PDB Chemical Component AB3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AB3
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C20 |
C14 |
1.529 |
1.530 |
C20 |
H201 |
1.115 |
1.089 |
C20 |
H202 |
1.115 |
1.090 |
C20 |
H203 |
1.114 |
1.091 |
C14 |
C19 |
1.548 |
1.531 |
C14 |
C21 |
1.560 |
1.530 |
C14 |
N11 |
1.475 |
1.465 |
C19 |
H191 |
1.115 |
1.090 |
C19 |
H192 |
1.114 |
1.090 |
C19 |
H193 |
1.116 |
1.090 |
C21 |
H211 |
1.115 |
1.090 |
C21 |
H212 |
1.115 |
1.090 |
C21 |
H213 |
1.114 |
1.090 |
N11 |
N15 |
1.286 |
1.399 |
N11 |
C7 |
1.346 |
1.363 |
N15 |
C13 |
1.334 |
1.312 |
C7 |
N3 |
1.356 |
1.333 |
C7 |
C4 |
1.403 |
1.408 |
N3 |
C6 |
1.328 |
1.314 |
C6 |
N5 |
1.352 |
1.322 |
C6 |
H6 |
1.103 |
1.080 |
N5 |
C2 |
1.339 |
1.329 |
C2 |
N1 |
1.348 |
1.381 |
C2 |
C4 |
1.404 |
1.405 |
N1 |
HN11 |
1.019 |
0.969 |
N1 |
HN12 |
1.020 |
0.971 |
C4 |
C13 |
1.414 |
1.463 |
C13 |
C18 |
1.414 |
1.483 |
C18 |
C28 |
1.396 |
1.393 |
C18 |
C27 |
1.416 |
1.395 |
C28 |
C29 |
1.394 |
1.385 |
C28 |
H28 |
1.104 |
1.080 |
C27 |
C30 |
1.404 |
1.380 |
C27 |
H27 |
1.103 |
1.080 |
C30 |
C26 |
1.393 |
1.383 |
C30 |
H30 |
1.102 |
1.080 |
C26 |
C29 |
1.380 |
1.388 |
C26 |
H26 |
1.103 |
1.080 |
C29 |
O33 |
1.348 |
1.359 |
O33 |
H33 |
0.950 |
0.967 |
Bond Angles for AB3
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C14 |
C20 |
H201 |
112.1 |
109.5 |
C14 |
C20 |
H202 |
111.2 |
109.4 |
C14 |
C20 |
H203 |
111.2 |
109.4 |
C20 |
C14 |
C19 |
112.1 |
109.4 |
C20 |
C14 |
C21 |
109.7 |
109.5 |
C20 |
C14 |
N11 |
106.6 |
109.5 |
H201 |
C20 |
H202 |
111.2 |
109.5 |
H201 |
C20 |
H203 |
111.3 |
109.5 |
H202 |
C20 |
H203 |
99.2 |
109.5 |
C19 |
C14 |
C21 |
109.1 |
109.4 |
C19 |
C14 |
N11 |
108.0 |
109.4 |
C14 |
C19 |
H191 |
112.1 |
109.5 |
C14 |
C19 |
H192 |
111.3 |
109.5 |
C14 |
C19 |
H193 |
111.2 |
109.4 |
C21 |
C14 |
N11 |
111.4 |
109.5 |
C14 |
C21 |
H211 |
109.6 |
109.4 |
C14 |
C21 |
H212 |
112.1 |
109.5 |
C14 |
C21 |
H213 |
112.1 |
109.5 |
C14 |
N11 |
N15 |
125.6 |
125.3 |
C14 |
N11 |
C7 |
123.9 |
125.3 |
H191 |
C19 |
H192 |
111.3 |
