PDB Chemical Component ABS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ABS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.479
P OP2 1.480 1.610
P O5' 1.610 1.610
P OP3 1.613 1.610
OP2 HOP2 0.950 0.966
O5' C5' 1.432 1.428
C5' C4' 1.525 1.530
C5' H5' 1.090 1.090
C5' H5'' 1.090 1.090
C4' O4' 1.452 1.446
C4' C3' 1.518 1.544
C4' H4' 1.085 1.090
O4' C1' 1.445 1.445
C1' N9 1.477 1.465
C1' C2' 1.513 1.544
C1' H1' 1.090 1.090
N9 C4 1.376 1.371
N9 C8 1.353 1.363
C4 N3 1.347 1.328
C4 C5 1.380 1.406
N3 C2 1.325 1.317
C2 N1 1.330 1.321
C2 H2 1.091 1.080
N1 C6 1.371 1.329
C6 N6 1.366 1.383
C6 C5 1.405 1.405
N6 CB 1.499 1.465
N6 H6 1.011 0.970
CA OA 1.419 1.428
CA CB 1.527 1.530
CA CS6 1.510 1.507
CA HA 1.080 1.090
OA HOA 0.960 0.967
CB HB1 1.077 1.089
CB HB2 1.072 1.091
CS6 CS1 1.404 1.382
CS6 CS5 1.398 1.382
CS1 CS2 1.401 1.381
CS1 HS1 1.081 1.080
CS5 CS4 1.397 1.383
CS5 HS5 1.082 1.080
CS2 CS3 1.401 1.383
CS2 HS2 1.081 1.080
CS4 CS3 1.402 1.381
CS4 HS4 1.079 1.080
CS3 HS3 1.080 1.080
C5 N7 1.398 1.354
N7 C8 1.290 1.300
C8 H8 1.088 1.080
C2' C3' 1.501 1.545
C2' H2' 1.091 1.090
C2' H2'' 1.087 1.090
C3' O3' 1.435 1.429
C3' H3' 1.090 1.090
O3' HO3' 0.949 0.967
OP3 HOP3 0.950 0.966

Bond Angles for ABS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.9 109.5
OP1 P O5' 108.4 109.5
OP1 P OP3 108.8 109.5
OP2 P O5' 108.1 109.5
OP2 P OP3 108.2 109.4
P OP2 HOP2 119.8 106.8
O5' P OP3 102.0 109.5
P O5' C5' 120.3 106.8
P OP3 HOP3 108.8 106.9
O5' C5' C4' 111.6 109.5
O5' C5' H5' 109.1 109.5
O5' C5' H5'' 109.1 109.5
C4' C5' H5' 108.9 109.5
C4' C5' H5'' 109.0 109.4
C5' C4' O4' 110.8 110.4
C5' C4' C3' 110.6 110.7
C5' C4' H4' 109.5 110.3
H5' C5' H5'' 109.0 109.5
O4' C4' C3' 107.2 104.7
O4' C4' H4' 109.4 110.4
C4' O4' C1' 109.1 105.4
C3' C4' H4' 109.3 110.2
C4' C3' C2' 103.4 104.2
C4' C3' O3' 110.3 110.5
C4' C3' H3' 109.9 110.5
O4' C1' N9 110.0 110.5
O4' C1' C2' 105.8 104.8
O4' C1' H1' 109.9 110.4
N9 C1' C2' 112.0 110.4
N9 C1' H1' 109.7 110.3
C1' N9 C4 126.8 126.2
C1' N9 C8 129.6 126.3
C2' C1' H1' 109.4 110.4
C1' C2' C3' 104.1 104.1
