PDB Chemical Component ABP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ABP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PB O1B 1.487 1.480
PB O2B 1.508 1.610
PB O3B 1.479 1.609
PB O3A 1.631 1.610
O2B HOB2 0.950 0.967
O3B HOB3 0.950 0.967
PA O1A 1.507 1.480
PA O2A 1.501 1.610
PA O3A 1.635 1.608
PA O5' 1.599 1.610
O2A HOA2 0.951 0.967
O5' C5' 1.429 1.428
C5' C4' 1.539 1.530
C5' H5'1 1.115 1.089
C5' H5'2 1.114 1.090
C4' O4' 1.447 1.444
C4' C3' 1.527 1.545
C4' H4' 1.116 1.089
O4' C1' 1.458 1.445
C3' O3' 1.444 1.430
C3' C2' 1.525 1.547
C3' H3' 1.114 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.442 1.429
C2' C1' 1.544 1.544
C2' H2' 1.115 1.090
O2' HO2' 0.968 0.967
C1' N9 1.515 1.464
C1' H1' 1.115 1.089
N9 C8 1.423 1.364
N9 C4 1.390 1.373
C8 BR8 1.914 1.891
C8 N7 1.308 1.302
N7 C5 1.391 1.355
C5 C6 1.413 1.404
C5 C4 1.370 1.406
C6 N6 1.332 1.384
C6 N1 1.348 1.330
N6 HN61 1.013 0.970
N6 HN62 1.011 0.970
N1 C2 1.324 1.320
C2 N3 1.329 1.317
C2 H2 1.103 1.080
N3 C4 1.371 1.329

Bond Angles for ABP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1B PB O2B 113.3 109.5
O1B PB O3B 111.7 109.5
O1B PB O3A 108.0 109.5
O2B PB O3B 113.7 109.5
O2B PB O3A 105.7 109.5
PB O2B HOB2 113.4 106.8
O3B PB O3A 103.5 109.5
PB O3B HOB3 111.7 106.8
PB O3A PA 110.7 106.8
O1A PA O2A 119.6 109.4
O1A PA O3A 107.7 109.5
O1A PA O5' 101.3 109.5
O2A PA O3A 107.6 109.5
O2A PA O5' 109.6 109.4
PA O2A HOA2 119.6 106.8
O3A PA O5' 110.9 109.6
PA O5' C5' 126.5 106.9
O5' C5' C4' 112.0 109.5
O5' C5' H5'1 111.3 109.5
O5' C5' H5'2 111.3 109.4
C4' C5' H5'1 111.2 109.5
C4' C5' H5'2 111.3 109.5
C5' C4' O4' 113.0 110.4
C5' C4' C3' 113.0 110.4
C5' C4' H4' 103.7 110.4
H5'1 C5' H5'2 99.1 109.5
O4' C4' C3' 106.8 104.8
O4' C4' H4' 110.2 110.4
C4' O4' C1' 108.5 105.2
C3' C4' H4' 110.2 110.3
C4' C3' O3' 111.1 110.5
C4' C3' C2' 105.0 104.1
C4' C3' H3' 113.1 110.5
O4' C1' C2' 108.4 104.9
O4' C1' N9 112.4 110.4
O4' C1' H1' 111.1 110.3
O3' C3' C2' 114.2 110.6
O3' C3' H3' 103.6 110.4
C3' O3' HO3' 111.2 106.7
C2' C3' H3' 110.0 110.6
C3' C2' O2' 110.5 110.5
C3' C2' C1' 104.4 104.0
C3' C2' H2' 112.2 110.5
O2' C2' C1' 109.7 110.8
O2' C2' H2' 107.1 110.5
C2' O2' HO2' 106.8 106.8
C1' C2' H2' 113.0 110.5
C2' C1' N9 116.6 110.4
C2' C1' H1' 106.2 110.4
N9 C1' H1' 101.8 110.4
C1' N9 C8 134.5 126.3
C1' N9 C4 118.8 126.3
C8 N9 C4 104.3 107.4
N9 C8 BR8 129.3 125.0
N9 C8 N7 112.4 110.0
N9 C4 C5 107.2 106.0