109.5 |
H191 |
C19 |
H193 |
111.2 |
109.5 |
H192 |
C19 |
H193 |
99.2 |
109.5 |
H211 |
C21 |
H212 |
112.1 |
109.5 |
H211 |
C21 |
H213 |
112.2 |
109.5 |
H212 |
C21 |
H213 |
98.3 |
109.5 |
N15 |
N11 |
C7 |
110.3 |
109.4 |
N11 |
N15 |
C13 |
111.1 |
109.9 |
N11 |
C7 |
N3 |
129.8 |
134.5 |
N11 |
C7 |
C4 |
106.9 |
106.9 |
N15 |
C13 |
C4 |
106.7 |
107.4 |
N15 |
C13 |
C18 |
122.3 |
126.3 |
N3 |
C7 |
C4 |
123.2 |
118.6 |
C7 |
N3 |
C6 |
116.3 |
120.7 |
C7 |
C4 |
C2 |
116.3 |
118.5 |
C7 |
C4 |
C13 |
104.9 |
106.4 |
N3 |
C6 |
N5 |
124.3 |
122.7 |
N3 |
C6 |
H6 |
116.9 |
118.7 |
N5 |
C6 |
H6 |
118.8 |
118.6 |
C6 |
N5 |
C2 |
120.0 |
121.1 |
N5 |
C2 |
N1 |
116.4 |
120.9 |
N5 |
C2 |
C4 |
119.8 |
118.4 |
N1 |
C2 |
C4 |
123.7 |
120.8 |
C2 |
N1 |
HN11 |
116.4 |
120.1 |
C2 |
N1 |
HN12 |
109.7 |
120.0 |
C2 |
C4 |
C13 |
138.7 |
135.0 |
HN11 |
N1 |
HN12 |
109.7 |
120.0 |
C4 |
C13 |
C18 |
131.0 |
126.3 |
C13 |
C18 |
C28 |
120.4 |
120.1 |
C13 |
C18 |
C27 |
121.5 |
120.1 |
C28 |
C18 |
C27 |
118.1 |
119.8 |
C18 |
C28 |
C29 |
123.2 |
119.8 |
C18 |
C28 |
H28 |
118.5 |
120.1 |
C18 |
C27 |
C30 |
119.0 |
120.0 |
C18 |
C27 |
H27 |
120.8 |
120.0 |
C29 |
C28 |
H28 |
118.3 |
120.1 |
C28 |
C29 |
C26 |
117.7 |
120.0 |
C28 |
C29 |
O33 |
119.8 |
120.0 |
C30 |
C27 |
H27 |
120.2 |
120.0 |
C27 |
C30 |
C26 |
120.6 |
120.2 |
C27 |
C30 |
H30 |
120.1 |
119.9 |
C26 |
C30 |
H30 |
119.3 |
119.9 |
C30 |
C26 |
C29 |
121.4 |
120.2 |
C30 |
C26 |
H26 |
119.8 |
119.9 |
C29 |
C26 |
H26 |
118.8 |
119.9 |
C26 |
C29 |
O33 |
122.5 |
120.0 |
C29 |
O33 |
H33 |
119.8 |
106.8 |
Torsion Angles for AB3
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H201 |
C20 |
C14 |
H202 |
234.8 |
240.0 |
H201 |
C20 |
C14 |
H203 |
125.3 |
120.0 |
H202 |
C20 |
C14 |
H203 |
250.5 |
240.0 |
C19 |
C14 |
C20 |
C21 |
121.4 |
240.0 |
C19 |
C14 |
C20 |
N11 |
242.0 |
119.9 |
C20 |
C14 |
C19 |
H191 |
180.0 |
60.0 |
C20 |
C14 |
C19 |
H192 |
305.3 |
180.0 |
C20 |
C14 |
C19 |
H193 |
54.8 |
300.0 |
C21 |
C14 |
C20 |
N11 |
120.7 |
239.9 |
C20 |
C14 |
C21 |
H211 |
180.0 |
60.0 |
C20 |
C14 |
C21 |
H212 |
