PDB Chemical Component AAP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AAP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
CA |
1.503 |
1.507 |
| C |
O |
1.235 |
1.213 |
| C |
N |
1.334 |
1.348 |
| CA |
C1 |
1.555 |
1.507 |
| CA |
N' |
1.443 |
1.464 |
| CA |
HA |
1.115 |
1.089 |
| N |
HN1 |
1.020 |
0.970 |
| N |
HN2 |
1.020 |
0.969 |
| C1 |
C2 |
1.390 |
1.381 |
| C1 |
C6 |
1.414 |
1.384 |
| C2 |
C3 |
1.402 |
1.384 |
| C2 |
CL2 |
1.745 |
1.737 |
| C3 |
C4 |
1.415 |
1.382 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C5 |
1.378 |
1.381 |
| C4 |
H4 |
1.103 |
1.080 |
| C5 |
C6 |
1.383 |
1.384 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
CL6 |
1.704 |
1.736 |
| N' |
C1' |
1.384 |
1.386 |
| N' |
HN' |
1.020 |
0.970 |
| C1' |
C2' |
1.407 |
1.405 |
| C1' |
C6' |
1.389 |
1.390 |
| C2' |
C3' |
1.372 |
1.401 |
| C2' |
C' |
1.548 |
1.467 |
| C3' |
C4' |
1.380 |
1.376 |
| C3' |
H3' |
1.103 |
1.079 |
| C4' |
C5' |
1.373 |
1.388 |
| C4' |
H4' |
1.103 |
1.079 |
| C5' |
C6' |
1.377 |
1.379 |
| C5' |
CM5 |
1.536 |
1.507 |
| C6' |
H6' |
1.103 |
1.079 |
| C' |
O' |
1.242 |
1.213 |
| C' |
CM' |
1.526 |
1.507 |
| CM' |
HM'1 |
1.115 |
1.089 |
| CM' |
HM'2 |
1.115 |
1.090 |
| CM' |
HM'3 |
1.114 |
1.091 |
| CM5 |
HM51 |
1.115 |
1.089 |
| CM5 |
HM52 |
1.115 |
1.090 |
| CM5 |
HM53 |
1.116 |
1.090 |
Bond Angles for AAP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O |
117.3 |
120.0 |
| CA |
C |
N |
119.5 |
120.0 |
| C |
CA |
C1 |
113.6 |
109.4 |
| C |
CA |
N' |
110.1 |
109.5 |
| C |
CA |
HA |
107.5 |
109.4 |
| O |
C |
N |
123.1 |
120.0 |
| C |
N |
HN1 |
123.1 |
120.0 |
| C |
N |
HN2 |
119.5 |
120.0 |
| C1 |
CA |
N' |
113.0 |
109.5 |
| C1 |
CA |
HA |
104.1 |
109.5 |
| CA |
C1 |
C2 |
120.7 |
120.1 |
| CA |
C1 |
C6 |
119.9 |
120.0 |
| N' |
CA |
HA |
108.2 |
109.5 |
| CA |
N' |
C1' |
127.2 |
120.0 |
| CA |
N' |
HN' |
106.0 |
120.0 |
| HN1 |
N |
HN2 |
117.4 |
120.0 |
| C2 |
C1 |
C6 |
119.3 |
119.9 |
| C1 |
C2 |
C3 |
119.2 |
120.1 |
| C1 |
C2 |
CL2 |
122.9 |
120.0 |
| C1 |
C6 |
C5 |
121.3 |
120.0 |
| C1 |
C6 |
CL6 |
121.7 |
120.0 |
| C3 |
C2 |
CL2 |
117.7 |
120.0 |
| C2 |
C3 |
C4 |
120.6 |
120.0 |
| C2 |
C3 |
H3 |
119.2 |
120.0 |
| C4 |
C3 |
H3 |
120.2 |
120.0 |
| C3 |
C4 |
C5 |
119.8 |
120.0 |
| C3 |
C4 |
H4 |
121.4 |
119.9 |
| C5 |
C4 |
H4 |
118.8 |
120.0 |
| C4 |
C5 |
C6 |
119.8 |
120.0 |
| C4 |
C5 |
H5 |
119.9 |
120.0 |
| C6 |
C5 |
H5 |
120.3 |
