PDB Chemical Component AC2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AC2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3' |
O3' |
1.447 |
1.428 |
| C3' |
C2' |
1.512 |
1.530 |
| C3' |
H3'1 |
1.115 |
1.090 |
| C3' |
H3'2 |
1.115 |
1.090 |
| O3' |
HO'3 |
0.950 |
0.967 |
| C2' |
O1' |
1.406 |
1.429 |
| C2' |
H2'1 |
1.114 |
1.089 |
| C2' |
H2'2 |
1.115 |
1.091 |
| O1' |
C1' |
1.395 |
1.429 |
| C1' |
N9 |
1.430 |
1.465 |
| C1' |
H1'1 |
1.116 |
1.089 |
| C1' |
H1'2 |
1.115 |
1.089 |
| N9 |
C8 |
1.401 |
1.364 |
| N9 |
C4 |
1.394 |
1.368 |
| C8 |
N7 |
1.324 |
1.300 |
| C8 |
H8 |
1.102 |
1.080 |
| N7 |
C5 |
1.448 |
1.355 |
| C5 |
C6 |
1.446 |
1.415 |
| C5 |
C4 |
1.367 |
1.399 |
| C6 |
O6 |
1.228 |
1.219 |
| C6 |
N1 |
1.359 |
1.350 |
| N1 |
C2 |
1.331 |
1.363 |
| N1 |
HN1 |
1.020 |
0.970 |
| C2 |
N2 |
1.321 |
1.372 |
| C2 |
N3 |
1.334 |
1.315 |
| N2 |
HN21 |
1.020 |
0.970 |
| N2 |
HN22 |
1.020 |
0.970 |
| N3 |
C4 |
1.343 |
1.338 |
Bond Angles for AC2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3' |
C3' |
C2' |
111.0 |
109.5 |
| O3' |
C3' |
H3'1 |
111.6 |
109.4 |
| O3' |
C3' |
H3'2 |
111.6 |
109.5 |
| C3' |
O3' |
HO'3 |
111.0 |
106.8 |
| C2' |
C3' |
H3'1 |
111.6 |
109.5 |
| C2' |
C3' |
H3'2 |
111.7 |
109.5 |
| C3' |
C2' |
O1' |
104.7 |
109.5 |
| C3' |
C2' |
H2'1 |
114.0 |
109.5 |
| C3' |
C2' |
H2'2 |
113.9 |
109.5 |
| H3'1 |
C3' |
H3'2 |
98.8 |
109.4 |
| O1' |
C2' |
H2'1 |
114.0 |
109.5 |
| O1' |
C2' |
H2'2 |
114.0 |
109.4 |
| C2' |
O1' |
C1' |
109.6 |
106.8 |
| H2'1 |
C2' |
H2'2 |
96.5 |
109.4 |
| O1' |
C1' |
N9 |
102.6 |
109.4 |
| O1' |
C1' |
H1'1 |
114.8 |
109.5 |
| O1' |
C1' |
H1'2 |
114.8 |
109.5 |
| N9 |
C1' |
H1'1 |
114.9 |
109.5 |
| N9 |
C1' |
H1'2 |
114.8 |
109.4 |
| C1' |
N9 |
C8 |
128.1 |
126.3 |
| C1' |
N9 |
C4 |
127.4 |
126.3 |
| H1'1 |
C1' |
H1'2 |
95.6 |
109.5 |
| C8 |
N9 |
C4 |
104.4 |
107.4 |
| N9 |
C8 |
N7 |
115.5 |
109.8 |
| N9 |
C8 |
H8 |
124.8 |
125.1 |
| N9 |
C4 |
C5 |
107.3 |
106.1 |
| N9 |
C4 |
N3 |
126.5 |
134.2 |
| N7 |
C8 |
H8 |
119.7 |
125.0 |
| C8 |
N7 |
C5 |
101.6 |
109.3 |
| N7 |
C5 |
C6 |
130.9 |
134.2 |
| N7 |
C5 |
C4 |
111.2 |
107.3 |
| C6 |
C5 |
C4 |
117.8 |
118.6 |
| C5 |
C6 |
O6 |
133.0 |
120.8 |
| C5 |
C6 |