C1' C2' H2' 110.5 110.5
C1' C2' H2'' 110.7 110.5
C4 N9 C8 103.6 107.5
N9 C4 N3 126.0 135.0
N9 C4 C5 106.5 106.0
N9 C8 N7 117.7 110.0
N9 C8 H8 121.0 125.0
N3 C4 C5 127.5 119.0
C4 N3 C2 111.6 120.7
C4 C5 C6 116.5 118.2
C4 C5 N7 110.5 107.1
N3 C2 N1 127.1 122.4
N3 C2 H2 116.4 118.8
N1 C2 H2 116.5 118.8
C2 N1 C6 120.8 121.2
N1 C6 N6 119.8 120.7
N1 C6 C5 116.4 118.5
N6 C6 C5 123.8 120.8
C6 N6 CB 121.9 120.1
C6 N6 H6 119.0 120.0
C6 C5 N7 132.9 134.7
CB N6 H6 119.1 120.0
N6 CB CA 109.1 109.5
N6 CB HB1 110.5 109.6
N6 CB HB2 109.5 109.4
OA CA CB 108.8 109.4
OA CA CS6 108.7 109.5
OA CA HA 109.7 109.4
CA OA HOA 107.8 106.8
CB CA CS6 110.5 109.5
CB CA HA 109.6 109.5
CA CB HB1 109.7 109.5
CA CB HB2 108.5 109.5
CS6 CA HA 109.5 109.5
CA CS6 CS1 120.9 120.0
CA CS6 CS5 119.1 120.0
HB1 CB HB2 109.4 109.4
CS1 CS6 CS5 120.0 120.0
CS6 CS1 CS2 119.9 120.0
CS6 CS1 HS1 120.1 120.0
CS6 CS5 CS4 120.2 120.0
CS6 CS5 HS5 119.9 120.0
CS2 CS1 HS1 120.0 120.0
CS1 CS2 CS3 120.0 120.0
CS1 CS2 HS2 119.9 120.0
CS4 CS5 HS5 120.0 120.0
CS5 CS4 CS3 120.0 120.0
CS5 CS4 HS4 119.8 120.0
CS3 CS2 HS2 120.1 120.0
CS2 CS3 CS4 120.0 120.0
CS2 CS3 HS3 120.0 120.0
CS3 CS4 HS4 120.2 120.0
CS4 CS3 HS3 120.0 120.0
C5 N7 C8 101.7 109.5
N7 C8 H8 121.3 125.0
C3' C2' H2' 110.1 110.6
C3' C2' H2'' 110.7 110.5
C2' C3' O3' 111.9 110.6
C2' C3' H3' 110.6 110.5
H2' C2' H2'' 110.5 110.6
O3' C3' H3' 110.6 110.5
C3' O3' HO3' 110.2 106.8

Torsion Angles for ABS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 124.7 240.0
OP2 P OP1 OP3 234.8 120.0
OP1 P OP2 HOP2 180.0 300.0
O5' P OP1 OP3 110.1 240.0
OP1 P O5' C5' 187.4 60.0
OP1 P OP3 HOP3 179.9 180.0
OP1 P OP2 O5' 235.2 120.0
OP1 P OP2 OP3 125.4 240.0
O5' P OP2 OP3 250.3 120.0
OP2 P O5' C5' 56.0 180.0
OP2 P OP3 HOP3 311.7 60.1
OP1 P O5' OP2 131.4 240.0
OP1 P O5' OP3 245.4 120.1
OP2 P O5' OP3 113.9 240.1
O5' P OP2 HOP2 304.8 180.0
O5' P OP3 HOP3 65.6 300.1
P O5' C5' C4' 185.3 180.1
P O5' C5' H5' 64.9 60.0
P O5' C5' H5'' 305.8 300.0
OP1 P OP3 OP2 228.3 120.0
OP1 P OP3 O5' 114.4 240.0
OP2 P OP3 O5' 246.1 120.0
OP3 P OP2 HOP2 54.6 60.0
