 |
| C3' |
C2' |
H12 |
112.4 |
111.0 |
| N9 |
C1' |
C2' |
114.9 |
110.4 |
| C1' |
N9 |
C4 |
122.6 |
126.3 |
| N9 |
C1' |
H7 |
108.4 |
110.3 |
| C2' |
C1' |
H7 |
107.8 |
110.5 |
| C1' |
C2' |
H12 |
112.4 |
111.1 |
| C8 |
N9 |
C4 |
110.4 |
107.5 |
| C8 |
N7 |
C5 |
106.4 |
109.4 |
| N7 |
C8 |
H8 |
124.8 |
125.0 |
| N9 |
C4 |
N3 |
135.1 |
134.9 |
| N9 |
C4 |
C5 |
104.2 |
106.0 |
| O1P |
P |
O2' |
103.6 |
111.1 |
| P |
O3P |
H1 |
109.5 |
114.0 |
| N7 |
C5 |
C6 |
133.9 |
134.7 |
| N3 |
C2 |
H11 |
118.3 |
118.7 |
| C5 |
C6 |
N1 |
116.9 |
118.4 |
| C5 |
C6 |
N6 |
118.2 |
120.8 |
| N6 |
C6 |
N1 |
124.8 |
120.8 |
| C6 |
N6 |
H9 |
109.5 |
120.0 |
| C6 |
N6 |
H10 |
109.4 |
120.0 |
| H4 |
C5' |
H5 |
109.5 |
109.5 |
| H9 |
N6 |
H10 |
109.5 |
120.0 |
Torsion Angles for ACK
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5' |
C4' |
O4' |
C1' |
132.4 |
159.3 |
| O4' |
C4' |
C5' |
H3 |
121.0 |
122.4 |
| C5' |
C4' |
C3' |
C2' |
248.9 |
217.3 |
| C5' |
C4' |
C3' |
H2 |
6.9 |
337.2 |
| O5' |
C5' |
C4' |
H3 |
181.9 |
304.1 |
| H4 |
C5' |
O5' |
H5 |
119.8 |
120.0 |
| C5' |
C4' |
O4' |
H3 |
239.8 |
237.6 |
| O4' |
C4' |
C3' |
C2' |
9.3 |
336.1 |
| O4' |
C4' |
C3' |
H2 |
127.2 |
96.0 |
| C4' |
O4' |
C1' |
N9 |
207.4 |
200.7 |
| C4' |
O4' |
C1' |
C2' |
332.4 |
319.5 |
| C4' |
O4' |
C1' |
H7 |
88.7 |
78.5 |
| C4' |
C3' |
C2' |
C1' |
335.6 |
360.0 |
| C2' |
C3' |
C4' |
H2 |
242.0 |
240.1 |
| C4' |
C3' |
C2' |
H12 |
96.4 |
119.5 |
| C1' |
O4' |
C4' |
H3 |
252.6 |
281.7 |
| C3' |
C2' |
C1' |
O4' |
32.1 |
24.0 |
| N9 |
C1' |
O4' |
C2' |
234.9 |
241.2 |
| O4' |
C1' |
N9 |
C4 |
227.7 |
203.5 |
| N9 |
C1' |
O4' |
H7 |
118.7 |
122.2 |
| C2' |
C1' |
O4' |
H7 |
243.8 |
241.0 |
| O4' |
C1' |
C2' |
H12 |
271.3 |
264.5 |
| C4' |
C3' |
C2' |
H2 |
117.9 |
120.5 |
| O4' |
C1' |
C2' |
C3' |
32.1 |
24.0 |
| N9 |
C1' |
C2' |
C3' |
154.1 |
142.8 |
| C3' |
C2' |
C1' |
H7 |
275.0 |
265.1 |
| C1' |
C2' |
C3' |
H12 |
239.2 |
240.4 |
| O3' |
P |
O3P |
H1 |
130.7 |
68.3 |
| O4' |
C1' |
N9 |
C2' |
120.2 |
115.4 |
| O4' |
C1' |
N9 |
H7 |
240.8 |
237.7 |
| C3' |
C2' |
C1' |
N9 |
154.1 |
142.8 |
| C2' |
C1' |
N9 |
H7 |
120.6 |
122.4 |
| N9 |
C1' |
C2' |
H12 |
33.2 |
23.3 |
| C8 |
N9 |
C1' |
C4 |
178.0 |
180.4 |
| C1' |
N9 |
C4 |
N3 |
357.0 |
0.8 |
| C1' |
N9 |
C4 |
C5 |
178.1 |
180.0 |
| O4' |
C1' |
C2' |
N9 |
238.1 |
241.2 |
| O4' |
C1' |
C2' |
H7 |
117.1 |
118.9 |
