PDB Chemical Component ABM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ABM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P CM 1.811 1.823
P O2P 1.555 1.479
P O3P 1.528 1.609
P O5' 1.627 1.610
CM HM1 1.115 1.090
CM HM2 1.116 1.090
CM HM3 1.114 1.090
O3P HOP3 0.950 0.968
O5' C5' 1.482 1.428
C5' C4' 1.561 1.529
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.477 1.438
C4' C3' 1.568 1.541
C4' H4' 1.114 1.089
O4' C1' 1.471 1.443
C3' O3' 1.451 1.429
C3' C2' 1.535 1.551
C3' H3' 1.114 1.090
O3' HO3' 0.950 0.966
C2' O2' 1.463 1.428
C2' C1' 1.559 1.550
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C1' N9 1.501 1.464
C1' H1' 1.116 1.090
N9 C8 1.376 1.363
N9 C4 1.347 1.372
C8 N7 1.320 1.302
C8 H8 1.103 1.080
N7 C5 1.389 1.355
C5 C6 1.419 1.405
C5 C4 1.377 1.405
C6 N6 1.324 1.384
C6 N1 1.337 1.328
N6 HN61 1.021 0.970
N6 HN62 1.021 0.969
N1 C2 1.347 1.320
C2 N3 1.354 1.317
C2 H2 1.103 1.080
N3 C4 1.338 1.328

Bond Angles for ABM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CM P O2P 104.4 109.4
CM P O3P 104.9 109.5
CM P O5' 103.1 109.4
P CM HM1 104.4 109.5
P CM HM2 114.1 109.5
P CM HM3 114.1 109.5
O2P P O3P 118.8 109.5
O2P P O5' 113.1 109.5
O3P P O5' 110.6 109.5
P O3P HOP3 104.8 106.8
P O5' C5' 124.0 106.8
HM1 CM HM2 114.1 109.5
HM1 CM HM3 114.2 109.4
HM2 CM HM3 96.4 109.5
O5' C5' C4' 113.7 109.5
O5' C5' H5'1 110.7 109.4
O5' C5' H5'2 110.7 109.4
C4' C5' H5'1 110.6 109.5
C4' C5' H5'2 110.6 109.5
C5' C4' O4' 112.6 109.9
C5' C4' C3' 113.4 109.9
C5' C4' H4' 103.8 109.9
H5'1 C5' H5'2 99.6 109.5
O4' C4' C3' 107.5 107.4
O4' C4' H4' 110.1 109.9
C4' O4' C1' 110.5 107.0
C3' C4' H4' 109.3 109.8
C4' C3' O3' 109.5 110.9
C4' C3' C2' 105.8 104.0
C4' C3' H3' 111.5 110.4
O4' C1' C2' 107.2 103.6
O4' C1' N9 109.0 110.6
O4' C1' H1' 112.5 110.6
O3' C3' C2' 108.3 110.5
O3' C3' H3' 109.0 110.4
C3' O3' HO3' 109.5 106.8
C2' C3' H3' 112.6 110.5
C3' C2' O2' 110.6 110.8
C3' C2' C1' 105.9 102.1
C3' C2' H2' 112.4 111.0
O2' C2' C1' 113.0 110.9
O2' C2' H2' 105.1 110.9
C2' O2' HO2' 110.6 106.8
C1' C2' H2' 110.0 110.8
C2' C1' N9 112.6 110.8
C2' C1' H1' 108.8 110.6
N9 C1' H1' 106.9 110.5
C1' N9 C8 129.8 126.2
C1' N9 C4 124.6 126.3
C8 N9 C4 104.8 107.5
N9 C8 N7 114.5 110.0
N9 C8 H8 124.6 125.0
N9 C4 C5 107.6 106.0
N9 C4 N3 125.1 134.9
N7 C8 H8 120.9 125.0
C8 N7 C5 102.7 109.4
N7 C5 C6 132.4 134.7
N7 C5 C4 110.3 107.1