N1 |
113.4 |
118.3 |
| C5 |
C4 |
N3 |
126.2 |
119.7 |
| O6 |
C6 |
N1 |
113.6 |
120.8 |
| C6 |
N1 |
C2 |
124.8 |
120.4 |
| C6 |
N1 |
HN1 |
118.8 |
119.8 |
| C2 |
N1 |
HN1 |
116.4 |
119.8 |
| N1 |
C2 |
N2 |
112.5 |
119.1 |
| N1 |
C2 |
N3 |
123.5 |
121.9 |
| N2 |
C2 |
N3 |
124.0 |
119.0 |
| C2 |
N2 |
HN21 |
112.5 |
120.0 |
| C2 |
N2 |
HN22 |
111.1 |
120.0 |
| C2 |
N3 |
C4 |
114.3 |
121.1 |
| HN21 |
N2 |
HN22 |
111.1 |
120.0 |
Torsion Angles for AC2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2' |
C3' |
O3' |
H3'1 |
234.8 |
120.0 |
| C2' |
C3' |
O3' |
H3'2 |
125.3 |
240.0 |
| O3' |
C3' |
C2' |
O1' |
65.0 |
60.0 |
| O3' |
C3' |
C2' |
H2'1 |
190.2 |
300.0 |
| O3' |
C3' |
C2' |
H2'2 |
299.7 |
180.0 |
| H3'1 |
C3' |
O3' |
H3'2 |
250.5 |
120.0 |
| O3' |
C3' |
C2' |
H3'1 |
125.2 |
240.0 |
| O3' |
C3' |
C2' |
H3'2 |
234.7 |
120.0 |
| C2' |
C3' |
O3' |
HO'3 |
180.0 |
180.0 |
| H3'1 |
C3' |
C2' |
H3'2 |
109.5 |
240.0 |
| O1' |
C2' |
C3' |
H2'1 |
234.8 |
120.0 |
| O1' |
C2' |
C3' |
H2'2 |
125.3 |
240.0 |
| C3' |
C2' |
O1' |
C1' |
270.8 |
179.9 |
| H2'1 |
C2' |
C3' |
H2'2 |
250.5 |
120.0 |
| O3' |
C3' |
H3'1 |
C2' |
235.1 |
120.0 |
| O3' |
C3' |
H3'1 |
H3'2 |
117.5 |
240.0 |
| H3'1 |
C3' |
O3' |
HO'3 |
305.3 |
60.0 |
| C2' |
C3' |
H3'1 |
H3'2 |
242.4 |
120.0 |
| H3'1 |
C3' |
C2' |
O1' |
299.8 |
180.0 |
| H3'1 |
C3' |
C2' |
H2'1 |
65.0 |
59.9 |
| H3'1 |
C3' |
C2' |
H2'2 |
174.5 |
299.9 |
| O3' |
C3' |
H3'2 |
C2' |
124.9 |
240.0 |
| O3' |
C3' |
H3'2 |
H3'1 |
242.5 |
119.9 |
| H3'2 |
C3' |
O3' |
HO'3 |
54.7 |
300.0 |
| C2' |
C3' |
H3'2 |
H3'1 |
117.6 |
239.9 |
| H3'2 |
C3' |
C2' |
O1' |
190.2 |
300.0 |
| H3'2 |
C3' |
C2' |
H2'1 |
315.5 |
179.9 |
| H3'2 |
C3' |
C2' |
H2'2 |
65.0 |
59.9 |
| HO'3 |
O3' |
C3' |
C2' |
180.0 |
180.0 |
| HO'3 |
O3' |
C3' |
H3'1 |
305.3 |
60.0 |
| HO'3 |
O3' |
C3' |
H3'2 |
54.7 |
300.0 |
| O1' |
C2' |
C3' |
H3'1 |
299.8 |
180.0 |
| O1' |
C2' |
C3' |
H3'2 |
190.2 |
300.0 |
| C3' |
C2' |
O1' |
H2'1 |
125.2 |
239.9 |
| C3' |
C2' |
O1' |
H2'2 |
234.8 |
120.0 |
| H2'1 |
C2' |
O1' |
H2'2 |
109.6 |
240.0 |
| C2' |
O1' |
C1' |
N9 |
267.9 |
180.0 |
| C2' |
O1' |
C1' |
H1'1 |
33.2 |
60.0 |
| C2' |
O1' |
C1' |
H1'2 |
142.6 |
300.0 |
| H2'1 |
C2' |
C3' |
