PDB Chemical Component AAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AAR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.496 |
1.469 |
| N |
H |
0.978 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
CB |
1.537 |
1.530 |
| CA |
C |
1.538 |
1.507 |
| CA |
HA |
1.081 |
1.091 |
| CB |
CG |
1.533 |
1.531 |
| CB |
HB2 |
1.079 |
1.089 |
| CB |
HB3 |
1.081 |
1.090 |
| CG |
CD |
1.531 |
1.529 |
| CG |
HG2 |
1.080 |
1.089 |
| CG |
HG3 |
1.080 |
1.090 |
| CD |
NE |
1.493 |
1.465 |
| CD |
HD2 |
1.080 |
1.090 |
| CD |
HD3 |
1.081 |
1.090 |
| NE |
CZ |
1.304 |
1.368 |
| NE |
HE |
0.981 |
0.970 |
| CZ |
NH1 |
1.303 |
1.333 |
| CZ |
NH2 |
1.303 |
1.332 |
| NH1 |
HH11 |
1.000 |
0.970 |
| NH1 |
HH12 |
0.999 |
0.970 |
| NH2 |
HH21 |
1.000 |
0.970 |
| NH2 |
HH22 |
0.999 |
0.970 |
| C |
O |
1.217 |
1.213 |
| C |
NT |
1.305 |
1.347 |
| NT |
HNT1 |
0.988 |
0.970 |
| NT |
HNT2 |
0.988 |
0.970 |
Bond Angles for AAR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
119.6 |
106.7 |
| CA |
N |
H2 |
112.3 |
106.8 |
| N |
CA |
CB |
109.3 |
109.5 |
| N |
CA |
C |
109.4 |
109.5 |
| N |
CA |
HA |
109.2 |
109.5 |
| H |
N |
H2 |
96.3 |
106.7 |
| CB |
CA |
C |
110.5 |
109.5 |
| CB |
CA |
HA |
109.4 |
109.5 |
| CA |
CB |
CG |
109.6 |
109.5 |
| CA |
CB |
HB2 |
109.6 |
109.4 |
| CA |
CB |
HB3 |
109.4 |
109.4 |
| C |
CA |
HA |
109.1 |
109.5 |
| CA |
C |
O |
121.2 |
120.0 |
| CA |
C |
NT |
119.2 |
120.0 |
| CG |
CB |
HB2 |
109.4 |
109.5 |
| CG |
CB |
HB3 |
109.5 |
109.4 |
| CB |
CG |
CD |
109.7 |
109.5 |
| CB |
CG |
HG2 |
109.4 |
109.5 |
| CB |
CG |
HG3 |
109.5 |
109.4 |
| HB2 |
CB |
HB3 |
109.4 |
109.5 |
| CD |
CG |
HG2 |
109.3 |
109.5 |
| CD |
CG |
HG3 |
109.5 |
109.5 |
| CG |
CD |
NE |
109.5 |
109.4 |
| CG |
CD |
HD2 |
109.5 |
109.4 |
| CG |
CD |
HD3 |
109.4 |
109.5 |
| HG2 |
CG |
HG3 |
109.4 |
109.5 |
| NE |
CD |
HD2 |
109.5 |
109.4 |
| NE |
CD |
HD3 |
109.5 |
109.5 |
| CD |
NE |
CZ |
120.2 |
120.0 |
| CD |
NE |
HE |
119.9 |
120.0 |
| HD2 |
CD |
HD3 |
109.4 |
109.5 |
| CZ |
NE |
HE |
119.9 |
120.0 |
| NE |
CZ |
NH1 |
120.0 |
120.0 |
| NE |
CZ |
NH2 |
119.8 |
120.0 |
| NH1 |
CZ |
NH2 |
120.2 |
119.9 |
| CZ |
NH1 |
HH11 |
119.9 |
120.0 |
| CZ |
NH1 |
HH12 |
120.1 |
120.0 |
| CZ |
NH2 |
HH21 |
119.9 |
120.0 |
| CZ |
NH2 |
HH22 |
120.2 |