C6 C5 C4 116.8 118.1
C5 C6 N6 123.8 120.7
C5 C6 N1 116.8 118.4
C5 C4 N3 126.9 119.1
N6 C6 N1 118.6 120.8
C6 N6 HN61 123.8 120.0
C6 N6 HN62 107.1 120.0
C6 N1 C2 118.0 121.2
HN61 N6 HN62 107.0 120.0
N1 C2 N3 129.2 122.4
N1 C2 H2 115.0 118.8
N3 C2 H2 115.7 118.8
C2 N3 C4 109.5 120.7

Torsion Angles for ABM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P CM O3P 125.7 120.0
O2P P CM O5' 241.5 240.0
O3P P CM O5' 115.9 120.0
CM P O3P HOP3 180.0 300.0
CM P O5' C5' 213.6 180.0
HM1 CM P HM2 234.8 240.0
HM1 CM P HM3 125.3 120.0
HM2 CM P HM3 250.5 240.0
CM P O2P O3P 243.6 240.0
CM P O2P O5' 111.4 120.0
O2P P CM HM1 180.0 60.0
O2P P CM HM2 305.3 180.0
O2P P CM HM3 54.7 300.0
O3P P O2P O5' 227.7 239.9
O2P P O3P HOP3 63.9 180.0
O2P P O5' C5' 325.8 299.9
CM P O3P O2P 116.1 120.0
CM P O3P O5' 249.4 240.0
O3P P CM HM1 54.3 300.0
O3P P CM HM2 179.6 60.0
O3P P CM HM3 289.0 180.0
O2P P O3P O5' 133.4 120.1
O3P P O5' C5' 101.9 60.0
CM P O5' O2P 247.8 240.1
CM P O5' O3P 111.7 120.0
O5' P CM HM1 298.5 180.0
O5' P CM HM2 63.7 300.0
O5' P CM HM3 173.2 60.0
O2P P O5' O3P 223.8 239.9
O5' P O3P HOP3 290.6 60.0
P O5' C5' C4' 137.9 180.0
P O5' C5' H5'1 263.2 300.0
P O5' C5' H5'2 12.6 60.0
HM1 CM P O2P 180.0 60.0
HM1 CM P O3P 54.3 300.0
HM1 CM P O5' 298.5 180.0
P CM HM1 HM2 125.2 120.0
P CM HM1 HM3 234.7 240.0
HM2 CM HM1 HM3 109.5 120.0
HM2 CM P O2P 305.3 180.0
HM2 CM P O3P 179.6 60.0
HM2 CM P O5' 63.7 300.0
P CM HM2 HM1 240.1 240.0
P CM HM2 HM3 120.0 120.0
HM1 CM HM2 HM3 239.9 240.0
HM3 CM P O2P 54.7 300.0
HM3 CM P O3P 289.0 180.0
HM3 CM P O5' 173.2 60.0
P CM HM3 HM1 120.0 120.0
P CM HM3 HM2 240.0 240.0
HM1 CM HM3 HM2 120.0 120.0
HOP3 O3P P O5' 290.6 60.0
C4' C5' O5' H5'1 234.7 240.0
C4' C5' O5' H5'2 125.3 120.0
O5' C5' C4' O4' 69.3 61.7
O5' C5' C4' C3' 191.7 179.7
O5' C5' C4' H4' 310.2 300.7
H5'1 C5' O5' H5'2 250.5 240.0
O5' C5' C4' H5'1 125.3 120.0
O5' C5' C4' H5'2 234.7 240.0
H5'1 C5' C4' H5'2 109.4 120.0
O4' C4' C5' C3' 237.6 242.0
O4' C4' C5' H4' 119.1 121.1
C5' C4' O4' C1' 129.2 145.9
C3' C4' C5' H4' 241.5 239.1
C5' C4' C3' O3' 126.2 119.8
C5' C4' C3' C2' 242.7 238.6
C5' C4' C3' H3' 5.4 357.1
O5' C5' H5'1 C4' 233.0 240.0
O5' C5' H5'1 H5'2 116.6 119.9
C4' C5' H5'1 H5'2 243.5 240.0
H5'1 C5' C4' O4' 304.1 301.8
H5'1 C5' C4' C3' 66.4 59.8
H5'1 C5' C4' H4' 185.0 180.7
O5' C5' H5'2 C4' 127.0 120.0
O5' C5' H5'2 H5'1 243.5 240.1