N9 C4 N3 125.7 134.9
BR8 C8 N7 118.3 125.1
C8 N7 C5 105.4 109.5
N7 C5 C6 131.7 134.7
N7 C5 C4 110.6 107.1
C6 C5 C4 116.9 118.2
C5 C6 N6 122.5 120.8
C5 C6 N1 118.0 118.5
C5 C4 N3 126.0 119.1
N6 C6 N1 119.2 120.7
C6 N6 HN61 119.4 120.0
C6 N6 HN62 120.3 120.0
C6 N1 C2 118.7 121.2
HN61 N6 HN62 120.1 120.0
N1 C2 N3 129.3 122.5
N1 C2 H2 115.1 118.8
N3 C2 H2 115.6 118.7
C2 N3 C4 110.8 120.6

Torsion Angles for ABP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2B PB O1B O3B 230.0 120.0
O2B PB O1B O3A 116.8 240.0
O1B PB O2B HOB2 180.0 300.0
O3B PB O1B O3A 246.8 120.0
O1B PB O3B HOB3 180.0 180.0
O1B PB O3A PA 182.1 60.0
O1B PB O2B O3B 129.0 240.0
O1B PB O2B O3A 241.8 120.0
O3B PB O2B O3A 112.9 240.0
O2B PB O3B HOB3 309.8 60.0
O2B PB O3A PA 60.5 180.0
O1B PB O3B O2B 230.2 120.0
O1B PB O3B O3A 116.0 240.0
O2B PB O3B O3A 245.8 120.0
O3B PB O2B HOB2 51.0 60.0
O3B PB O3A PA 300.7 300.0
O1B PB O3A O2B 121.6 240.0
O1B PB O3A O3B 241.4 120.0
O2B PB O3A O3B 119.8 240.0
O3A PB O2B HOB2 298.2 180.0
O3A PB O3B HOB3 64.0 300.0
O1A PA O3A PB 62.9 60.0
O2A PA O3A PB 292.8 300.0
PB O3A PA O5' 172.9 180.0
HOB2 O2B PB O3B 51.0 60.0
HOB2 O2B PB O3A 298.2 180.0
HOB3 O3B PB O3A 64.0 300.0
PB O3A PA O1A 62.9 60.0
O2A PA O1A O3A 123.1 120.0
O2A PA O1A O5' 239.5 240.1
O1A PA O2A HOA2 180.0 179.9
O3A PA O1A O5' 116.4 120.1
O1A PA O5' C5' 235.0 300.1
PB O3A PA O2A 292.8 300.0
O1A PA O2A O3A 236.9 240.0
O1A PA O2A O5' 116.2 119.9
O3A PA O2A O5' 239.3 239.9
O2A PA O5' C5' 2.3 60.0
O1A PA O3A O2A 130.2 120.0
O1A PA O3A O5' 250.1 240.0
O2A PA O3A O5' 119.9 120.0
O3A PA O2A HOA2 303.2 299.9
O3A PA O5' C5' 121.0 180.0
O1A PA O5' O2A 232.7 240.1
O1A PA O5' O3A 114.0 120.0
O2A PA O5' O3A 241.3 239.9
O5' PA O2A HOA2 63.8 60.0
PA O5' C5' C4' 260.6 180.0
PA O5' C5' H5'1 25.8 60.0
PA O5' C5' H5'2 135.3 300.0
HOA2 O2A PA O3A 303.2 299.9
HOA2 O2A PA O5' 63.8 60.0
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 246.3 61.5
O5' C5' C4' C3' 7.8 176.9
O5' C5' C4' H4' 127.1 299.1
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.2 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 238.5 244.6
O4' C4' C5' H4' 119.3 122.4
C5' C4' O4' C1' 148.4 159.4
C3' C4' C5' H4' 240.7 237.7
C5' C4' C3' O3' 84.2 98.3
C5' C4' C3' C2' 208.2 217.1
C5' C4' C3' H3' 328.1 335.8
O5' C5' H5'1 C4' 234.3 120.0
O5' C5' H5'1 H5'2 117.2 240.0
C4' C5' H5'1 H5'2 242.9 120.0
H5'1 C5' C4' O4' 121.1 181.5