OP3 P O5' C5' 302.1 299.9
HOP2 OP2 P O5' 304.8 180.0
HOP2 OP2 P OP3 54.6 60.0
C5' O5' P OP3 302.1 299.9
C4' C5' O5' H5' 120.5 120.0
C4' C5' O5' H5'' 239.5 240.0
O5' C5' C4' O4' 300.2 61.4
O5' C5' C4' C3' 58.9 176.9
O5' C5' C4' H4' 179.4 299.2
H5' C5' O5' H5'' 119.0 120.0
O5' C5' C4' H5' 239.4 240.0
O5' C5' C4' H5'' 120.6 120.0
H5' C5' C4' H5'' 241.2 240.0
O4' C4' C5' C3' 241.3 244.5
O4' C4' C5' H4' 120.8 122.3
C5' C4' O4' C1' 117.2 159.5
C3' C4' C5' H4' 239.5 237.8
C5' C4' C3' C2' 261.3 217.3
C5' C4' C3' O3' 141.5 98.5
C5' C4' C3' H3' 19.3 335.9
O5' C5' H5' C4' 122.1 120.0
O5' C5' H5' H5'' 240.9 240.0
C4' C5' H5' H5'' 118.8 120.0
H5' C5' C4' O4' 60.7 181.5
H5' C5' C4' C3' 179.4 296.9
H5' C5' C4' H4' 299.9 59.2
O5' C5' H5'' C4' 237.9 240.0
O5' C5' H5'' H5' 119.1 120.0
C4' C5' H5'' H5' 241.2 240.0
H5'' C5' C4' O4' 179.6 301.4
H5'' C5' C4' C3' 298.3 56.9
H5'' C5' C4' H4' 58.8 179.1
O4' C4' C5' H5' 60.7 181.5
O4' C4' C5' H5'' 179.6 301.4
C5' C4' O4' C3' 120.7 119.2
C5' C4' O4' H4' 239.1 237.8
C3' C4' O4' H4' 118.4 118.7
O4' C4' C3' C2' 22.2 336.2
O4' C4' C3' O3' 262.4 217.4
O4' C4' C3' H3' 140.2 94.9
C4' O4' C1' N9 222.2 200.7
C4' O4' C1' C2' 343.4 319.5
C4' O4' C1' H1' 101.4 78.4
C3' C4' C5' H5' 179.4 296.9
C3' C4' C5' H5'' 298.3 56.9
C5' C4' C3' O4' 239.1 241.0
C5' C4' C3' H4' 120.6 122.3
O4' C4' C3' H4' 241.5 241.2
C3' C4' O4' C1' 356.5 40.3
C1' C2' C3' C4' 328.5 359.9
C4' C3' C2' H2' 86.9 118.5
C4' C3' C2' H2'' 209.4 241.3
C2' C3' C4' O3' 119.8 118.8
C2' C3' C4' H3' 242.0 241.3
O3' C3' C4' H3' 122.2 122.6
C4' C3' O3' HO3' 180.0 178.1
H4' C4' C5' H5' 299.9 59.2
H4' C4' C5' H5'' 58.8 179.1
C5' C4' H4' O4' 121.6 122.3
C5' C4' H4' C3' 238.7 237.5
O4' C4' H4' C3' 117.1 115.2
H4' C4' O4' C1' 238.1 281.7
H4' C4' C3' C2' 140.7 95.0
H4' C4' C3' O3' 20.9 336.2
H4' C4' C3' H3' 258.7 213.7
C1' O4' C4' C3' 356.5 40.3
C1' O4' C4' H4' 238.1 281.7
N9 C1' O4' C2' 238.8 241.1
N9 C1' O4' H1' 120.9 122.3
O4' C1' N9 C4 246.2 205.2
O4' C1' N9 C8 64.4 25.4
C2' C1' O4' H1' 242.0 241.2
O4' C1' C2' C3' 30.3 24.0
O4' C1' C2' H2' 272.1 265.3