H3'1 |
65.0 |
59.9 |
| H2'1 |
C2' |
C3' |
H3'2 |
315.5 |
179.9 |
| C3' |
C2' |
H2'1 |
O1' |
239.9 |
120.1 |
| C3' |
C2' |
H2'1 |
H2'2 |
119.9 |
240.0 |
| O1' |
C2' |
H2'1 |
H2'2 |
240.0 |
120.0 |
| H2'1 |
C2' |
O1' |
C1' |
145.5 |
300.0 |
| H2'2 |
C2' |
C3' |
H3'1 |
174.5 |
299.9 |
| H2'2 |
C2' |
C3' |
H3'2 |
65.0 |
59.9 |
| C3' |
C2' |
H2'2 |
O1' |
120.1 |
240.0 |
| C3' |
C2' |
H2'2 |
H2'1 |
240.1 |
120.0 |
| O1' |
C2' |
H2'2 |
H2'1 |
120.0 |
240.0 |
| H2'2 |
C2' |
O1' |
C1' |
36.0 |
60.0 |
| C1' |
O1' |
C2' |
H2'1 |
145.5 |
300.0 |
| C1' |
O1' |
C2' |
H2'2 |
36.0 |
60.0 |
| N9 |
C1' |
O1' |
H1'1 |
234.7 |
120.0 |
| N9 |
C1' |
O1' |
H1'2 |
125.3 |
240.0 |
| O1' |
C1' |
N9 |
C8 |
323.7 |
0.0 |
| O1' |
C1' |
N9 |
C4 |
145.0 |
180.1 |
| H1'1 |
C1' |
O1' |
H1'2 |
250.6 |
120.0 |
| O1' |
C1' |
N9 |
H1'1 |
125.3 |
240.0 |
| O1' |
C1' |
N9 |
H1'2 |
234.7 |
120.0 |
| H1'1 |
C1' |
N9 |
H1'2 |
109.5 |
240.0 |
| C8 |
N9 |
C1' |
C4 |
178.7 |
179.9 |
| C1' |
N9 |
C8 |
N7 |
181.3 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
1.2 |
0.0 |
| C1' |
N9 |
C4 |
C5 |
180.0 |
180.0 |
| C1' |
N9 |
C4 |
N3 |
1.3 |
359.9 |
| O1' |
C1' |
H1'1 |
N9 |
241.4 |
120.0 |
| O1' |
C1' |
H1'1 |
H1'2 |
120.7 |
239.9 |
| N9 |
C1' |
H1'1 |
H1'2 |
239.3 |
119.9 |
| H1'1 |
C1' |
N9 |
C8 |
198.4 |
120.0 |
| H1'1 |
C1' |
N9 |
C4 |
19.7 |
300.1 |
| O1' |
C1' |
H1'2 |
N9 |
118.6 |
240.0 |
| O1' |
C1' |
H1'2 |
H1'1 |
239.3 |
120.0 |
| N9 |
C1' |
H1'2 |
H1'1 |
120.7 |
240.0 |
| H1'2 |
C1' |
N9 |
C8 |
89.0 |
240.0 |
| H1'2 |
C1' |
N9 |
C4 |
270.2 |
60.0 |
| C8 |
N9 |
C1' |
H1'1 |
198.4 |
120.0 |
| C8 |
N9 |
C1' |
H1'2 |
89.0 |
240.0 |
| C1' |
N9 |
C8 |
C4 |
181.0 |
180.0 |
| C8 |
N9 |
C4 |
C5 |
1.0 |
0.0 |
| C8 |
N9 |
C4 |
N3 |
182.4 |
180.0 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| N9 |
C8 |
N7 |
C5 |
358.8 |
0.0 |
| C4 |
N9 |
C1' |
H1'1 |
19.7 |
300.1 |
| C4 |
N9 |
C1' |
H1'2 |
270.2 |
60.0 |
| C1' |
N9 |
C4 |
C8 |
179.0 |
180.0 |
| C4 |
N9 |
C8 |
N7 |
0.2 |
360.0 |
| C4 |
N9 |
C8 |
H8 |
180.2 |
180.0 |
| N7 |
C5 |
C4 |
N9 |
358.2 |
360.0 |
| C6 |
C5 |
C4 |
N9 |
182.1 |
179.9 |
| C5 |
C4 |
N9 |
N3 |
178.6 |
180.1 |
| C2 |
N3 |
C4 |
N9 |
177.6 |
180.0 |
| N7 |
C8 |
N9 |
C4 |
0.2 |
