PDB Chemical Component AAM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AAM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C8A N9A 1.351 1.304
C8A N7A 1.348 1.352
C8A H8A 1.104 1.080
N9A C4A 1.377 1.346
C4A C5A 1.393 1.405
C4A N3A 1.354 1.336
C5A N7A 1.410 1.378
C5A C6A 1.436 1.396
N7A C1' 1.526 1.464
N3A C2A 1.348 1.315
C2A N1A 1.373 1.320
C2A H2A 1.102 1.080
N1A C6A 1.358 1.330
C6A N6A 1.430 1.386
N6A HN61 1.020 0.970
N6A HN62 1.020 0.970
P O1P 1.501 1.480
P O2P 1.491 1.610
P O3P 1.483 1.608
P O6' 1.601 1.609
O2P HOP2 0.949 0.967
O3P HOP3 0.949 0.967
O6' C5' 1.429 1.428
C5' C4' 1.498 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' O5' 1.450 1.435
C4' C3' 1.496 1.550
C4' H4' 1.115 1.090
O5' C1' 1.450 1.431
C3' O3' 1.427 1.429
C3' C2' 1.506 1.554
C3' H3' 1.115 1.089
O3' HO3' 0.950 0.966
C2' O2' 1.439 1.429
C2' C1' 1.535 1.543
C2' H2' 1.116 1.090
O2' HO2' 0.950 0.968
C1' H1' 1.115 1.090

Bond Angles for AAM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N9A C8A N7A 115.0 110.1
N9A C8A H8A 122.6 125.0
C8A N9A C4A 106.0 109.8
N7A C8A H8A 122.4 124.9
C8A N7A C5A 102.1 107.1
C8A N7A C1' 125.4 126.4
N9A C4A C5A 106.4 106.8
N9A C4A N3A 126.0 134.5
C5A C4A N3A 127.6 118.7
C4A C5A N7A 110.4 106.1
C4A C5A C6A 116.9 118.6
C4A N3A C2A 111.0 120.6
N7A C5A C6A 132.6 135.3
C5A N7A C1' 132.5 126.5
C5A C6A N1A 116.9 118.6
C5A C6A N6A 127.0 120.7
N7A C1' O5' 119.2 109.8
N7A C1' C2' 116.2 109.8
N7A C1' H1' 94.8 109.8
N3A C2A N1A 127.9 122.5
N3A C2A H2A 115.0 118.8
N1A C2A H2A 117.2 118.8
C2A N1A C6A 119.7 121.1
N1A C6A N6A 116.1 120.7
C6A N6A HN61 127.0 120.0
C6A N6A HN62 106.1 120.0
HN61 N6A HN62 106.1 120.0
O1P P O2P 109.2 109.4
O1P P O3P 109.8 109.5
O1P P O6' 111.5 109.4
O2P P O3P 109.4 109.5
O2P P O6' 109.8 109.5
P O2P HOP2 109.2 106.8
O3P P O6' 107.0 109.5
P O3P HOP3 109.8 106.8
P O6' C5' 122.1 106.8
O6' C5' C4' 107.4 109.5
O6' C5' H5'1 113.0 109.5
O6' C5' H5'2 113.0 109.4
C4' C5' H5'1 113.0 109.5
C4' C5' H5'2 113.0 109.5
C5' C4' O5' 111.5 110.4
C5' C4' C3' 116.7 110.3
C5' C4' H4' 101.4 110.3
H5'1 C5' H5'2 97.4 109.4
O5' C4' C3' 104.8 105.1
O5' C4' H4' 114.1 110.3