305.3 |
180.0 |
C20 |
C14 |
C21 |
H213 |
54.7 |
300.0 |
C20 |
C14 |
N11 |
N15 |
346.8 |
359.9 |
C20 |
C14 |
N11 |
C7 |
171.7 |
179.7 |
C14 |
C20 |
H201 |
H202 |
125.2 |
120.0 |
C14 |
C20 |
H201 |
H203 |
234.7 |
240.0 |
H201 |
C20 |
C14 |
C19 |
180.0 |
60.0 |
H201 |
C20 |
C14 |
C21 |
58.6 |
179.9 |
H201 |
C20 |
C14 |
N11 |
298.0 |
300.0 |
H202 |
C20 |
H201 |
H203 |
109.5 |
120.0 |
C14 |
C20 |
H202 |
H201 |
234.3 |
240.0 |
C14 |
C20 |
H202 |
H203 |
117.1 |
119.9 |
H202 |
C20 |
C14 |
C19 |
305.2 |
180.0 |
H202 |
C20 |
C14 |
C21 |
183.9 |
300.0 |
H202 |
C20 |
C14 |
N11 |
63.2 |
60.1 |
H201 |
C20 |
H202 |
H203 |
242.8 |
240.0 |
C14 |
C20 |
H203 |
H201 |
125.8 |
120.0 |
C14 |
C20 |
H203 |
H202 |
242.9 |
240.1 |
H203 |
C20 |
C14 |
C19 |
54.7 |
300.0 |
H203 |
C20 |
C14 |
C21 |
293.3 |
59.9 |
H203 |
C20 |
C14 |
N11 |
172.7 |
180.0 |
H201 |
C20 |
H203 |
H202 |
117.2 |
120.0 |
C19 |
C14 |
C20 |
H201 |
180.0 |
60.0 |
C19 |
C14 |
C20 |
H202 |
305.2 |
180.0 |
C19 |
C14 |
C20 |
H203 |
54.7 |
300.0 |
C20 |
C14 |
C19 |
C21 |
238.3 |
120.0 |
C20 |
C14 |
C19 |
N11 |
117.1 |
240.0 |
C21 |
C14 |
C19 |
N11 |
238.8 |
120.0 |
C19 |
C14 |
C21 |
H211 |
56.9 |
180.0 |
C19 |
C14 |
C21 |
H212 |
182.1 |
300.0 |
C19 |
C14 |
C21 |
H213 |
291.6 |
60.0 |
C19 |
C14 |
N11 |
N15 |
107.5 |
240.0 |
C19 |
C14 |
N11 |
C7 |
292.3 |
59.8 |
H191 |
C19 |
C14 |
H192 |
234.7 |
240.0 |
H191 |
C19 |
C14 |
H193 |
125.2 |
120.0 |
H192 |
C19 |
C14 |
H193 |
250.5 |
240.0 |
C21 |
C14 |
C20 |
H201 |
58.6 |
179.9 |
C21 |
C14 |
C20 |
H202 |
183.9 |
300.0 |
C21 |
C14 |
C20 |
H203 |
293.3 |
59.9 |
C20 |
C14 |
C21 |
C19 |
123.2 |
240.0 |
C20 |
C14 |
C21 |
N11 |
242.3 |
120.1 |
C19 |
C14 |
C21 |
N11 |
119.1 |
240.0 |
C21 |
C14 |
C19 |
H191 |
301.7 |
300.0 |
C21 |
C14 |
C19 |
H192 |
67.0 |
60.0 |
C21 |
C14 |
C19 |
H193 |
176.5 |
180.0 |
C21 |
C14 |
N11 |
N15 |
227.2 |
120.0 |
C21 |
C14 |
N11 |
C7 |
52.1 |
299.8 |
H211 |
C21 |
C14 |
H212 |
234.8 |
240.0 |
H211 |
C21 |
C14 |
H213 |
125.3 |
120.0 |
H212 |
C21 |
C14 |
H213 |
250.5 |
240.0 |
N11 |
C14 |
C20 |
H201 |
298.0 |