O4' C1' C2' H2'' 149.3 142.6
O4' C1' N9 C2' 117.4 115.4
O4' C1' N9 H1' 239.0 237.7
C2' C1' N9 H1' 121.6 122.3
N9 C1' C2' C3' 150.1 142.9
N9 C1' C2' H2' 31.9 24.2
N9 C1' C2' H2'' 269.1 261.5
C4 N9 C1' C8 181.7 179.8
C1' N9 C4 N3 358.7 0.7
C1' N9 C4 C5 178.7 179.9
C1' N9 C8 N7 181.4 180.0
C1' N9 C8 H8 1.0 360.0
C4' C3' C2' C1' 328.5 359.9
O4' C1' C2' N9 240.1 241.1
O4' C1' C2' H1' 118.3 118.8
N9 C1' C2' H1' 238.2 237.8
C2' C1' N9 C4 128.8 89.8
C2' C1' N9 C8 307.1 270.0
C3' C2' C1' H2' 118.2 118.7
C3' C2' C1' H2'' 241.0 241.4
C1' C2' C3' O3' 87.1 118.6
C1' C2' C3' H3' 210.9 241.2
H2' C2' C1' H2'' 122.8 122.7
O4' C1' H1' N9 121.1 122.4
O4' C1' H1' C2' 244.3 244.6
N9 C1' H1' C2' 123.2 122.3
H1' C1' N9 C4 7.2 327.5
H1' C1' N9 C8 185.5 147.7
H1' C1' C2' C3' 271.9 265.2
H1' C1' C2' H2' 153.7 146.5
H1' C1' C2' H2'' 30.9 23.8
C4 N9 C1' C2' 128.8 89.8
C4 N9 C1' H1' 7.2 327.5
C1' N9 C4 C8 178.6 180.2
C4 N9 C8 N7 360.0 0.2
C4 N9 C8 H8 179.6 180.2
N3 C4 N9 C5 180.0 180.8
N9 C4 N3 C2 180.0 179.6
N9 C4 C5 C6 180.0 180.2
N9 C4 C5 N7 360.0 0.3
C8 N9 C1' C2' 307.1 270.0
C8 N9 C1' H1' 185.5 147.7
C1' N9 C8 C4 181.4 179.8
C8 N9 C4 N3 180.1 180.5
C8 N9 C4 C5 0.0 359.7
C5 N7 C8 N9 0.0 360.0
N7 C8 N9 H8 180.4 180.0
N3 C4 N9 C8 180.1 180.5
N9 C4 N3 C5 180.0 179.1
N3 C4 C5 C6 359.9 359.5
N3 C4 C5 N7 179.9 179.6
C4 N3 C2 N1 360.0 359.7
C4 N3 C2 H2 180.2 179.7
C5 C4 N9 C8 0.0 359.7
N9 C4 C5 N3 180.0 180.6
C5 C4 N3 C2 0.1 0.5
N1 C6 C5 C4 0.0 0.2
N6 C6 C5 C4 180.4 180.3
C6 C5 C4 N7 180.0 179.9
C4 C5 N7 C8 0.0 359.8
C2 N3 C4 C5 0.1 0.5
N1 C2 N3 H2 179.8 180.0
N3 C2 N1 C6 360.0 360.0
N3 C2 N1 H2 180.2 180.0
C2 N1 C6 N6 179.6 180.0
C2 N1 C6 C5 0.0 0.0
N3 C2 H2 N1 179.8 180.0
H2 C2 N1 C6 179.8 180.0
C4 C5 C6 N1 0.0 0.2
C6 N1 C2 H2 179.8 180.0
N6 C6 N1 C5 179.6 180.0
N1 C6 N6 CB 180.9 360.0
N1 C6 N6 H6 0.5 180.0
N1 C6 C5 N7 180.0 180.1
C4 C5 C6 N6 180.4 180.3
N1 C6 N6 C5 180.4 180.0
N6 C6 C5 N7 0.4 0.1
CB N6 C6 H6 180.4 179.9
C6 N6 CB CA 128.5 180.0
C6 N6 CB HB1 7.8 300.1
C6 N6 CB HB2 247.2 60.0
C4 C5 C6 N7 180.0 180.2
N1 C6 C5 N6 179.6 180.0
