PDB Chemical Component ABR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ABR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.481 1.480
P OP2 1.480 1.610
P O5' 1.611 1.609
P OP3 1.611 1.609
OP2 HOP2 0.951 0.967
O5' C5' 1.431 1.428
C5' C4' 1.524 1.529
C5' H5' 1.086 1.090
C5' H5'' 1.089 1.090
C4' O4' 1.449 1.447
C4' C3' 1.520 1.544
C4' H4' 1.089 1.090
O4' C1' 1.441 1.445
C1' N9 1.471 1.464
C1' C2' 1.513 1.545
C1' H1' 1.091 1.090
N9 C4 1.376 1.372
N9 C8 1.348 1.362
C4 N3 1.348 1.328
C4 C5 1.380 1.404
N3 C2 1.325 1.317
C2 N1 1.329 1.320
C2 H2 1.090 1.080
N1 C6 1.371 1.329
C6 N6 1.363 1.383
C6 C5 1.412 1.405
N6 CB 1.487 1.465
N6 H6 1.010 0.971
CA OA 1.420 1.429
CA CB 1.522 1.531
CA CS6 1.508 1.507
CA HA 1.070 1.090
OA HOA 0.961 0.967
CB HB1 1.059 1.089
CB HB2 1.078 1.089
CS6 CS1 1.399 1.381
CS6 CS5 1.401 1.382
CS1 CS2 1.400 1.382
CS1 HS1 1.080 1.081
CS5 CS4 1.401 1.382
CS5 HS5 1.080 1.080
CS2 CS3 1.400 1.382
CS2 HS2 1.081 1.080
CS4 CS3 1.399 1.382
CS4 HS4 1.081 1.080
CS3 HS3 1.080 1.080
C5 N7 1.405 1.354
N7 C8 1.301 1.301
C8 H8 1.098 1.080
C2' C3' 1.501 1.544
C2' H2' 1.090 1.090
C2' H2'' 1.085 1.090
C3' O3' 1.431 1.429
C3' H3' 1.091 1.090
O3' HO3' 0.950 0.967
OP3 HOP3 0.951 0.966

Bond Angles for ABR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.9 109.4
OP1 P O5' 108.1 109.4
OP1 P OP3 108.2 109.5
OP2 P O5' 108.3 109.5
OP2 P OP3 108.5 109.5
P OP2 HOP2 119.8 106.8
O5' P OP3 102.6 109.5
P O5' C5' 120.2 106.8
P OP3 HOP3 108.2 106.9
O5' C5' C4' 111.9 109.6
O5' C5' H5' 108.8 109.5
O5' C5' H5'' 109.0 109.5
C4' C5' H5' 109.0 109.5
C4' C5' H5'' 109.0 109.4
C5' C4' O4' 110.8 110.3
C5' C4' C3' 110.3 110.8
C5' C4' H4' 109.1 110.3
H5' C5' H5'' 109.1 109.4
O4' C4' C3' 108.0 104.7
O4' C4' H4' 109.2 110.3
C4' O4' C1' 109.5 105.4
C3' C4' H4' 109.4 110.3
C4' C3' C2' 105.1 104.2
C4' C3' O3' 110.9 110.5
C4' C3' H3' 109.6 110.4
O4' C1' N9 111.1 110.5
O4' C1' C2' 106.7 104.8
O4' C1' H1' 109.7 110.4
N9 C1' C2' 110.9 110.4
N9 C1' H1' 109.3 110.4
C1' N9 C4 126.6 126.3
C1' N9 C8 129.4 126.3
C2' C1' H1' 109.0 110.3
C1' C2' C3' 105.7 104.1