H5'1 C5' C4' C3' 242.5 296.9
H5'1 C5' C4' H4' 1.8 59.1
O5' C5' H5'2 C4' 125.7 240.0
O5' C5' H5'2 H5'1 242.8 120.0
C4' C5' H5'2 H5'1 117.1 240.0
H5'2 C5' C4' O4' 11.6 301.5
H5'2 C5' C4' C3' 133.1 56.9
H5'2 C5' C4' H4' 252.4 179.1
O4' C4' C5' H5'1 121.1 181.5
O4' C4' C5' H5'2 11.6 301.5
C5' C4' O4' C3' 124.8 118.9
C5' C4' O4' H4' 244.6 237.7
C3' C4' O4' H4' 119.7 118.8
O4' C4' C3' O3' 209.1 217.2
O4' C4' C3' C2' 333.0 335.9
O4' C4' C3' H3' 93.0 94.7
C4' O4' C1' C2' 349.2 319.5
C4' O4' C1' N9 218.9 200.6
C4' O4' C1' H1' 105.6 78.4
C3' C4' C5' H5'1 242.5 296.9
C3' C4' C5' H5'2 133.1 56.9
C5' C4' C3' O4' 235.1 241.2
C5' C4' C3' H4' 115.4 122.3
O4' C4' C3' H4' 240.3 241.1
C3' C4' O4' C1' 23.5 40.5
O3' C3' C4' C2' 236.1 241.3
O3' C3' C4' H3' 116.1 122.5
C4' C3' O3' HO3' 179.9 180.0
C2' C3' C4' H3' 240.1 241.2
C4' C3' C2' O2' 261.8 241.2
C4' C3' C2' C1' 19.7 0.1
C4' C3' C2' H2' 142.4 118.6
H4' C4' C5' H5'1 1.8 59.1
H4' C4' C5' H5'2 252.4 179.1
C5' C4' H4' O4' 121.2 122.3
C5' C4' H4' C3' 238.8 237.7
O4' C4' H4' C3' 117.7 115.4
H4' C4' O4' C1' 263.8 281.7
H4' C4' C3' O3' 328.8 336.0
H4' C4' C3' C2' 92.7 94.8
H4' C4' C3' H3' 212.7 213.5
C1' O4' C4' C3' 23.5 40.5
C1' O4' C4' H4' 263.8 281.7
C3' C2' C1' O4' 353.8 23.9
O2' C2' C1' O4' 112.2 142.6
O4' C1' C2' H2' 231.6 265.3
C2' C1' O4' N9 130.3 118.9
C2' C1' O4' H1' 243.6 241.1
N9 C1' O4' H1' 113.3 122.2
O4' C1' N9 C8 128.6 207.1
O4' C1' N9 C4 288.1 27.0
O3' C3' C4' H4' 328.8 336.0
C4' C3' O3' C2' 118.5 114.7
C4' C3' O3' H3' 238.2 237.4
C2' C3' O3' H3' 119.6 122.7
O3' C3' C2' O2' 23.8 359.9
O3' C3' C2' C1' 141.6 118.8
O3' C3' C2' H2' 264.3 237.3
C2' C3' C4' H4' 92.7 94.8
C4' C3' C2' O3' 238.0 241.3
C4' C3' C2' H3' 122.0 118.7
O4' C1' C2' C3' 353.8 23.9
O3' C3' C2' H3' 244.0 237.4
C2' C3' O3' HO3' 61.4 65.3
O2' C2' C3' C1' 242.1 241.1
O2' C2' C3' H2' 119.4 122.6
C3' C2' O2' HO2' 344.0 298.5
C1' C2' C3' H2' 237.3 241.5
C3' C2' C1' N9 121.8 142.8
C3' C2' C1' H1' 234.4 265.0
H3' C3' C4' H4' 212.7 213.5
C4' C3' H3' O3' 120.5 122.5
C4' C3' H3' C2' 243.0 245.3
O3' C3' H3' C2' 122.5 122.7
H3' C3' O3' HO3' 301.8 302.5
H3' C3' C2' O2' 139.8 122.5
H3' C3' C2' C1' 257.6 241.4
H3' C3' C2' H2' 20.3 359.9
HO3' O3' C3' C2' 61.4 65.3
HO3' O3' C3' H3' 301.8 302.5
O4' C1' C2' O2' 112.2 142.6
O2' C2' C3' H3' 139.8 122.5
C3' C2' O2' C1' 114.5 114.7
C3' C2' O2' H2' 237.5 237.4
C1' C2' O2' H2' 123.0 122.8
O2' C2' C1' N9 240.2 261.4
O2' C2' C1' H1' 352.7 23.7