C5 C6 N6 CB 0.5 179.9
C5 C6 N6 H6 180.1 360.0
C6 C5 N7 C8 180.0 180.0
CB N6 C6 C5 0.5 179.9
C6 N6 CB H6 179.6 180.1
OA CA CB N6 48.7 60.0
N6 CB CA CS6 167.9 180.1
N6 CB CA HA 288.7 300.1
CA CB N6 HB1 120.7 239.9
CA CB N6 HB2 241.3 119.9
HB1 CB N6 HB2 120.6 240.1
H6 N6 C6 C5 180.1 360.0
C6 N6 H6 CB 180.4 179.9
H6 N6 CB CA 308.9 359.9
H6 N6 CB HB1 188.2 120.0
H6 N6 CB HB2 67.6 240.0
N6 CB CA OA 48.7 60.0
CB CA OA CS6 120.4 120.0
CB CA OA HA 240.1 240.0
OA CA CB HB1 169.8 299.9
OA CA CB HB2 289.4 179.9
CS6 CA OA HA 119.7 120.0
OA CA CS6 CS1 154.0 210.1
OA CA CS6 CS5 334.0 29.7
CA CB N6 H6 308.9 359.9
N6 CB CA HB1 238.8 120.1
N6 CB CA HB2 119.3 240.1
OA CA CB CS6 240.7 240.0
OA CA CB HA 119.9 119.9
CB CA OA HOA 218.8 60.0
CS6 CA CB HA 239.2 239.9
CB CA CS6 CS1 34.7 90.1
CB CA CS6 CS5 214.7 269.8
HB1 CB CA HB2 240.4 120.0
OA CA CS6 CB 119.3 120.0
OA CA CS6 HA 240.2 240.1
CS6 CA OA HOA 98.4 300.0
CB CA CS6 HA 120.9 120.1
CS6 CA CB HB1 289.1 59.9
CS6 CA CB HB2 48.7 299.9
CS1 CS6 CA CS5 180.0 180.3
CA CS6 CS1 CS2 180.0 180.0
CA CS6 CS1 HS1 360.0 359.9
CA CS6 CS5 CS4 179.9 179.8
CA CS6 CS5 HS5 0.1 0.2
OA CA HA CB 240.6 240.1
OA CA HA CS6 119.2 120.0
HA CA OA HOA 338.7 180.0
CB CA HA CS6 238.6 240.0
HA CA CB HB1 49.9 180.0
HA CA CB HB2 169.4 60.0
HA CA CS6 CS1 273.8 330.0
HA CA CS6 CS5 93.8 149.7
HOA OA CA CB 218.8 60.0
HOA OA CA CS6 98.4 300.0
HOA OA CA HA 338.7 180.0
HB1 CB N6 H6 188.2 120.0
N6 CB HB1 CA 120.4 239.9
N6 CB HB1 HB2 239.4 119.9
HB1 CB CA CS6 289.1 59.9
HB1 CB CA HA 49.9 180.0
CA CB HB1 HB2 119.0 240.0
HB2 CB N6 H6 67.6 240.0
N6 CB HB2 CA 241.0 120.0
N6 CB HB2 HB1 121.2 240.0
HB2 CB CA CS6 48.7 299.9
HB2 CB CA HA 169.4 60.0
CA CB HB2 HB1 240.3 120.0
CS1 CS6 CA HA 273.8 330.0
CA CS6 CS1 CS5 180.0 179.7
CS1 CS6 CS5 CS4 359.9 359.5
CS1 CS6 CS5 HS5 180.1 179.9
CS2 CS1 CS6 HS1 180.1 180.0
CS6 CS1 CS2 CS3 0.0 360.0
CS6 CS1 CS2 HS2 179.9 179.9
CS5 CS6 CA HA 93.8 149.7
CA CS6 CS5 CS1 180.0 180.3
CS5 CS6 CS1 CS2 0.0 0.3
CS5 CS6 CS1 HS1 179.9 180.3
CS4 CS5 CS6 HS5 179.8 179.6
CS6 CS5 CS4 CS3 0.1 0.5
CS6 CS5 CS4 HS4 180.0 180.2