C4' O5' C1' 110.5 110.0
C3' C4' H4' 108.6 110.3
C4' C3' O3' 111.6 111.1
C4' C3' C2' 100.1 100.9
C4' C3' H3' 113.7 111.2
O5' C1' C2' 102.0 107.6
O5' C1' H1' 110.9 109.9
O3' C3' C2' 108.1 111.1
O3' C3' H3' 106.4 111.0
C3' O3' HO3' 111.6 106.8
C2' C3' H3' 116.8 111.1
C3' C2' O2' 103.4 110.9
C3' C2' C1' 102.6 102.2
C3' C2' H2' 118.6 110.8
O2' C2' C1' 112.9 111.0
O2' C2' H2' 109.2 110.7
C2' O2' HO2' 103.4 106.8
C1' C2' H2' 110.0 111.0
C2' C1' H1' 114.2 109.9

Torsion Angles for AAM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N7A C8A N9A H8A 180.0 180.0
N9A C8A N7A C5A 2.6 359.7
N9A C8A N7A C1' 185.3 180.0
C8A N9A C4A C5A 358.9 0.3
C8A N9A C4A N3A 181.3 180.0
N9A C8A N7A H8A 180.0 180.0
N7A C8A N9A C4A 359.0 0.0
C4A C5A N7A C8A 356.7 0.4
C8A N7A C5A C6A 179.9 179.5
C5A N7A C8A C1' 177.3 179.7
C8A N7A C1' O5' 196.2 336.3
C8A N7A C1' C2' 319.0 94.5
C8A N7A C1' H1' 79.0 215.4
N9A C8A H8A N7A 180.0 180.1
H8A C8A N9A C4A 178.9 180.0
H8A C8A N7A C5A 182.7 179.8
H8A C8A N7A C1' 5.4 0.1
C4A N9A C8A N7A 359.0 0.0
C4A N9A C8A H8A 178.9 180.0
C5A C4A N9A N3A 177.6 180.3
N9A C4A C5A N7A 2.8 359.6
N9A C4A C5A C6A 180.2 180.4
N9A C4A N3A C2A 179.0 180.0
C8A N7A C5A C4A 356.7 0.4
N9A C4A C5A N3A 182.4 179.8
C5A C4A N3A C2A 1.9 359.7
N7A C5A C4A C6A 182.6 179.2
C4A C5A N7A C1' 173.8 180.1
C4A C5A C6A N1A 0.2 359.4
C4A C5A C6A N6A 181.4 179.8
N9A C4A N3A C5A 177.1 180.3
N3A C4A C5A N7A 180.4 179.8
N3A C4A C5A C6A 357.8 0.6
C4A N3A C2A N1A 0.4 360.0
C4A N3A C2A H2A 180.4 180.0
C5A N7A C8A H8A 182.7 179.8
C8A N7A C5A C1' 183.0 180.3
N7A C5A C4A N3A 180.4 179.8
C4A C5A N7A C6A 176.9 181.0
N7A C5A C6A N1A 176.9 180.5
N7A C5A C6A N6A 358.1 0.8
C5A N7A C1' O5' 19.8 156.6
C5A N7A C1' C2' 142.5 274.8
C5A N7A C1' H1' 262.6 35.7
C6A C5A C4A N3A 357.8 0.6
C4A C5A C6A N7A 183.3 179.0
C6A C5A N7A C1' 356.9 359.2
C2A N1A C6A C5A 1.7 0.3
N1A C6A C5A N6A 178.8 179.7
C5A C6A N6A HN61 180.0 186.6
C5A C6A N6A HN62 54.7 6.2
C1' N7A C8A H8A 5.4 0.1
C8A N7A C1' C5A 176.4 179.7
C1' N7A C5A C6A 356.9 359.2
C4' O5' C1' N7A 117.6 117.8
O5' C1' N7A C2' 237.2 241.8
O5' C1' N7A H1' 117.2 120.9
C3' C2' C1' N7A 263.7 219.1