120.0 |
| C5 |
C6 |
CL6 |
117.0 |
120.0 |
| C1' |
N' |
HN' |
106.0 |
120.0 |
| N' |
C1' |
C2' |
121.0 |
120.3 |
| N' |
C1' |
C6' |
118.9 |
120.2 |
| C2' |
C1' |
C6' |
120.1 |
119.6 |
| C1' |
C2' |
C3' |
118.3 |
119.6 |
| C1' |
C2' |
C' |
123.2 |
120.2 |
| C1' |
C6' |
C5' |
120.4 |
120.1 |
| C1' |
C6' |
H6' |
120.2 |
120.0 |
| C3' |
C2' |
C' |
118.5 |
120.2 |
| C2' |
C3' |
C4' |
121.1 |
119.9 |
| C2' |
C3' |
H3' |
119.1 |
120.1 |
| C2' |
C' |
O' |
121.2 |
120.0 |
| C2' |
C' |
CM' |
121.1 |
120.0 |
| C4' |
C3' |
H3' |
119.8 |
120.0 |
| C3' |
C4' |
C5' |
120.8 |
120.4 |
| C3' |
C4' |
H4' |
119.9 |
119.8 |
| C5' |
C4' |
H4' |
119.3 |
119.8 |
| C4' |
C5' |
C6' |
119.3 |
120.5 |
| C4' |
C5' |
CM5 |
119.7 |
119.7 |
| C6' |
C5' |
CM5 |
121.0 |
119.8 |
| C5' |
C6' |
H6' |
119.4 |
120.0 |
| C5' |
CM5 |
HM51 |
119.6 |
109.5 |
| C5' |
CM5 |
HM52 |
108.5 |
109.4 |
| C5' |
CM5 |
HM53 |
108.6 |
109.4 |
| O' |
C' |
CM' |
117.7 |
120.0 |
| C' |
CM' |
HM'1 |
121.1 |
109.5 |
| C' |
CM' |
HM'2 |
108.0 |
109.5 |
| C' |
CM' |
HM'3 |
108.0 |
109.5 |
| HM'1 |
CM' |
HM'2 |
108.0 |
109.5 |
| HM'1 |
CM' |
HM'3 |
108.1 |
109.5 |
| HM'2 |
CM' |
HM'3 |
101.9 |
109.4 |
| HM51 |
CM5 |
HM52 |
108.6 |
109.5 |
| HM51 |
CM5 |
HM53 |
108.5 |
109.5 |
| HM52 |
CM5 |
HM53 |
101.4 |
109.5 |
Torsion Angles for AAP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
CA |
N |
179.6 |
180.0 |
| CA |
C |
N |
HN1 |
359.5 |
191.9 |
| CA |
C |
N |
HN2 |
180.0 |
12.1 |
| C1 |
CA |
C |
N' |
127.8 |
120.0 |
| C1 |
CA |
C |
HA |
245.4 |
240.0 |
| C |
CA |
C1 |
C2 |
298.7 |
288.4 |
| C |
CA |
C1 |
C6 |
121.2 |
108.2 |
| N' |
CA |
C |
HA |
117.6 |
120.0 |
| C |
CA |
N' |
C1' |
214.3 |
275.6 |
| C |
CA |
N' |
HN' |
89.1 |
95.5 |
| CA |
C |
O |
N |
180.5 |
180.0 |
| O |
C |
CA |
C1 |
336.2 |
286.5 |
| O |
C |
CA |
N' |
208.4 |
166.6 |
| O |
C |
CA |
HA |
90.8 |
46.5 |
| O |
C |
N |
HN1 |
180.0 |
11.9 |
| O |
C |
N |
HN2 |
0.5 |
192.0 |
| CA |
C |
N |
O |
179.5 |
180.0 |
| N |
C |
CA |
C1 |
156.6 |
106.5 |
| N |
C |
CA |
N' |
28.8 |
346.5 |
| N |
C |
CA |
HA |
271.2 |
226.5 |
| HN1 |
N |
C |
HN2 |
179.5 |
179.9 |
| C1 |
CA |
C |
O |
336.2 |
286.5 |
| C1 |
CA |
C |
N |
156.6 |
106.5 |
| C |
CA |
C1 |
N' |
233.7 |
240.0 |
| C |
CA |
C1 |
HA |
116.6 |
120.0 |
| N' |
CA |
C1 |
HA |
242.9 |
239.9 |
| C1 |
CA |
N' |
C1' |
86.2 |
155.7 |
| C1 |
CA |
N' |
HN' |
321.0 |
335.6 |
| C2 |
C1 |
CA |
C6 |
177.6 |
180.2 |