CS2 CS1 CS6 CS5 0.0 0.3
CS6 CS1 CS2 HS1 179.9 180.0
CS3 CS2 CS1 HS2 180.1 180.1
CS1 CS2 CS3 CS4 0.0 360.0
CS1 CS2 CS3 HS3 180.0 180.0
HS1 CS1 CS6 CS5 179.9 180.3
CS6 CS1 HS1 CS2 180.1 180.0
HS1 CS1 CS2 CS3 180.1 180.0
HS1 CS1 CS2 HS2 360.0 359.9
CS6 CS5 CS4 HS5 180.2 180.4
CS2 CS3 CS4 CS5 359.9 359.8
CS3 CS4 CS5 HS4 180.1 180.3
CS5 CS4 CS3 HS3 179.9 179.8
CS6 CS5 HS5 CS4 179.8 179.6
HS5 CS5 CS4 CS3 180.0 180.1
HS5 CS5 CS4 HS4 359.8 359.8
CS3 CS2 CS1 HS1 180.1 180.0
CS1 CS2 CS3 HS2 179.9 179.9
CS5 CS4 CS3 CS2 359.9 359.8
CS2 CS3 CS4 HS4 180.0 180.1
CS4 CS3 CS2 HS3 180.1 180.0
HS2 CS2 CS1 HS1 360.0 359.9
CS1 CS2 HS2 CS3 180.1 180.1
HS2 CS2 CS3 CS4 180.1 180.1
HS2 CS2 CS3 HS3 0.1 0.1
CS3 CS4 CS5 HS5 180.0 180.1
CS5 CS4 CS3 HS4 179.9 179.7
CS4 CS3 CS2 HS2 180.1 180.1
CS2 CS3 CS4 HS3 179.9 180.0
HS4 CS4 CS5 HS5 359.8 359.8
CS5 CS4 HS4 CS3 180.1 180.3
HS4 CS4 CS3 HS3 0.0 0.1
HS3 CS3 CS2 HS2 0.1 0.1
CS2 CS3 HS3 CS4 180.1 180.0
HS3 CS3 CS4 HS4 0.0 0.1
N9 C8 N7 C5 0.0 360.0
C4 C5 N7 C6 180.0 179.9
C5 N7 C8 H8 180.4 180.0
N9 C8 N7 H8 179.6 180.0
N9 C8 H8 N7 180.4 180.0
C2' C3' C4' H4' 140.7 95.0
C4' C3' C2' O3' 241.4 241.2
C4' C3' C2' H3' 117.6 118.7
C3' C2' C1' H1' 271.9 265.2
C1' C2' C3' H2' 241.6 241.3
C1' C2' C3' H2'' 119.0 118.6
H2' C2' C3' H2'' 237.4 237.3
O3' C3' C2' H3' 236.2 237.4
C2' C3' O3' HO3' 65.5 63.3
H2' C2' C1' H1' 153.7 146.5
C1' C2' H2' C3' 114.4 114.7
C1' C2' H2' H2'' 237.1 237.4
C3' C2' H2' H2'' 122.7 122.7
H2' C2' C3' O3' 205.5 237.3
H2' C2' C3' H3' 329.3 359.9
H2'' C2' C1' H1' 30.9 23.8
C1' C2' H2'' C3' 245.1 245.4
C1' C2' H2'' H2' 122.7 122.6
C3' C2' H2'' H2' 237.6 237.3
H2'' C2' C3' O3' 328.1 0.0
H2'' C2' C3' H3' 91.9 122.6
O3' C3' C4' H4' 20.9 336.2
C4' C3' O3' C2' 114.5 114.8
C4' C3' O3' H3' 238.2 237.4
O3' C3' C2' H2' 205.5 237.3
O3' C3' C2' H2'' 328.1 0.0
C2' C3' O3' H3' 123.8 122.6
H3' C3' C4' H4' 258.7 213.7
C4' C3' H3' C2' 246.5 245.3
C4' C3' H3' O3' 122.0 122.6
H3' C3' C2' H2' 329.3 359.9
H3' C3' C2' H2'' 91.9 122.6
C2' C3' H3' O3' 235.5 237.3
H3' C3' O3' HO3' 301.7 300.6
HO3' O3' C3' H3' 301.7 300.6