| C1' |
C2' |
C3' |
H2 |
217.7 |
239.5 |
| C3' |
C2' |
C1' |
H12 |
120.8 |
119.5 |
| C2' |
C1' |
N9 |
C4 |
107.5 |
88.2 |
| N9 |
C1' |
C2' |
H7 |
239.1 |
237.7 |
| C8 |
N9 |
C1' |
C2' |
285.6 |
268.6 |
| C1' |
N9 |
C8 |
C4 |
181.8 |
179.6 |
| C8 |
N9 |
C1' |
H7 |
165.0 |
146.2 |
| C8 |
N9 |
C4 |
N3 |
178.6 |
180.4 |
| C8 |
N9 |
C4 |
C5 |
359.8 |
359.6 |
| N7 |
C8 |
N9 |
C4 |
0.5 |
0.3 |
| C8 |
N7 |
C5 |
C6 |
181.7 |
180.0 |
| C4 |
N9 |
C1' |
C2' |
107.5 |
88.2 |
| C4 |
N9 |
C1' |
H7 |
346.9 |
325.8 |
| O1P |
P |
O3P |
H1 |
0.0 |
304.1 |
| O2' |
P |
O3P |
H1 |
237.8 |
180.0 |
| C5 |
N7 |
C8 |
H8 |
179.4 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
359.8 |
0.4 |
| N7 |
C5 |
C6 |
N1 |
178.1 |
180.0 |
| N7 |
C5 |
C6 |
N6 |
0.8 |
0.0 |
| N9 |
C4 |
N3 |
C5 |
181.3 |
179.1 |
| C4 |
N3 |
C2 |
H11 |
179.2 |
179.8 |
| N9 |
C4 |
C5 |
N3 |
179.1 |
180.6 |
| N9 |
C4 |
N3 |
C2 |
182.2 |
179.6 |
| N9 |
C4 |
C5 |
C6 |
178.8 |
180.2 |
| N6 |
C6 |
C5 |
N1 |
182.7 |
180.1 |
| C5 |
C6 |
N6 |
H9 |
177.0 |
360.0 |
| C5 |
C6 |
N6 |
H10 |
297.0 |
180.0 |
| C5 |
C6 |
N1 |
N6 |
182.9 |
180.1 |
| N1 |
C6 |
N6 |
H9 |
360.0 |
180.1 |
| N1 |
C6 |
N6 |
H10 |
120.0 |
0.0 |
| C5 |
C6 |
N6 |
N1 |
177.0 |
179.9 |
| H9 |
N6 |
C6 |
H10 |
240.0 |
180.0 |
| C4' |
C3' |
H2 |
C2' |
245.1 |
244.2 |
| H2 |
C3' |
C2' |
C1' |
217.7 |
239.5 |
| H2 |
C3' |
C2' |
H12 |
338.5 |
359.0 |
| H3 |
C4' |
O4' |
C1' |
252.6 |
281.7 |
| H3 |
C4' |
C3' |
C2' |
128.7 |
94.9 |
| H3 |
C4' |
C3' |
H2 |
246.7 |
214.8 |
| H4 |
C5' |
C4' |
H3 |
302.0 |
64.1 |
| O5' |
C5' |
H4 |
H5 |
240.3 |
240.0 |
| H4 |
C5' |
O5' |
H6 |
59.9 |
60.0 |
| H5 |
C5' |
C4' |
H3 |
61.8 |
184.2 |
| O5' |
C5' |
H5 |
H4 |
119.7 |
120.0 |
| H5 |
C5' |
O5' |
H6 |
300.1 |
300.0 |
| H6 |
O5' |
C5' |
H4 |
59.9 |
60.0 |
| H6 |
O5' |
C5' |
H5 |
300.1 |
300.0 |
| O4' |
C1' |
H7 |
N9 |
119.6 |
122.2 |
| O4' |
C1' |
H7 |
C2' |
244.5 |
244.6 |
| N9 |
C1' |
H7 |
C2' |
124.9 |
122.3 |
| H7 |
C1' |
N9 |
C4 |
346.9 |
325.8 |
| H7 |
C1' |
C2' |
H12 |
154.2 |
145.6 |
| H8 |
C8 |
N9 |
C4 |
180.5 |
180.2 |
| H8 |
C8 |
N7 |
C5 |
179.4 |
180.0 |
| H9 |
N6 |
C6 |
N1 |
360.0 |
180.1 |
| C6 |
N6 |
H9 |
H10 |
120.0 |
180.0 |
| H10 |
N6 |
C6 |
N1 |
120.0 |
0.0 |
| C6 |
N6 |
H10 |
H9 |
240.0 |
180.0 |
| C3' |
C2' |
H12 |
C1' |
245.2 |
244.7 |
| H12 |
C2' |
C3' |
H2 |
338.5 |
359.0 |
| H12 |
C2' |
C1' |
H7 |
154.2 |
145.6 |