C1' C2' H2' 110.3 110.5
C1' C2' H2'' 110.3 110.5
C4 N9 C8 104.0 107.4
N9 C4 N3 125.8 134.9
N9 C4 C5 106.6 106.0
N9 C8 N7 117.4 110.0
N9 C8 H8 120.7 125.1
N3 C4 C5 127.5 119.1
C4 N3 C2 111.7 120.6
C4 C5 C6 116.3 118.2
C4 C5 N7 110.3 107.1
N3 C2 N1 127.3 122.4
N3 C2 H2 116.4 118.8
N1 C2 H2 116.3 118.8
C2 N1 C6 120.7 121.2
N1 C6 N6 119.6 120.7
N1 C6 C5 116.6 118.4
N6 C6 C5 123.8 120.8
C6 N6 CB 121.2 120.0
C6 N6 H6 119.4 119.9
C6 C5 N7 133.4 134.7
CB N6 H6 119.4 120.0
N6 CB CA 109.8 109.4
N6 CB HB1 109.9 109.5
N6 CB HB2 109.3 109.5
OA CA CB 109.3 109.5
OA CA CS6 109.6 109.5
OA CA HA 109.8 109.5
CA OA HOA 107.7 106.8
CB CA CS6 109.3 109.4
CB CA HA 109.2 109.5
CA CB HB1 108.9 109.4
CA CB HB2 109.7 109.4
CS6 CA HA 109.6 109.5
CA CS6 CS1 119.9 120.0
CA CS6 CS5 120.1 120.0
HB1 CB HB2 109.3 109.5
CS1 CS6 CS5 120.0 120.0
CS6 CS1 CS2 120.0 120.0
CS6 CS1 HS1 120.0 120.0
CS6 CS5 CS4 119.9 120.0
CS6 CS5 HS5 120.0 120.0
CS2 CS1 HS1 120.0 120.0
CS1 CS2 CS3 120.0 120.0
CS1 CS2 HS2 120.0 120.0
CS4 CS5 HS5 120.0 120.0
CS5 CS4 CS3 120.0 120.0
CS5 CS4 HS4 120.0 120.0
CS3 CS2 HS2 120.0 120.0
CS2 CS3 CS4 120.0 120.0
CS2 CS3 HS3 119.9 120.0
CS3 CS4 HS4 120.0 120.0
CS4 CS3 HS3 120.1 120.0
C5 N7 C8 101.6 109.5
N7 C8 H8 122.0 125.0
C3' C2' H2' 109.9 110.6
C3' C2' H2'' 110.3 110.5
C2' C3' O3' 110.9 110.5
C2' C3' H3' 109.8 110.5
H2' C2' H2'' 110.3 110.5
O3' C3' H3' 110.4 110.4
C3' O3' HO3' 110.8 106.8

Torsion Angles for ABR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 235.4 240.1
OP2 P OP1 OP3 125.0 120.0
OP1 P OP2 HOP2 179.9 300.0
O5' P OP1 OP3 249.6 239.9
OP1 P O5' C5' 41.0 60.1
OP1 P OP3 HOP3 180.0 180.0
OP1 P OP2 O5' 124.6 119.9
OP1 P OP2 OP3 235.1 239.9
O5' P OP2 OP3 110.6 120.0
OP2 P O5' C5' 172.3 180.0
OP2 P OP3 HOP3 48.5 60.0
OP1 P O5' OP2 228.7 240.1
OP1 P O5' OP3 114.2 120.1
OP2 P O5' OP3 245.5 240.0
O5' P OP2 HOP2 55.4 180.1
O5' P OP3 HOP3 294.1 300.0
P O5' C5' C4' 197.0 180.0
P O5' C5' H5' 76.5 59.9
P O5' C5' H5'' 317.7 300.0
OP1 P OP3 OP2 131.5 120.0
OP1 P OP3 O5' 245.9 240.0
OP2 P OP3 O5' 114.4 120.0
OP3 P OP2 HOP2 304.8 60.1