119.9 |
| HH11 |
NH1 |
HH12 |
120.0 |
120.0 |
| HH21 |
NH2 |
HH22 |
119.9 |
120.1 |
| O |
C |
NT |
119.5 |
120.0 |
| C |
NT |
HNT1 |
119.9 |
120.0 |
| C |
NT |
HNT2 |
119.7 |
120.0 |
| HNT1 |
NT |
HNT2 |
120.3 |
120.0 |
Torsion Angles for AAR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
248.4 |
246.2 |
| CB |
CA |
N |
C |
238.9 |
240.0 |
| CB |
CA |
N |
HA |
119.5 |
120.0 |
| N |
CA |
CB |
CG |
220.0 |
295.0 |
| N |
CA |
CB |
HB2 |
99.9 |
55.0 |
| N |
CA |
CB |
HB3 |
339.9 |
175.1 |
| C |
CA |
N |
HA |
240.6 |
240.0 |
| N |
CA |
C |
O |
242.1 |
340.0 |
| N |
CA |
C |
NT |
62.2 |
160.0 |
| CA |
N |
H |
H2 |
120.1 |
113.8 |
| H |
N |
CA |
CB |
303.1 |
299.9 |
| H |
N |
CA |
C |
64.2 |
59.9 |
| H |
N |
CA |
HA |
183.6 |
180.0 |
| CA |
N |
H2 |
H |
234.4 |
246.2 |
| H2 |
N |
CA |
CB |
54.7 |
53.7 |
| H2 |
N |
CA |
C |
175.8 |
173.7 |
| H2 |
N |
CA |
HA |
295.2 |
293.8 |
| CB |
CA |
N |
H |
303.1 |
299.9 |
| CB |
CA |
N |
H2 |
54.7 |
53.7 |
| N |
CA |
CB |
C |
120.4 |
120.0 |
| N |
CA |
CB |
HA |
240.6 |
240.0 |
| C |
CA |
CB |
HA |
120.2 |
120.0 |
| CB |
CA |
C |
O |
2.4 |
100.1 |
| CB |
CA |
C |
NT |
182.5 |
280.0 |
| CG |
CB |
CA |
HB2 |
120.1 |
240.0 |
| CG |
CB |
CA |
HB3 |
240.0 |
120.0 |
| CA |
CB |
CG |
CD |
245.6 |
180.0 |
| CA |
CB |
CG |
HG2 |
125.7 |
300.0 |
| CA |
CB |
CG |
HG3 |
5.8 |
60.0 |
| HB2 |
CB |
CA |
HB3 |
119.9 |
239.9 |
| C |
CA |
N |
H |
64.2 |
59.9 |
| C |
CA |
N |
H2 |
175.8 |
173.7 |
| N |
CA |
C |
CB |
239.7 |
240.0 |
| N |
CA |
C |
HA |
119.4 |
120.0 |
| CB |
CA |
C |
HA |
239.7 |
240.0 |
| C |
CA |
CB |
CG |
99.6 |
175.0 |
| C |
CA |
CB |
HB2 |
339.5 |
295.0 |
| C |
CA |
CB |
HB3 |
219.6 |
55.0 |
| O |
C |
CA |
NT |
179.8 |
180.1 |
| CA |
C |
NT |
HNT1 |
359.8 |
0.1 |
| CA |
C |
NT |
HNT2 |
179.9 |
180.0 |
| HA |
CA |
N |
H |
183.6 |
180.0 |
| HA |
CA |
N |
H2 |
295.2 |
293.8 |
| N |
CA |
HA |
CB |
119.5 |
120.0 |
| N |
CA |
HA |
C |
240.5 |
240.0 |
| CB |
CA |
HA |
C |
121.0 |
120.0 |
| HA |
CA |
CB |
CG |
339.4 |
55.0 |
| HA |
CA |
CB |
HB2 |
219.3 |
175.0 |
| HA |
CA |
CB |
HB3 |
99.4 |
295.0 |
| HA |
CA |
C |
O |
122.7 |
220.0 |
| HA |
CA |
C |
NT |
302.9 |
40.0 |
| CG |
CB |
CA |
C |
99.6 |
175.0 |
| CG |
CB |
CA |
HA |
339.4 |
55.0 |
| CA |
CB |
CG |
HB2 |
239.8 |
120.0 |
| CA |
CB |