C4' C5' H5'2 H5'1 116.5 120.0
H5'2 C5' C4' O4' 194.6 181.7
H5'2 C5' C4' C3' 317.0 299.7
H5'2 C5' C4' H4' 75.5 60.7
O4' C4' C5' H5'1 304.1 301.8
O4' C4' C5' H5'2 194.6 181.7
C5' C4' O4' C3' 125.6 119.6
C5' C4' O4' H4' 244.6 239.0
C3' C4' O4' H4' 119.0 119.4
O4' C4' C3' O3' 251.3 239.3
O4' C4' C3' C2' 7.9 358.1
O4' C4' C3' H3' 130.6 116.7
C4' O4' C1' C2' 346.4 320.0
C4' O4' C1' N9 224.3 201.2
C4' O4' C1' H1' 105.9 78.5
C3' C4' C5' H5'1 66.4 59.8
C3' C4' C5' H5'2 317.0 299.7
C5' C4' C3' O4' 234.8 240.5
C5' C4' C3' H4' 115.3 121.0
O4' C4' C3' H4' 240.5 240.5
C3' C4' O4' C1' 3.6 26.4
O3' C3' C4' C2' 243.4 241.2
O3' C3' C4' H3' 120.8 122.7
C4' C3' O3' HO3' 180.0 176.2
C2' C3' C4' H3' 237.3 241.5
C4' C3' C2' O2' 221.6 220.8
C4' C3' C2' C1' 344.4 339.0
C4' C3' C2' H2' 104.5 97.1
H4' C4' C5' H5'1 185.0 180.7
H4' C4' C5' H5'2 75.5 60.7
C5' C4' H4' O4' 120.8 121.1
C5' C4' H4' C3' 238.7 239.0
O4' C4' H4' C3' 117.9 117.9
H4' C4' O4' C1' 244.6 267.0
H4' C4' C3' O3' 10.8 358.8
H4' C4' C3' C2' 127.4 117.6
H4' C4' C3' H3' 250.1 236.1
C1' O4' C4' C3' 3.6 26.4
C1' O4' C4' H4' 244.6 267.0
C3' C2' C1' O4' 18.2 37.1
O2' C2' C1' O4' 139.4 155.3
O4' C1' C2' H2' 256.5 278.9
C2' C1' O4' N9 122.2 118.7
C2' C1' O4' H1' 240.5 241.5
N9 C1' O4' H1' 118.4 122.8
O4' C1' N9 C8 120.0 28.6
O4' C1' N9 C4 288.0 208.3
O3' C3' C4' H4' 10.8 358.8
C4' C3' O3' C2' 114.9 114.8
C4' C3' O3' H3' 237.7 237.4
C2' C3' O3' H3' 122.8 122.5
O3' C3' C2' O2' 339.0 339.8
O3' C3' C2' C1' 101.7 98.0
O3' C3' C2' H2' 221.8 216.1
C2' C3' C4' H4' 127.4 117.6
C4' C3' C2' O3' 242.6 241.0
C4' C3' C2' H3' 122.0 118.4
O4' C1' C2' C3' 18.2 37.1
O3' C3' C2' H3' 239.4 237.5
C2' C3' O3' HO3' 65.0 61.4
O2' C2' C3' C1' 237.3 241.8
O2' C2' C3' H2' 117.2 123.7
C3' C2' O2' HO2' 180.0 292.6
C1' C2' C3' H2' 239.9 241.9
C3' C2' C1' N9 138.0 155.8
C3' C2' C1' H1' 256.3 278.6
H3' C3' C4' H4' 250.1 236.1
C4' C3' H3' O3' 121.1 122.9
C4' C3' H3' C2' 241.3 245.5
O3' C3' H3' C2' 120.3 122.6
H3' C3' O3' HO3' 302.2 298.8
H3' C3' C2' O2' 99.6 102.4
H3' C3' C2' C1' 222.4 220.5
H3' C3' C2' H2' 342.5 338.7
HO3' O3' C3' C2' 65.0 61.4
HO3' O3' C3' H3' 302.2 298.8
O4' C1' C2' O2' 139.4 155.3
O2' C2' C3' H3' 99.6 102.4
C3' C2' O2' C1' 118.5 112.6
C3' C2' O2' H2' 238.4 236.3
C1' C2' O2' H2' 119.9 123.6
O2' C2' C1' N9 259.2 273.9
O2' C2' C1' H1' 17.5 36.7
O4' C1' C2' N9 240.2 241.4
O4' C1' C2' H1' 121.8 118.5