OP3 P O5' C5' 286.8 300.0
HOP2 OP2 P O5' 55.4 180.1
HOP2 OP2 P OP3 304.8 60.1
C5' O5' P OP3 286.8 300.0
C4' C5' O5' H5' 120.5 120.0
C4' C5' O5' H5'' 239.3 240.0
O5' C5' C4' O4' 304.3 61.4
O5' C5' C4' C3' 63.8 176.9
O5' C5' C4' H4' 183.9 299.2
H5' C5' O5' H5'' 118.8 119.9
O5' C5' C4' H5' 239.6 239.9
O5' C5' C4' H5'' 120.6 120.1
H5' C5' C4' H5'' 241.1 240.1
O4' C4' C5' C3' 240.5 244.5
O4' C4' C5' H4' 120.3 122.2
C5' C4' O4' C1' 125.3 159.5
C3' C4' C5' H4' 239.8 237.6
C5' C4' C3' C2' 248.8 217.3
C5' C4' C3' O3' 128.9 98.5
C5' C4' C3' H3' 6.7 336.0
O5' C5' H5' C4' 122.3 120.1
O5' C5' H5' H5'' 241.2 240.0
C4' C5' H5' H5'' 118.9 119.9
H5' C5' C4' O4' 64.7 181.5
H5' C5' C4' C3' 184.2 296.9
H5' C5' C4' H4' 304.3 59.3
O5' C5' H5'' C4' 237.6 239.9
O5' C5' H5'' H5' 118.7 120.0
C4' C5' H5'' H5' 241.1 240.1
H5'' C5' C4' O4' 183.6 301.3
H5'' C5' C4' C3' 303.1 56.8
H5'' C5' C4' H4' 63.3 179.2
O4' C4' C5' H5' 64.7 181.5
O4' C4' C5' H5'' 183.6 301.3
C5' C4' O4' C3' 120.9 119.2
C5' C4' O4' H4' 239.7 237.8
C3' C4' O4' H4' 118.9 118.6
O4' C4' C3' C2' 10.0 336.2
O4' C4' C3' O3' 250.1 217.5
O4' C4' C3' H3' 127.9 94.9
C4' O4' C1' N9 221.9 200.7
C4' O4' C1' C2' 342.9 319.6
C4' O4' C1' H1' 100.9 78.3
C3' C4' C5' H5' 184.2 296.9
C3' C4' C5' H5'' 303.1 56.8
C5' C4' C3' O4' 238.8 241.1
C5' C4' C3' H4' 120.0 122.4
O4' C4' C3' H4' 241.2 241.3
C3' C4' O4' C1' 4.4 40.3
C1' C2' C3' C4' 340.2 359.9
C4' C3' C2' H2' 99.2 118.6
C4' C3' C2' H2'' 221.0 241.3
C2' C3' C4' O3' 119.9 118.8
C2' C3' C4' H3' 242.1 241.3
O3' C3' C4' H3' 122.2 122.5
C4' C3' O3' HO3' 180.0 178.1
H4' C4' C5' H5' 304.3 59.3
H4' C4' C5' H5'' 63.3 179.2
C5' C4' H4' O4' 121.3 122.2
C5' C4' H4' C3' 239.3 237.3
O4' C4' H4' C3' 118.0 115.1
H4' C4' O4' C1' 245.6 281.7
H4' C4' C3' C2' 128.8 94.9
H4' C4' C3' O3' 8.9 336.1
H4' C4' C3' H3' 246.7 213.6
C1' O4' C4' C3' 4.4 40.3
C1' O4' C4' H4' 245.6 281.7
N9 C1' O4' C2' 238.9 241.1
N9 C1' O4' H1' 120.9 122.4
O4' C1' N9 C4 251.2 205.2
O4' C1' N9 C8 71.6 25.4
C2' C1' O4' H1' 242.0 241.3
O4' C1' C2' C3' 23.0 24.0
O4' C1' C2' H2' 264.2 265.3