300.0 |
N11 |
C14 |
C20 |
H202 |
63.2 |
60.1 |
N11 |
C14 |
C20 |
H203 |
172.7 |
180.0 |
C20 |
C14 |
N11 |
C19 |
239.3 |
119.9 |
C20 |
C14 |
N11 |
C21 |
119.6 |
239.9 |
C19 |
C14 |
N11 |
C21 |
240.2 |
120.0 |
N11 |
C14 |
C19 |
H191 |
62.8 |
180.0 |
N11 |
C14 |
C19 |
H192 |
188.2 |
300.0 |
N11 |
C14 |
C19 |
H193 |
297.7 |
60.0 |
N11 |
C14 |
C21 |
H211 |
297.7 |
300.0 |
N11 |
C14 |
C21 |
H212 |
63.0 |
59.9 |
N11 |
C14 |
C21 |
H213 |
172.4 |
180.0 |
N15 |
N11 |
C14 |
C7 |
175.1 |
180.2 |
C14 |
N11 |
N15 |
C13 |
184.7 |
180.0 |
C14 |
N11 |
C7 |
N3 |
354.3 |
0.7 |
C14 |
N11 |
C7 |
C4 |
176.1 |
179.8 |
H191 |
C19 |
C14 |
C21 |
301.7 |
300.0 |
H191 |
C19 |
C14 |
N11 |
62.8 |
180.0 |
C14 |
C19 |
H191 |
H192 |
125.3 |
120.0 |
C14 |
C19 |
H191 |
H193 |
234.8 |
240.0 |
H192 |
C19 |
H191 |
H193 |
109.5 |
120.0 |
H192 |
C19 |
C14 |
C21 |
67.0 |
60.0 |
H192 |
C19 |
C14 |
N11 |
188.2 |
300.0 |
C14 |
C19 |
H192 |
H191 |
234.2 |
240.0 |
C14 |
C19 |
H192 |
H193 |
117.1 |
120.0 |
H191 |
C19 |
H192 |
H193 |
242.9 |
240.0 |
H193 |
C19 |
C14 |
C21 |
176.5 |
180.0 |
H193 |
C19 |
C14 |
N11 |
297.7 |
60.0 |
C14 |
C19 |
H193 |
H191 |
125.7 |
120.0 |
C14 |
C19 |
H193 |
H192 |
242.8 |
240.0 |
H191 |
C19 |
H193 |
H192 |
117.2 |
120.0 |
H211 |
C21 |
C14 |
N11 |
297.7 |
300.0 |
C14 |
C21 |
H211 |
H212 |
125.2 |
120.0 |
C14 |
C21 |
H211 |
H213 |
234.7 |
240.0 |
H212 |
C21 |
H211 |
H213 |
109.5 |
120.0 |
H212 |
C21 |
C14 |
N11 |
63.0 |
59.9 |
C14 |
C21 |
H212 |
H211 |
236.2 |
240.1 |
C14 |
C21 |
H212 |
H213 |
118.1 |
120.1 |
H211 |
C21 |
H212 |
H213 |
241.9 |
240.0 |
H213 |
C21 |
C14 |
N11 |
172.4 |
180.0 |
C14 |
C21 |
H213 |
H211 |
123.9 |
120.0 |
C14 |
C21 |
H213 |
H212 |
241.9 |
240.0 |
H211 |
C21 |
H213 |
H212 |
118.0 |
120.0 |
C14 |
N11 |
N15 |
C7 |
184.3 |
179.8 |
N15 |
N11 |
C7 |
N3 |
178.5 |
180.5 |
N15 |
N11 |
C7 |
C4 |
0.4 |
359.6 |
N11 |
N15 |
C13 |
C4 |
359.0 |
0.0 |
N11 |
N15 |
C13 |
C18 |
178.5 |
180.0 |
C14 |
N11 |
C7 |
N15 |
175.8 |
180.2 |
C7 |
N11 |
N15 |
C13 |
0.4 |
0.2 |
N3 |
C7 |
N11 |
C4 |
178.2 |
180.9 |
N11 |
C7 |
N3 |