CG |
HB3 |
119.9 |
240.0 |
| HB2 |
CB |
CG |
HB3 |
240.1 |
120.1 |
| CD |
CG |
CB |
HG2 |
119.9 |
240.0 |
| CD |
CG |
CB |
HG3 |
239.8 |
120.0 |
| CB |
CG |
CD |
NE |
71.3 |
180.0 |
| CB |
CG |
CD |
HD2 |
311.2 |
300.0 |
| CB |
CG |
CD |
HD3 |
191.3 |
60.0 |
| HG2 |
CG |
CB |
HG3 |
119.9 |
240.0 |
| HB2 |
CB |
CA |
C |
339.5 |
295.0 |
| HB2 |
CB |
CA |
HA |
219.3 |
175.0 |
| CA |
CB |
HB2 |
CG |
120.2 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
240.1 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
119.9 |
240.0 |
| HB2 |
CB |
CG |
CD |
5.8 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
245.9 |
180.1 |
| HB2 |
CB |
CG |
HG3 |
126.0 |
300.0 |
| HB3 |
CB |
CA |
C |
219.6 |
55.0 |
| HB3 |
CB |
CA |
HA |
99.4 |
295.0 |
| CA |
CB |
HB3 |
CG |
239.9 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
120.1 |
240.0 |
| CG |
CB |
HB3 |
HB2 |
240.1 |
120.0 |
| HB3 |
CB |
CG |
CD |
125.7 |
300.0 |
| HB3 |
CB |
CG |
HG2 |
5.8 |
60.0 |
| HB3 |
CB |
CG |
HG3 |
245.9 |
180.0 |
| CD |
CG |
CB |
HB2 |
5.8 |
60.0 |
| CD |
CG |
CB |
HB3 |
125.7 |
300.0 |
| CB |
CG |
CD |
HG2 |
240.1 |
120.0 |
| CB |
CG |
CD |
HG3 |
120.2 |
240.1 |
| HG2 |
CG |
CD |
HG3 |
240.1 |
120.1 |
| NE |
CD |
CG |
HD2 |
120.1 |
240.1 |
| NE |
CD |
CG |
HD3 |
240.0 |
120.0 |
| CG |
CD |
NE |
CZ |
94.9 |
180.0 |
| CG |
CD |
NE |
HE |
275.3 |
360.0 |
| HD2 |
CD |
CG |
HD3 |
119.9 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
245.9 |
180.1 |
| HG2 |
CG |
CB |
HB3 |
5.8 |
60.0 |
| CB |
CG |
HG2 |
CD |
120.1 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
240.0 |
119.9 |
| CD |
CG |
HG2 |
HG3 |
119.9 |
239.9 |
| HG2 |
CG |
CD |
NE |
191.2 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
71.1 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
311.2 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
126.0 |
300.0 |
| HG3 |
CG |
CB |
HB3 |
245.9 |
180.0 |
| CB |
CG |
HG3 |
CD |
239.7 |
120.0 |
| CB |
CG |
HG3 |
HG2 |
119.9 |
240.0 |
| CD |
CG |
HG3 |
HG2 |
240.2 |
120.1 |
| HG3 |
CG |
CD |
NE |
311.1 |
300.0 |
| HG3 |
CG |
CD |
HD2 |
191.0 |
59.9 |
| HG3 |
CG |
CD |
HD3 |
71.1 |
179.9 |
| NE |
CD |
CG |
HG2 |
191.2 |
60.0 |
| NE |
CD |
CG |
HG3 |
311.1 |
300.0 |
| CG |
CD |
NE |
HD2 |
239.9 |
119.9 |
| CG |
CD |
NE |
HD3 |