O4' C1' C2' H2'' 142.2 142.7
O4' C1' N9 C2' 118.6 115.4
O4' C1' N9 H1' 238.8 237.6
C2' C1' N9 H1' 120.3 122.2
N9 C1' C2' C3' 144.2 142.9
N9 C1' C2' H2' 25.4 24.2
N9 C1' C2' H2'' 263.4 261.6
C4 N9 C1' C8 179.5 179.8
C1' N9 C4 N3 0.4 0.7
C1' N9 C4 C5 180.4 179.8
C1' N9 C8 N7 179.7 180.0
C1' N9 C8 H8 359.5 360.0
C4' C3' C2' C1' 340.2 359.9
O4' C1' C2' N9 238.8 241.0
O4' C1' C2' H1' 118.4 118.8
N9 C1' C2' H1' 239.6 237.7
C2' C1' N9 C4 132.6 89.8
C2' C1' N9 C8 313.1 270.0
C3' C2' C1' H2' 118.8 118.7
C3' C2' C1' H2'' 240.8 241.3
C1' C2' C3' O3' 100.0 118.7
C1' C2' C3' H3' 222.4 241.3
H2' C2' C1' H2'' 122.0 122.6
O4' C1' H1' N9 122.0 122.5
O4' C1' H1' C2' 243.5 244.7
N9 C1' H1' C2' 121.4 122.2
H1' C1' N9 C4 12.4 327.6
H1' C1' N9 C8 192.8 147.8
H1' C1' C2' C3' 264.6 265.2
H1' C1' C2' H2' 145.8 146.5
H1' C1' C2' H2'' 23.8 23.9
C4 N9 C1' C2' 132.6 89.8
C4 N9 C1' H1' 12.4 327.6
C1' N9 C4 C8 180.4 180.2
C4 N9 C8 N7 0.0 0.2
C4 N9 C8 H8 179.8 180.2
N3 C4 N9 C5 180.0 180.9
N9 C4 N3 C2 180.0 179.6
N9 C4 C5 C6 180.1 180.1
N9 C4 C5 N7 360.0 0.4
C8 N9 C1' C2' 313.1 270.0
C8 N9 C1' H1' 192.8 147.8
C1' N9 C8 C4 179.6 179.8
C8 N9 C4 N3 180.0 180.5
C8 N9 C4 C5 0.0 359.6
C5 N7 C8 N9 360.0 0.1
N7 C8 N9 H8 180.2 180.0
N3 C4 N9 C8 180.0 180.5
N9 C4 N3 C5 180.0 179.1
N3 C4 C5 C6 0.1 359.4
N3 C4 C5 N7 180.0 179.7
C4 N3 C2 N1 0.0 359.7
C4 N3 C2 H2 180.2 179.7
C5 C4 N9 C8 0.0 359.6
N9 C4 C5 N3 180.0 180.7
C5 C4 N3 C2 359.9 0.6
N1 C6 C5 C4 359.9 0.3
N6 C6 C5 C4 180.3 180.3
C6 C5 C4 N7 180.1 179.7
C4 C5 N7 C8 0.0 359.7
C2 N3 C4 C5 359.9 0.6
N1 C2 N3 H2 179.8 180.0
N3 C2 N1 C6 360.0 0.0
N3 C2 N1 H2 180.2 180.0
C2 N1 C6 N6 179.7 180.0
C2 N1 C6 C5 0.0 359.9
N3 C2 H2 N1 179.8 180.0
H2 C2 N1 C6 179.8 180.0
C4 C5 C6 N1 359.9 0.3
C6 N1 C2 H2 179.8 180.0
N6 C6 N1 C5 179.6 180.0
N1 C6 N6 CB 180.8 0.0
N1 C6 N6 H6 0.5 180.0
N1 C6 C5 N7 180.1 179.9
C4 C5 C6 N6 180.3 180.3
N1 C6 N6 C5 180.4 180.0
N6 C6 C5 N7 0.4 359.9
CB N6 C6 H6 180.4 180.0
C6 N6 CB CA 86.1 180.0
C6 N6 CB HB1 326.4 299.9
C6 N6 CB HB2 206.5 60.0
C4 C5 C6 N7 179.9 180.4
N1 C6 C5 N6 179.6 180.0