| CA |
C1 |
C2 |
C3 |
180.8 |
180.0 |
| CA |
C1 |
C2 |
CL2 |
356.0 |
0.1 |
| CA |
C1 |
C6 |
C5 |
179.3 |
179.7 |
| CA |
C1 |
C6 |
CL6 |
0.3 |
0.2 |
| N' |
CA |
C |
O |
208.4 |
166.6 |
| N' |
CA |
C |
N |
28.8 |
346.5 |
| C |
CA |
N' |
C1 |
128.1 |
119.9 |
| C |
CA |
N' |
HA |
242.8 |
240.0 |
| C1 |
CA |
N' |
HA |
114.7 |
120.1 |
| N' |
CA |
C1 |
C2 |
65.0 |
48.4 |
| N' |
CA |
C1 |
C6 |
247.4 |
228.2 |
| C1' |
N' |
CA |
HN' |
125.2 |
180.1 |
| CA |
N' |
C1' |
C2' |
189.4 |
185.3 |
| CA |
N' |
C1' |
C6' |
10.4 |
5.6 |
| HA |
CA |
C |
O |
90.8 |
46.5 |
| HA |
CA |
C |
N |
271.2 |
226.5 |
| C |
CA |
HA |
C1 |
239.2 |
240.1 |
| C |
CA |
HA |
N' |
118.8 |
120.0 |
| C1 |
CA |
HA |
N' |
239.6 |
240.0 |
| HA |
CA |
C1 |
C2 |
182.1 |
168.5 |
| HA |
CA |
C1 |
C6 |
4.6 |
348.3 |
| HA |
CA |
N' |
C1' |
331.5 |
35.6 |
| HA |
CA |
N' |
HN' |
206.3 |
215.5 |
| C |
N |
HN1 |
HN2 |
180.5 |
180.1 |
| C |
N |
HN2 |
HN1 |
179.6 |
179.9 |
| C2 |
C1 |
CA |
N' |
65.0 |
48.4 |
| C2 |
C1 |
CA |
HA |
182.1 |
168.5 |
| CA |
C1 |
C2 |
C6 |
182.4 |
179.8 |
| C2 |
C1 |
C6 |
C5 |
1.6 |
359.5 |
| C2 |
C1 |
C6 |
CL6 |
182.7 |
180.0 |
| C3 |
C2 |
C1 |
CL2 |
184.9 |
179.8 |
| C1 |
C2 |
C3 |
C4 |
1.2 |
0.1 |
| C1 |
C2 |
C3 |
H3 |
181.2 |
179.9 |
| C6 |
C1 |
CA |
N' |
247.4 |
228.2 |
| C6 |
C1 |
CA |
HA |
4.6 |
348.3 |
| CA |
C1 |
C6 |
C2 |
177.6 |
180.2 |
| C6 |
C1 |
C2 |
C3 |
358.4 |
0.1 |
| C6 |
C1 |
C2 |
CL2 |
173.6 |
180.3 |
| C4 |
C5 |
C6 |
C1 |
358.7 |
0.6 |
| C1 |
C6 |
C5 |
H5 |
178.7 |
180.3 |
| C5 |
C6 |
C1 |
CL6 |
179.0 |
179.5 |
| C3 |
C2 |
C1 |
C6 |
358.4 |
0.1 |
| C1 |
C2 |
C3 |
CL2 |
175.4 |
180.2 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.2 |
| C2 |
C3 |
C4 |
C5 |
359.2 |
359.9 |
| C2 |
C3 |
C4 |
H4 |
179.1 |
179.9 |
| CL2 |
C2 |
C1 |
C6 |
173.6 |
180.3 |
| C1 |
C2 |
CL2 |
C3 |
184.8 |
179.8 |
| CL2 |
C2 |
C3 |
C4 |
185.8 |
180.0 |
| CL2 |
C2 |
C3 |
H3 |
5.8 |
359.8 |
| C4 |
C3 |
C2 |
CL2 |
185.8 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
179.8 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
0.9 |
359.7 |
| C3 |
C4 |
C5 |
H5 |
180.9 |
180.0 |
| H3 |
C3 |
C2 |
CL2 |
5.8 |
359.8 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.2 |
| H3 |
C3 |
C4 |
C5 |
179.2 |
180.1 |
| H3 |
C3 |
C4 |
H4 |
359.1 |
0.1 |
| C1 |
C6 |
C5 |
C4 |
358.7 |
0.6 |
| C5 |
C4 |
C3 |
H3 |
179.2 |
180.1 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
| C4 |