O2' C2' C1' N7A 14.3 337.4
N7A C1' C2' H2' 136.6 100.9
C2' C1' N7A H1' 240.0 239.1
N1A C2A N3A H2A 180.0 180.0
N3A C2A N1A C6A 357.8 360.0
C5A C6A N1A C2A 1.7 0.3
N3A C2A N1A H2A 180.0 180.0
C2A N1A C6A N6A 180.7 180.0
N3A C2A H2A N1A 180.0 180.0
H2A C2A N1A C6A 177.8 179.9
C5A C6A N1A N6A 181.1 180.3
C6A N1A C2A H2A 177.8 179.9
N1A C6A N6A HN61 1.2 6.9
N1A C6A N6A HN62 235.9 186.6
C5A C6A N6A N1A 178.8 179.7
HN61 N6A C6A HN62 125.3 180.3
C6A N6A HN61 HN62 234.7 179.7
C6A N6A HN62 HN61 137.3 180.3
O2P P O1P O3P 119.9 120.0
O2P P O1P O6' 238.4 240.1
O1P P O2P HOP2 180.0 299.9
O3P P O1P O6' 118.5 120.0
O1P P O3P HOP3 180.0 180.0
O1P P O6' C5' 43.4 60.1
O1P P O2P O3P 239.8 240.0
O1P P O2P O6' 122.6 119.9
O3P P O2P O6' 242.8 239.9
O2P P O3P HOP3 60.1 60.0
O2P P O6' C5' 164.6 180.0
O1P P O3P O2P 119.9 120.0
O1P P O3P O6' 238.8 240.0
O2P P O3P O6' 119.0 120.1
O3P P O2P HOP2 300.2 59.9
O3P P O6' C5' 283.2 300.0
O1P P O6' O2P 238.8 240.1
O1P P O6' O3P 120.1 120.0
O2P P O6' O3P 241.3 239.9
O6' P O2P HOP2 57.4 180.0
O6' P O3P HOP3 301.2 299.9
P O6' C5' C4' 115.9 180.0
P O6' C5' H5'1 241.2 59.9
P O6' C5' H5'2 350.6 300.0
HOP2 O2P P O3P 300.2 59.9
HOP2 O2P P O6' 57.4 180.0
HOP3 O3P P O6' 301.2 299.9
C4' C5' O6' H5'1 234.7 120.1
C4' C5' O6' H5'2 125.3 240.0
O6' C5' C4' O5' 46.9 61.4
O6' C5' C4' C3' 167.2 177.2
O6' C5' C4' H4' 285.0 299.3
H5'1 C5' O6' H5'2 250.6 119.9
O6' C5' C4' H5'1 125.3 240.0
O6' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O5' C4' C5' C3' 239.6 244.2
O5' C4' C5' H4' 121.9 122.1
C5' C4' O5' C1' 111.2 143.4
C3' C4' C5' H4' 242.2 237.9
C5' C4' C3' O3' 159.0 86.7
C5' C4' C3' C2' 273.2 204.6
C5' C4' C3' H3' 38.6 322.5
O6' C5' H5'1 C4' 237.8 120.0
O6' C5' H5'1 H5'2 118.9 240.1
C4' C5' H5'1 H5'2 241.1 120.0
H5'1 C5' C4' O5' 281.6 181.5
H5'1 C5' C4' C3' 42.0 297.2
H5'1 C5' C4' H4' 159.7 59.4
O6' C5' H5'2 C4' 122.2 240.0
O6' C5' H5'2 H5'1 241.1 119.9
C4' C5' H5'2 H5'1 119.0 240.0
H5'2 C5' C4' O5' 172.1 301.5
H5'2 C5' C4' C3' 292.5 57.2
H5'2 C5' C4' H4' 50.2 179.4
N7A C1' O5' C4' 117.6 117.8
O5' C4' C5' H5'1 281.6 181.5
O5' C4' C5' H5'2 172.1 301.5
C5' C4' O5' C3' 127.1 119.0