C5 C6 N6 CB 0.5 180.1
C5 C6 N6 H6 180.1 0.0
C6 C5 N7 C8 179.9 180.1
CB N6 C6 C5 0.5 180.1
C6 N6 CB H6 179.6 180.0
OA CA CB N6 305.8 300.0
N6 CB CA CS6 185.7 180.0
N6 CB CA HA 65.9 60.0
CA CB N6 HB1 119.7 240.0
CA CB N6 HB2 239.6 119.9
HB1 CB N6 HB2 119.9 239.9
H6 N6 C6 C5 180.1 0.0
C6 N6 H6 CB 180.3 180.0
H6 N6 CB CA 266.4 0.0
H6 N6 CB HB1 146.7 120.0
H6 N6 CB HB2 26.8 240.1
N6 CB CA OA 305.8 300.0
CB CA OA CS6 240.1 240.0
CB CA OA HA 119.7 120.0
OA CA CB HB1 66.0 180.0
OA CA CB HB2 185.6 60.0
CS6 CA OA HA 239.6 240.0
OA CA CS6 CS1 304.1 330.0
OA CA CS6 CS5 124.1 149.7
CA CB N6 H6 266.4 0.0
N6 CB CA HB1 239.7 120.0
N6 CB CA HB2 120.1 240.0
OA CA CB CS6 120.0 120.0
OA CA CB HA 239.9 240.0
CB CA OA HOA 329.4 300.0
CS6 CA CB HA 119.8 120.0
CB CA CS6 CS1 63.9 90.0
CB CA CS6 CS5 244.0 269.7
HB1 CB CA HB2 240.4 120.1
OA CA CS6 CB 240.1 240.0
OA CA CS6 HA 120.5 120.0
CS6 CA OA HOA 89.3 60.0
CB CA CS6 HA 240.4 240.0
CS6 CA CB HB1 306.0 60.0
CS6 CA CB HB2 65.6 300.0
CS1 CS6 CA CS5 179.9 180.3
CA CS6 CS1 CS2 180.0 180.0
CA CS6 CS1 HS1 360.0 360.0
CA CS6 CS5 CS4 179.9 179.8
CA CS6 CS5 HS5 360.0 0.2
OA CA HA CB 119.9 120.0
OA CA HA CS6 239.6 240.0
HA CA OA HOA 209.7 180.0
CB CA HA CS6 119.7 120.0
HA CA CB HB1 186.2 300.0
HA CA CB HB2 305.7 180.0
HA CA CS6 CS1 183.5 210.0
HA CA CS6 CS5 3.6 29.7
HOA OA CA CB 329.4 300.0
HOA OA CA CS6 89.3 60.0
HOA OA CA HA 209.7 180.0
HB1 CB N6 H6 146.7 120.0
N6 CB HB1 CA 120.2 240.0
N6 CB HB1 HB2 240.1 120.1
HB1 CB CA CS6 306.0 60.0
HB1 CB CA HA 186.2 300.0
CA CB HB1 HB2 119.8 240.0
HB2 CB N6 H6 26.8 240.1
N6 CB HB2 CA 239.6 120.0
N6 CB HB2 HB1 120.3 239.9
HB2 CB CA CS6 65.6 300.0
HB2 CB CA HA 305.7 180.0
CA CB HB2 HB1 240.7 120.0
CS1 CS6 CA HA 183.5 210.0
CA CS6 CS1 CS5 180.1 179.7
CS1 CS6 CS5 CS4 360.0 359.5
CS1 CS6 CS5 HS5 180.0 179.9
CS2 CS1 CS6 HS1 180.0 180.0
CS6 CS1 CS2 CS3 0.1 0.0
CS6 CS1 CS2 HS2 180.0 179.9
CS5 CS6 CA HA 3.6 29.7
CA CS6 CS5 CS1 179.9 180.3
CS5 CS6 CS1 CS2 360.0 0.2
CS5 CS6 CS1 HS1 179.9 180.3
CS4 CS5 CS6 HS5 179.9 179.7
CS6 CS5 CS4 CS3 0.0 0.4
CS6 CS5 CS4 HS4 180.0 180.2