360.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| C8 |
N7 |
C5 |
C6 |
177.3 |
180.1 |
| C8 |
N7 |
C5 |
C4 |
1.9 |
360.0 |
| H8 |
C8 |
N9 |
C4 |
180.2 |
180.0 |
| N9 |
C8 |
H8 |
N7 |
180.0 |
179.9 |
| H8 |
C8 |
N7 |
C5 |
178.8 |
180.0 |
| N9 |
C4 |
C5 |
N7 |
358.2 |
360.0 |
| C5 |
N7 |
C8 |
H8 |
178.8 |
180.0 |
| C6 |
C5 |
N7 |
C4 |
175.5 |
180.1 |
| N7 |
C5 |
C6 |
O6 |
2.8 |
360.0 |
| N7 |
C5 |
C6 |
N1 |
183.9 |
179.7 |
| N7 |
C5 |
C4 |
N3 |
176.8 |
180.0 |
| N9 |
C4 |
C5 |
C6 |
182.1 |
179.9 |
| N7 |
C5 |
C6 |
C4 |
184.8 |
179.9 |
| C6 |
C5 |
C4 |
N3 |
0.7 |
360.0 |
| O6 |
C6 |
C5 |
N1 |
178.9 |
180.3 |
| C5 |
C6 |
N1 |
C2 |
1.4 |
0.6 |
| C5 |
C6 |
N1 |
HN1 |
181.4 |
179.9 |
| N9 |
C4 |
C5 |
N3 |
181.4 |
179.9 |
| N7 |
C5 |
C4 |
C6 |
176.1 |
180.1 |
| C4 |
C5 |
C6 |
O6 |
178.0 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.1 |
359.8 |
| C2 |
N3 |
C4 |
C5 |
359.2 |
360.0 |
| O6 |
C6 |
C5 |
C4 |
178.0 |
180.0 |
| C5 |
C6 |
O6 |
N1 |
181.1 |
179.7 |
| O6 |
C6 |
N1 |
C2 |
182.3 |
180.3 |
| O6 |
C6 |
N1 |
HN1 |
2.3 |
359.6 |
| N1 |
C6 |
C5 |
C4 |
359.1 |
359.8 |
| C5 |
C6 |
N1 |
O6 |
179.1 |
180.3 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
180.7 |
| C6 |
N1 |
C2 |
N2 |
177.5 |
179.7 |
| C6 |
N1 |
C2 |
N3 |
358.3 |
359.4 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
179.3 |
| N2 |
C2 |
N1 |
N3 |
179.3 |
180.3 |
| N1 |
C2 |
N2 |
HN21 |
180.0 |
179.7 |
| N1 |
C2 |
N2 |
HN22 |
54.7 |
359.4 |
| N1 |
C2 |
N3 |
C4 |
1.3 |
0.4 |
| C6 |
N1 |
HN1 |
C2 |
180.0 |
180.7 |
| HN1 |
N1 |
C2 |
N2 |
357.6 |
0.4 |
| HN1 |
N1 |
C2 |
N3 |
178.3 |
180.0 |
| N2 |
C2 |
N1 |
HN1 |
357.6 |
0.4 |
| N1 |
C2 |
N2 |
N3 |
180.7 |
179.7 |
| N2 |
C2 |
N3 |
C4 |
182.1 |
180.0 |
| HN21 |
N2 |
C2 |
HN22 |
125.3 |
180.3 |
| N9 |
C4 |
N3 |
C2 |
177.6 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
359.2 |
360.0 |
| N3 |
C2 |
N1 |
HN1 |
178.3 |
180.0 |
| N1 |
C2 |
N3 |
N2 |
179.2 |
180.3 |
| N3 |
C2 |
N2 |
HN21 |
359.3 |
360.0 |
| N3 |
C2 |
N2 |
HN22 |
234.0 |
179.7 |
| HN21 |
N2 |
C2 |
N3 |
359.3 |
360.0 |
| C2 |
N2 |
HN21 |
HN22 |
234.7 |
179.7 |
| HN22 |
N2 |
C2 |
N3 |
234.0 |
179.7 |
| C2 |
N2 |
HN22 |
HN21 |
126.0 |
180.3 |
| N9 |
C4 |
N3 |
C5 |
178.4 |
180.1 |