C1' C2' C3' H3' 222.4 220.5
C3' C2' C1' O2' 238.8 241.9
C3' C2' C1' H2' 121.7 118.2
O2' C2' C1' H2' 242.9 236.3
C1' C2' O2' HO2' 61.5 180.0
N9 C1' C2' H1' 241.7 237.1
C2' C1' N9 C8 1.2 274.3
C2' C1' N9 C4 169.2 94.1
H2' C2' C3' H3' 342.5 338.7
C3' C2' H2' O2' 120.4 123.7
C3' C2' H2' C1' 242.3 247.3
O2' C2' H2' C1' 121.9 123.7
H2' C2' O2' HO2' 301.6 56.3
H2' C2' C1' N9 16.3 37.5
H2' C2' C1' H1' 134.7 160.4
HO2' O2' C2' C1' 61.5 180.0
HO2' O2' C2' H2' 301.6 56.3
O4' C1' N9 C2' 118.8 114.2
O4' C1' N9 H1' 238.2 237.2
N9 C1' C2' H2' 16.3 37.5
C2' C1' N9 H1' 119.4 122.9
C8 N9 C1' C4 192.0 180.3
C1' N9 C8 N7 171.7 180.0
C1' N9 C8 H8 351.8 359.9
C1' N9 C4 C5 190.2 179.9
C1' N9 C4 N3 3.5 0.8
O4' C1' H1' C2' 241.4 245.9
O4' C1' H1' N9 119.6 122.8
H1' C1' C2' H2' 134.7 160.4
C2' C1' H1' N9 238.1 237.0
H1' C1' N9 C8 241.8 151.4
H1' C1' N9 C4 49.8 331.1
C8 N9 C1' H1' 241.8 151.4
C1' N9 C8 C4 169.8 179.8
C8 N9 C4 C5 0.7 359.6
C8 N9 C4 N3 174.0 180.5
N7 C8 N9 H8 179.9 180.1
N9 C8 N7 C5 356.5 359.9
C4 N9 C1' H1' 49.8 331.1
C1' N9 C4 C8 189.5 180.2
C4 N9 C8 N7 1.9 0.3
C4 N9 C8 H8 182.0 180.2
N7 C5 C4 N9 357.1 0.3
C6 C5 C4 N9 184.8 180.2
C5 C4 N9 N3 186.7 179.1
C2 N3 C4 N9 190.2 179.6
N7 C8 N9 C4 1.9 0.3
N9 C8 N7 H8 180.1 179.9
C8 N7 C5 C6 174.5 180.0
C8 N7 C5 C4 3.8 359.8
H8 C8 N9 C4 182.0 180.2
N9 C8 H8 N7 179.9 180.1
H8 C8 N7 C5 176.4 180.0
N9 C4 C5 N7 357.1 0.3
C5 N7 C8 H8 176.4 180.0
C6 C5 N7 C4 170.6 180.2
N7 C5 C6 N6 2.0 0.1
N7 C5 C6 N1 171.7 180.0
N7 C5 C4 N3 183.9 179.6
N9 C4 C5 C6 184.8 180.2
N7 C5 C6 C4 189.8 179.8
C6 C5 C4 N3 11.7 359.5
N6 C6 C5 N1 190.3 180.1
C5 C6 N6 HN61 180.0 180.0
C5 C6 N6 HN62 54.8 360.0
C5 C6 N1 C2 11.1 0.1
N9 C4 C5 N3 173.2 180.7
N7 C5 C4 C6 172.3 180.1
C4 C5 C6 N6 172.1 180.3
C4 C5 C6 N1 341.8 0.2
C2 N3 C4 C5 2.3 0.5
N6 C6 C5 C4 172.1 180.3
C5 C6 N6 N1 169.6 179.9
N6 C6 N1 C2 181.4 180.0
HN61 N6 C6 HN62 125.2 180.0
N1 C6 C5 C4 341.8 0.2
C5 C6 N1 N6 189.7 180.1
N1 C6 N6 HN61 10.4 0.1
N1 C6 N6 HN62 245.2 180.1
C6 N1 C2 N3 4.3 359.9
C6 N1 C2 H2 184.4 179.9
HN61 N6 C6 N1 10.4 0.1
C6 N6 HN61 HN62 234.8 180.0
HN62 N6 C6 N1 245.2 180.1
C6 N6 HN62 HN61 134.8 180.0
N3 C2 N1 H2 180.0 179.9
N1 C2 N3 C4 348.9 359.8
N9 C4 N3 C2 190.2 179.6
C5 C4 N3 C2 2.3 0.5
N1 C2 N3 H2 180.0 180.1
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C4 168.9 179.7
N9 C4 N3 C5 188.0 179.0
C4 N3 C2 H2 168.9 179.7