O4' C1' C2' N9 232.1 241.1
O4' C1' C2' H1' 119.5 118.9
C1' C2' C3' H3' 257.6 241.4
C3' C2' C1' O2' 241.6 241.3
C3' C2' C1' H2' 122.2 118.5
O2' C2' C1' H2' 240.6 237.2
C1' C2' O2' HO2' 229.4 183.8
N9 C1' C2' H1' 247.4 237.7
C2' C1' N9 C8 2.6 91.6
C2' C1' N9 C4 162.1 271.5
H2' C2' C3' H3' 20.3 359.9
C3' C2' H2' O2' 121.4 122.6
C3' C2' H2' C1' 242.3 245.5
O2' C2' H2' C1' 120.9 122.9
H2' C2' O2' HO2' 106.5 61.1
H2' C2' C1' N9 359.6 24.2
H2' C2' C1' H1' 112.2 146.5
HO2' O2' C2' C1' 229.4 183.8
HO2' O2' C2' H2' 106.5 61.1
O4' C1' N9 C2' 126.0 115.5
O4' C1' N9 H1' 241.1 237.8
N9 C1' C2' H2' 359.6 24.2
C2' C1' N9 H1' 115.1 122.3
C8 N9 C1' C4 200.5 180.1
C1' N9 C8 BR8 336.5 360.0
C1' N9 C8 N7 158.3 179.9
C1' N9 C4 C5 197.0 180.3
C1' N9 C4 N3 5.0 0.1
O4' C1' H1' C2' 242.3 244.5
O4' C1' H1' N9 119.8 122.3
H1' C1' C2' H2' 112.2 146.5
C2' C1' H1' N9 237.5 237.8
H1' C1' N9 C8 247.5 329.3
H1' C1' N9 C4 47.0 149.2
C8 N9 C1' H1' 247.5 329.3
C1' N9 C8 C4 161.5 179.9
C8 N9 C4 C5 2.0 0.2
C8 N9 C4 N3 170.1 180.0
BR8 C8 N9 N7 178.1 180.1
N9 C8 N7 C5 3.0 359.7
C4 N9 C1' H1' 47.0 149.2
C1' N9 C4 C8 194.9 180.1
C4 N9 C8 BR8 174.9 180.1
C4 N9 C8 N7 356.8 0.0
N7 C5 C4 N9 359.6 359.6
C6 C5 C4 N9 170.9 180.4
C5 C4 N9 N3 191.9 180.2
C2 N3 C4 N9 191.7 180.0
BR8 C8 N9 C4 174.9 180.1
N9 C8 BR8 N7 182.0 179.9
BR8 C8 N7 C5 184.6 179.7
N7 C8 N9 C4 356.8 0.0
N9 C8 N7 BR8 178.4 180.1
C8 N7 C5 C6 188.9 179.5
C8 N7 C5 C4 358.4 0.4
N9 C4 C5 N7 359.6 359.6
C6 C5 N7 C4 190.4 179.1
N7 C5 C6 N6 339.2 0.7
N7 C5 C6 N1 165.1 180.5
N7 C5 C4 N3 191.6 179.8
N9 C4 C5 C6 170.9 180.4
N7 C5 C6 C4 169.0 181.0
C6 C5 C4 N3 2.9 0.5
N6 C6 C5 N1 174.1 180.2
C5 C6 N6 HN61 336.2 179.8
C5 C6 N6 HN62 161.5 359.4
C5 C6 N1 C2 4.9 0.2
N9 C4 C5 N3 168.0 179.8
N7 C5 C4 C6 188.7 179.3
C4 C5 C6 N6 170.2 179.7
C4 C5 C6 N1 356.0 359.5
C2 N3 C4 C5 357.6 359.7
N6 C6 C5 C4 170.2 179.7
C5 C6 N6 N1 185.9 179.8
N6 C6 N1 C2 190.6 180.0
HN61 N6 C6 HN62 174.7 180.4
N1 C6 C5 C4 356.0 359.5
C5 C6 N1 N6 174.3 180.2
N1 C6 N6 HN61 150.3 360.0
N1 C6 N6 HN62 335.6 179.6
C6 N1 C2 N3 354.8 0.1
C6 N1 C2 H2 174.9 180.1
HN61 N6 C6 N1 150.3 360.0
C6 N6 HN61 HN62 185.3 179.6
HN62 N6 C6 N1 335.6 179.6
C6 N6 HN62 HN61 174.7 180.4
N3 C2 N1 H2 180.0 180.1
N1 C2 N3 C4 3.6 359.9
N9 C4 N3 C2 191.7 180.0
C5 C4 N3 C2 357.6 359.7
N1 C2 N3 H2 180.0 179.9
N1 C2 H2 N3 180.0 180.1
H2 C2 N3 C4 183.6 180.0
N9 C4 N3 C5 194.1 180.3
C4 N3 C2 H2 183.6 180.0