CS2 CS1 CS6 CS5 360.0 0.2
CS6 CS1 CS2 HS1 180.0 180.0
CS3 CS2 CS1 HS2 180.1 180.2
CS1 CS2 CS3 CS4 359.9 359.9
CS1 CS2 CS3 HS3 180.0 180.0
HS1 CS1 CS6 CS5 179.9 180.3
CS6 CS1 HS1 CS2 180.0 180.0
HS1 CS1 CS2 CS3 180.1 180.0
HS1 CS1 CS2 HS2 0.0 359.9
CS6 CS5 CS4 HS5 180.1 180.3
CS2 CS3 CS4 CS5 360.0 359.9
CS3 CS4 CS5 HS4 180.1 180.2
CS5 CS4 CS3 HS3 179.9 179.8
CS6 CS5 HS5 CS4 179.9 179.7
HS5 CS5 CS4 CS3 180.0 180.0
HS5 CS5 CS4 HS4 359.9 359.9
CS3 CS2 CS1 HS1 180.1 180.0
CS1 CS2 CS3 HS2 179.9 179.8
CS5 CS4 CS3 CS2 360.0 359.9
CS2 CS3 CS4 HS4 180.1 180.1
CS4 CS3 CS2 HS3 179.9 179.9
HS2 CS2 CS1 HS1 0.0 359.9
CS1 CS2 HS2 CS3 180.1 180.2
HS2 CS2 CS3 CS4 180.0 180.0
HS2 CS2 CS3 HS3 0.1 0.1
CS3 CS4 CS5 HS5 180.0 180.0
CS5 CS4 CS3 HS4 179.9 179.8
CS4 CS3 CS2 HS2 180.0 180.0
CS2 CS3 CS4 HS3 180.1 180.1
HS4 CS4 CS5 HS5 359.9 359.9
CS5 CS4 HS4 CS3 180.1 180.2
HS4 CS4 CS3 HS3 0.0 0.0
HS3 CS3 CS2 HS2 0.1 0.1
CS2 CS3 HS3 CS4 179.9 179.9
HS3 CS3 CS4 HS4 0.0 0.0
N9 C8 N7 C5 360.0 0.1
C4 C5 N7 C6 180.1 179.6
C5 N7 C8 H8 180.1 180.1
N9 C8 N7 H8 179.8 180.0
N9 C8 H8 N7 180.2 180.0
C2' C3' C4' H4' 128.8 94.9
C4' C3' C2' O3' 240.1 241.2
C4' C3' C2' H3' 117.8 118.6
C3' C2' C1' H1' 264.6 265.2
C1' C2' C3' H2' 241.0 241.3
C1' C2' C3' H2'' 119.2 118.6
H2' C2' C3' H2'' 238.2 237.3
O3' C3' C2' H3' 237.7 237.4
C2' C3' O3' HO3' 63.6 63.3
H2' C2' C1' H1' 145.8 146.5
C1' C2' H2' C3' 116.1 114.7
C1' C2' H2' H2'' 238.0 237.4
C3' C2' H2' H2'' 121.9 122.7
H2' C2' C3' O3' 219.0 237.3
H2' C2' C3' H3' 341.3 359.9
H2'' C2' C1' H1' 23.8 23.9
C1' C2' H2'' C3' 243.6 245.3
C1' C2' H2'' H2' 122.0 122.6
C3' C2' H2'' H2' 238.4 237.3
H2'' C2' C3' O3' 340.8 0.0
H2'' C2' C3' H3' 103.2 122.6
O3' C3' C4' H4' 8.9 336.1
C4' C3' O3' C2' 116.3 114.9
C4' C3' O3' H3' 238.3 237.5
O3' C3' C2' H2' 219.0 237.3
O3' C3' C2' H2'' 340.8 0.0
C2' C3' O3' H3' 122.0 122.6
H3' C3' C4' H4' 246.7 213.6
C4' C3' H3' C2' 245.1 245.2
C4' C3' H3' O3' 122.4 122.6
H3' C3' C2' H2' 341.3 359.9
H3' C3' C2' H2'' 103.2 122.6
C2' C3' H3' O3' 237.4 237.4
H3' C3' O3' HO3' 301.7 300.7
HO3' O3' C3' H3' 301.7 300.7