C6 |
182.5 |
179.5 |
N11 |
C7 |
C4 |
C2 |
177.9 |
180.2 |
N11 |
C7 |
C4 |
C13 |
359.0 |
0.4 |
C13 |
N15 |
N11 |
C7 |
0.4 |
0.2 |
C7 |
C4 |
C13 |
N15 |
1.2 |
359.7 |
C2 |
C4 |
C13 |
N15 |
182.8 |
180.0 |
C4 |
C13 |
N15 |
C18 |
180.5 |
180.0 |
N15 |
C13 |
C18 |
C28 |
226.0 |
44.5 |
N15 |
C13 |
C18 |
C27 |
46.8 |
224.8 |
N11 |
C7 |
N3 |
C4 |
182.1 |
179.0 |
N3 |
C7 |
C4 |
C2 |
359.6 |
359.4 |
N3 |
C7 |
C4 |
C13 |
180.7 |
179.7 |
C7 |
N3 |
C6 |
N5 |
0.2 |
359.8 |
C7 |
N3 |
C6 |
H6 |
180.2 |
179.7 |
N11 |
C7 |
C4 |
N3 |
178.3 |
180.7 |
N15 |
C13 |
C4 |
C7 |
1.2 |
359.7 |
C4 |
C7 |
N3 |
C6 |
0.4 |
0.5 |
N5 |
C2 |
C4 |
C7 |
359.9 |
0.3 |
N1 |
C2 |
C4 |
C7 |
184.1 |
180.3 |
C2 |
C4 |
C7 |
C13 |
178.8 |
179.8 |
C7 |
C4 |
C13 |
C18 |
181.7 |
179.7 |
C6 |
N3 |
C7 |
C4 |
0.4 |
0.5 |
N5 |
C6 |
N3 |
H6 |
180.0 |
180.0 |
N3 |
C6 |
N5 |
C2 |
359.3 |
359.9 |
N3 |
C6 |
N5 |
H6 |
180.0 |
180.0 |
C6 |
N5 |
C2 |
N1 |
176.8 |
180.0 |
C6 |
N5 |
C2 |
C4 |
0.6 |
360.0 |
N3 |
C6 |
H6 |
N5 |
180.0 |
180.0 |
H6 |
C6 |
N5 |
C2 |
179.3 |
180.0 |
C7 |
C4 |
C2 |
N5 |
359.9 |
0.3 |
C2 |
N5 |
C6 |
H6 |
179.3 |
180.0 |
N1 |
C2 |
N5 |
C4 |
176.2 |
180.0 |
N5 |
C2 |
N1 |
HN11 |
180.0 |
196.2 |
N5 |
C2 |
N1 |
HN12 |
54.7 |
16.2 |
N5 |
C2 |
C4 |
C13 |
178.2 |
180.0 |
C7 |
C4 |
C2 |
N1 |
184.1 |
180.3 |
N5 |
C2 |
N1 |
C4 |
184.0 |
180.0 |
N1 |
C2 |
C4 |
C13 |
2.3 |
360.0 |
HN11 |
N1 |
C2 |
HN12 |
125.3 |
180.0 |
N15 |
C13 |
C4 |
C2 |
182.8 |
180.0 |
C7 |
C4 |
C2 |
C13 |
181.7 |
180.3 |
N5 |
C2 |
C4 |
N1 |
175.9 |
180.0 |
C4 |
C2 |
N1 |
HN11 |
356.0 |
16.2 |
C4 |
C2 |
N1 |
HN12 |
230.7 |
196.2 |
C2 |
C4 |
C13 |
C18 |
3.3 |
0.0 |
HN11 |
N1 |
C2 |
C4 |
356.0 |
16.2 |
C2 |
N1 |
HN11 |
HN12 |
234.7 |
180.0 |
HN12 |
N1 |
C2 |
C4 |
230.7 |
196.2 |
C2 |
N1 |
HN12 |
HN11 |
129.0 |
180.0 |
N15 |
C13 |
C4 |
C18 |
179.4 |
180.0 |
C7 |
C4 |
C13 |
C2 |
178.4 |
179.7 |
C4 |
C13 |
C18 |
C28 |
45.4 |
224.5 |
C4 |
C13 |
C18 |
C27 |
226.2 |
44.8 |
N15 |
C13 |
C18 |
C4 |
180.6 |
180.0 |
C28 |
C18 |
C13 |
C27 |
179.2 |
179.8 |
C13 |
C18 |
C28 |
C29 |
181.1 |
179.7 |
C13 |