120.0 |
240.0 |
| HD2 |
CD |
NE |
HD3 |
240.0 |
120.0 |
| CZ |
NE |
CD |
HE |
179.7 |
180.0 |
| CD |
NE |
CZ |
NH1 |
81.2 |
359.9 |
| CD |
NE |
CZ |
NH2 |
261.1 |
179.9 |
| HD2 |
CD |
CG |
HG2 |
71.1 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
191.0 |
59.9 |
| CG |
CD |
HD2 |
NE |
120.1 |
240.1 |
| CG |
CD |
HD2 |
HD3 |
240.1 |
120.0 |
| NE |
CD |
HD2 |
HD3 |
120.0 |
240.0 |
| HD2 |
CD |
NE |
CZ |
215.0 |
60.1 |
| HD2 |
CD |
NE |
HE |
35.4 |
240.0 |
| HD3 |
CD |
CG |
HG2 |
311.2 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
71.1 |
179.9 |
| CG |
CD |
HD3 |
NE |
240.0 |
120.0 |
| CG |
CD |
HD3 |
HD2 |
120.0 |
240.0 |
| NE |
CD |
HD3 |
HD2 |
240.0 |
120.0 |
| HD3 |
CD |
NE |
CZ |
335.0 |
300.0 |
| HD3 |
CD |
NE |
HE |
155.3 |
120.0 |
| CZ |
NE |
CD |
HD2 |
215.0 |
60.1 |
| CZ |
NE |
CD |
HD3 |
335.0 |
300.0 |
| CD |
NE |
CZ |
HE |
180.3 |
180.0 |
| NH1 |
CZ |
NE |
NH2 |
180.1 |
180.0 |
| NE |
CZ |
NH1 |
HH11 |
359.9 |
0.0 |
| NE |
CZ |
NH1 |
HH12 |
180.0 |
180.0 |
| NE |
CZ |
NH2 |
HH21 |
0.0 |
179.9 |
| NE |
CZ |
NH2 |
HH22 |
180.0 |
0.1 |
| HE |
NE |
CD |
HD2 |
35.4 |
240.0 |
| HE |
NE |
CD |
HD3 |
155.3 |
120.0 |
| CD |
NE |
HE |
CZ |
179.7 |
180.0 |
| HE |
NE |
CZ |
NH1 |
260.9 |
180.0 |
| HE |
NE |
CZ |
NH2 |
80.7 |
360.0 |
| NH1 |
CZ |
NE |
HE |
260.9 |
180.0 |
| NE |
CZ |
NH1 |
NH2 |
179.9 |
180.0 |
| NH1 |
CZ |
NH2 |
HH21 |
179.9 |
359.9 |
| NH1 |
CZ |
NH2 |
HH22 |
359.9 |
180.0 |
| HH11 |
NH1 |
CZ |
HH12 |
179.9 |
180.0 |
| NH2 |
CZ |
NE |
HE |
80.7 |
360.0 |
| NE |
CZ |
NH2 |
NH1 |
180.1 |
180.0 |
| NH2 |
CZ |
NH1 |
HH11 |
180.0 |
180.0 |
| NH2 |
CZ |
NH1 |
HH12 |
0.1 |
0.0 |
| HH21 |
NH2 |
CZ |
HH22 |
180.0 |
179.9 |
| HH11 |
NH1 |
CZ |
NH2 |
180.0 |
180.0 |
| CZ |
NH1 |
HH11 |
HH12 |
180.1 |
180.0 |
| HH12 |
NH1 |
CZ |
NH2 |
0.1 |
0.0 |
| CZ |
NH1 |
HH12 |
HH11 |
179.9 |
180.0 |
| CZ |
NH2 |
HH21 |
HH22 |
180.0 |
180.1 |
| CZ |
NH2 |
HH22 |
HH21 |
180.0 |
179.9 |
| O |
C |
CA |
HA |
122.7 |
220.0 |
| CA |
C |
O |
NT |
180.2 |
179.9 |
| O |
C |
NT |
HNT1 |
180.0 |
180.0 |
| O |
C |
NT |
HNT2 |
0.1 |
359.9 |
| NT |
C |
CA |
HA |
302.9 |
40.0 |
| CA |
C |
NT |
O |
179.9 |
180.1 |
| HNT1 |
NT |
C |
HNT2 |
179.9 |
180.1 |
| C |
NT |
HNT1 |
HNT2 |
180.1 |
179.9 |
| C |
NT |
HNT2 |
HNT1 |
179.9 |
180.1 |