C5 |
C6 |
CL6 |
177.7 |
180.0 |
| H4 |
C4 |
C3 |
H3 |
359.1 |
0.1 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
180.9 |
179.7 |
| H4 |
C4 |
C5 |
H5 |
0.9 |
0.0 |
| C1 |
C6 |
C5 |
CL6 |
181.0 |
180.5 |
| C6 |
C5 |
C4 |
H4 |
180.9 |
179.7 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
| H5 |
C5 |
C4 |
H4 |
0.9 |
0.0 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
| H5 |
C5 |
C6 |
CL6 |
357.7 |
359.7 |
| C1 |
C6 |
CL6 |
C5 |
179.0 |
179.5 |
| CL6 |
C6 |
C5 |
H5 |
357.7 |
359.7 |
| C1' |
N' |
CA |
HA |
331.5 |
35.6 |
| CA |
N' |
C1' |
HN' |
234.8 |
179.9 |
| C2' |
C1' |
N' |
C6' |
178.9 |
179.6 |
| N' |
C1' |
C2' |
C3' |
182.2 |
179.9 |
| N' |
C1' |
C2' |
C' |
4.3 |
0.2 |
| N' |
C1' |
C6' |
C5' |
178.1 |
180.0 |
| N' |
C1' |
C6' |
H6' |
358.0 |
359.9 |
| HN' |
N' |
CA |
HA |
206.3 |
215.5 |
| CA |
N' |
HN' |
C1' |
137.4 |
180.1 |
| HN' |
N' |
C1' |
C2' |
314.6 |
5.4 |
| HN' |
N' |
C1' |
C6' |
135.7 |
185.7 |
| C2' |
C1' |
N' |
HN' |
314.6 |
5.4 |
| N' |
C1' |
C2' |
C6' |
181.1 |
180.4 |
| C2' |
C1' |
C6' |
C5' |
359.1 |
0.4 |
| C2' |
C1' |
C6' |
H6' |
179.1 |
180.3 |
| C3' |
C2' |
C1' |
C' |
177.9 |
179.7 |
| C1' |
C2' |
C3' |
C4' |
359.2 |
0.2 |
| C1' |
C2' |
C3' |
H3' |
179.2 |
180.2 |
| C1' |
C2' |
C' |
O' |
356.7 |
354.0 |
| C1' |
C2' |
C' |
CM' |
174.3 |
174.0 |
| C6' |
C1' |
N' |
HN' |
135.7 |
185.7 |
| N' |
C1' |
C6' |
C2' |
178.9 |
179.6 |
| C6' |
C1' |
C2' |
C3' |
1.1 |
359.6 |
| C6' |
C1' |
C2' |
C' |
183.2 |
179.8 |
| C4' |
C5' |
C6' |
C1' |
0.4 |
359.9 |
| C1' |
C6' |
C5' |
CM5 |
178.9 |
179.8 |
| C5' |
C6' |
C1' |
H6' |
180.1 |
180.1 |
| C3' |
C2' |
C1' |
C6' |
1.1 |
359.6 |
| C1' |
C2' |
C3' |
C' |
182.0 |
180.3 |
| C3' |
C2' |
C' |
O' |
178.8 |
174.3 |
| C3' |
C2' |
C' |
CM' |
356.4 |
354.3 |
| C4' |
C3' |
C2' |
H3' |
180.0 |
180.1 |
| C2' |
C3' |
C4' |
C5' |
0.3 |
360.0 |
| C2' |
C3' |
C4' |
H4' |
180.3 |
180.0 |
| C' |
C2' |
C1' |
C6' |
183.2 |
179.8 |
| C1' |
C2' |
C' |
C3' |
177.9 |
179.7 |
| C' |
C2' |
C3' |
C4' |
177.2 |
180.0 |
| C' |
C2' |
C3' |
H3' |
357.2 |
359.9 |
| O' |
C' |
C2' |
CM' |
182.4 |
180.0 |
| C2' |
C' |
CM' |
HM'1 |
180.0 |
180.0 |
| C2' |
C' |
CM' |
HM'2 |
305.2 |
300.0 |
| C2' |
C' |
CM' |
HM'3 |
54.7 |
60.0 |
| C4' |
C3' |
C2' |
C' |
177.2 |
180.0 |
| C2' |
C3' |
C4' |
H3' |
180.0 |
179.9 |
| C5' |
C4' |
C3' |
H4' |
180.0 |
180.0 |
| C3' |
C4' |
C5' |
C6' |
359.9 |
359.9 |
| C3' |
C4' |
C5' |