C18 |
C28 |
H28 |
1.0 |
0.2 |
C13 |
C18 |
C27 |
C30 |
178.9 |
180.0 |
C13 |
C18 |
C27 |
H27 |
358.9 |
359.9 |
C13 |
C18 |
C28 |
C27 |
180.8 |
180.2 |
C28 |
C18 |
C27 |
C30 |
359.7 |
0.3 |
C28 |
C18 |
C27 |
H27 |
179.7 |
180.2 |
C29 |
C28 |
C18 |
H28 |
180.0 |
179.5 |
C18 |
C28 |
C29 |
C26 |
0.3 |
0.6 |
C18 |
C28 |
C29 |
O33 |
179.6 |
180.3 |
C13 |
C18 |
C27 |
C28 |
179.2 |
179.8 |
C27 |
C18 |
C28 |
C29 |
0.3 |
359.5 |
C27 |
C18 |
C28 |
H28 |
180.2 |
180.0 |
C30 |
C27 |
C18 |
H27 |
180.0 |
180.1 |
C18 |
C27 |
C30 |
C26 |
359.8 |
359.9 |
C18 |
C27 |
C30 |
H30 |
179.8 |
180.0 |
C29 |
C28 |
C18 |
C27 |
0.3 |
359.5 |
C18 |
C28 |
C29 |
H28 |
180.0 |
180.5 |
C30 |
C26 |
C29 |
C28 |
359.1 |
359.6 |
C28 |
C29 |
C26 |
H26 |
179.1 |
179.7 |
C26 |
C29 |
C28 |
O33 |
180.7 |
180.3 |
C28 |
C29 |
O33 |
H33 |
180.1 |
270.3 |
H28 |
C28 |
C18 |
C27 |
180.2 |
180.0 |
C18 |
C28 |
H28 |
C29 |
180.0 |
179.5 |
H28 |
C28 |
C29 |
C26 |
180.4 |
180.1 |
H28 |
C28 |
C29 |
O33 |
359.6 |
359.8 |
C18 |
C27 |
C30 |
H27 |
180.0 |
179.9 |
C26 |
C30 |
C27 |
H30 |
179.9 |
179.9 |
C27 |
C30 |
C26 |
C29 |
0.8 |
0.1 |
C27 |
C30 |
C26 |
H26 |
180.8 |
180.0 |
C18 |
C27 |
H27 |
C30 |
180.0 |
180.1 |
H27 |
C27 |
C30 |
C26 |
179.8 |
180.0 |
H27 |
C27 |
C30 |
H30 |
359.8 |
0.1 |
C28 |
C29 |
C26 |
C30 |
359.1 |
359.6 |
C26 |
C30 |
C27 |
H27 |
179.8 |
180.0 |
C27 |
C30 |
C26 |
H30 |
180.0 |
180.1 |
C29 |
C26 |
C30 |
H26 |
180.0 |
180.1 |
C30 |
C26 |
C29 |
O33 |
179.9 |
179.9 |
H30 |
C30 |
C27 |
H27 |
359.8 |
0.1 |
C27 |
C30 |
H30 |
C26 |
180.0 |
179.9 |
H30 |
C30 |
C26 |
C29 |
180.8 |
180.0 |
H30 |
C30 |
C26 |
H26 |
0.8 |
360.0 |
C26 |
C29 |
C28 |
H28 |
180.4 |
180.1 |
C28 |
C29 |
C26 |
O33 |
179.2 |
179.7 |
C29 |
C26 |
C30 |
H30 |
180.8 |
180.0 |
C30 |
C26 |
C29 |
H26 |
180.0 |
179.9 |
C26 |
C29 |
O33 |
H33 |
359.3 |
90.0 |
H26 |
C26 |
C30 |
H30 |
0.8 |
360.0 |
C30 |
C26 |
H26 |
C29 |
180.0 |
180.1 |
H26 |
C26 |
C29 |
O33 |
359.9 |
0.0 |
O33 |
C29 |
C28 |
H28 |
359.6 |
359.8 |
C28 |
C29 |
O33 |
C26 |
180.8 |
180.3 |
O33 |
C29 |
C26 |
H26 |
359.9 |
0.0 |