CM5 |
181.3 |
180.1 |
| H3' |
C3' |
C2' |
C' |
357.2 |
359.9 |
| C2' |
C3' |
H3' |
C4' |
180.0 |
180.1 |
| H3' |
C3' |
C4' |
C5' |
180.3 |
180.1 |
| H3' |
C3' |
C4' |
H4' |
0.3 |
0.1 |
| C1' |
C6' |
C5' |
C4' |
0.4 |
359.9 |
| C5' |
C4' |
C3' |
H3' |
180.3 |
180.1 |
| C3' |
C4' |
C5' |
H4' |
180.0 |
180.0 |
| C6' |
C5' |
C4' |
CM5 |
178.6 |
179.9 |
| C4' |
C5' |
C6' |
H6' |
180.4 |
180.0 |
| C4' |
C5' |
CM5 |
HM51 |
180.0 |
90.0 |
| C4' |
C5' |
CM5 |
HM52 |
305.3 |
210.0 |
| C4' |
C5' |
CM5 |
HM53 |
54.8 |
329.9 |
| H4' |
C4' |
C3' |
H3' |
0.3 |
0.1 |
| C3' |
C4' |
H4' |
C5' |
180.0 |
180.0 |
| H4' |
C4' |
C5' |
C6' |
179.9 |
180.0 |
| H4' |
C4' |
C5' |
CM5 |
1.3 |
0.1 |
| C1' |
C6' |
C5' |
H6' |
179.9 |
179.9 |
| C6' |
C5' |
C4' |
H4' |
179.9 |
180.0 |
| C4' |
C5' |
C6' |
CM5 |
181.4 |
180.1 |
| C6' |
C5' |
CM5 |
HM51 |
1.4 |
270.1 |
| C6' |
C5' |
CM5 |
HM52 |
126.7 |
30.1 |
| C6' |
C5' |
CM5 |
HM53 |
236.2 |
150.0 |
| CM5 |
C5' |
C4' |
H4' |
1.3 |
0.1 |
| C4' |
C5' |
CM5 |
C6' |
178.6 |
179.9 |
| CM5 |
C5' |
C6' |
H6' |
359.0 |
359.9 |
| HM51 |
CM5 |
C5' |
HM52 |
234.7 |
240.0 |
| HM51 |
CM5 |
C5' |
HM53 |
125.2 |
120.1 |
| HM52 |
CM5 |
C5' |
HM53 |
250.5 |
240.1 |
| C1' |
C6' |
H6' |
C5' |
180.1 |
180.1 |
| H6' |
C6' |
C5' |
CM5 |
359.0 |
359.9 |
| C2' |
C' |
O' |
CM' |
177.7 |
180.0 |
| O' |
C' |
CM' |
HM'1 |
357.7 |
0.1 |
| O' |
C' |
CM' |
HM'2 |
122.9 |
120.1 |
| O' |
C' |
CM' |
HM'3 |
232.4 |
240.0 |
| C2' |
C' |
CM' |
O' |
182.3 |
180.0 |
| HM'1 |
CM' |
C' |
HM'2 |
234.8 |
240.0 |
| HM'1 |
CM' |
C' |
HM'3 |
125.3 |
120.0 |
| HM'2 |
CM' |
C' |
HM'3 |
250.5 |
240.0 |
| C' |
CM' |
HM'1 |
HM'2 |
125.2 |
120.0 |
| C' |
CM' |
HM'1 |
HM'3 |
234.7 |
240.0 |
| HM'2 |
CM' |
HM'1 |
HM'3 |
109.5 |
119.9 |
| C' |
CM' |
HM'2 |
HM'1 |
227.4 |
240.0 |
| C' |
CM' |
HM'2 |
HM'3 |
113.6 |
120.0 |
| HM'1 |
CM' |
HM'2 |
HM'3 |
246.3 |
240.0 |
| C' |
CM' |
HM'3 |
HM'1 |
132.7 |
120.0 |
| C' |
CM' |
HM'3 |
HM'2 |
246.4 |
240.0 |
| HM'1 |
CM' |
HM'3 |
HM'2 |
113.7 |
120.0 |
| C5' |
CM5 |
HM51 |
HM52 |
125.3 |
119.9 |
| C5' |
CM5 |
HM51 |
HM53 |
234.8 |
240.0 |
| HM52 |
CM5 |
HM51 |
HM53 |
109.5 |
120.1 |
| C5' |
CM5 |
HM52 |
HM51 |
228.4 |
240.0 |
| C5' |
CM5 |
HM52 |
HM53 |
114.2 |
119.9 |
| HM51 |
CM5 |
HM52 |
HM53 |
245.8 |
239.9 |
| C5' |
CM5 |
HM53 |
HM51 |
131.5 |
120.1 |
| C5' |
CM5 |
HM53 |
HM52 |
245.8 |
240.1 |
| HM51 |
CM5 |
HM53 |
HM52 |
114.3 |
120.0 |