C5' C4' O5' H4' 245.8 237.9
C3' C4' O5' H4' 118.7 118.9
O5' C4' C3' O3' 282.8 205.7
O5' C4' C3' C2' 37.1 323.6
O5' C4' C3' H3' 162.5 81.5
C4' O5' C1' C2' 348.0 358.3
C4' O5' C1' H1' 226.0 238.7
C3' C4' C5' H5'1 42.0 297.2
C3' C4' C5' H5'2 292.5 57.2
C5' C4' C3' O5' 236.1 241.0
C5' C4' C3' H4' 113.8 122.1
O5' C4' C3' H4' 237.6 241.1
C3' C4' O5' C1' 344.1 24.4
O3' C3' C4' C2' 245.8 242.1
O3' C3' C4' H3' 120.4 124.2
C4' C3' O3' HO3' 180.0 179.9
C2' C3' C4' H3' 234.6 242.1
C4' C3' C2' O2' 198.1 275.8
C4' C3' C2' C1' 315.7 34.1
C4' C3' C2' H2' 77.1 152.4
H4' C4' C5' H5'1 159.7 59.4
H4' C4' C5' H5'2 50.2 179.4
C5' C4' H4' O5' 120.0 122.1
C5' C4' H4' C3' 236.5 237.9
O5' C4' H4' C3' 116.5 115.7
H4' C4' O5' C1' 225.4 265.5
H4' C4' C3' O3' 45.2 324.6
H4' C4' C3' C2' 159.4 82.5
H4' C4' C3' H3' 284.8 200.4
N7A C1' O5' C2' 129.5 119.5
N7A C1' O5' H1' 251.6 239.1
C1' O5' C4' C3' 344.1 24.4
C1' O5' C4' H4' 225.4 265.5
C3' C2' C1' O5' 35.1 338.7
O2' C2' C1' O5' 145.7 96.9
O5' C1' C2' H2' 268.0 220.5
C2' C1' O5' H1' 122.1 119.6
O3' C3' C4' H4' 45.2 324.6
C4' C3' O3' C2' 109.1 111.6
C4' C3' O3' H3' 235.4 235.7
C2' C3' O3' H3' 126.3 124.2
O3' C3' C2' O2' 314.9 33.7
O3' C3' C2' C1' 72.5 152.0
O3' C3' C2' H2' 193.9 270.3
N7A C1' C2' C3' 263.7 219.1
C2' C3' C4' H4' 159.4 82.5
C4' C3' C2' O3' 243.2 242.1
C4' C3' C2' H3' 123.2 118.0
O5' C1' C2' C3' 35.1 338.7
O3' C3' C2' H3' 240.0 235.9
C2' C3' O3' HO3' 70.9 68.4
O2' C2' C3' C1' 242.4 241.7
O2' C2' C3' H2' 121.0 123.4
C3' C2' O2' HO2' 180.0 298.5
C1' C2' C3' H2' 238.6 241.7
C3' C2' C1' H1' 154.8 98.3
H3' C3' C4' H4' 284.8 200.4
C4' C3' H3' O3' 123.2 124.2
C4' C3' H3' C2' 244.1 248.4
O3' C3' H3' C2' 120.9 124.2
H3' C3' O3' HO3' 304.6 304.2
H3' C3' C2' O2' 74.9 157.8
H3' C3' C2' C1' 192.5 276.1
H3' C3' C2' H2' 313.9 34.4
HO3' O3' C3' C2' 70.9 68.4
HO3' O3' C3' H3' 304.6 304.2
N7A C1' C2' O2' 14.3 337.4
O5' C1' C2' O2' 145.7 96.9
O2' C2' C3' H3' 74.9 157.8
C3' C2' O2' C1' 110.1 112.9
C3' C2' O2' H2' 232.8 236.6
C1' C2' O2' H2' 122.7 123.7
O2' C2' C1' H1' 265.4 216.5
N7A C1' C2' O5' 228.6 240.5
N7A C1' C2' H1' 108.9 120.9
O5' C1' C2' H1' 240.3 240.4
C1' C2' C3' H3' 192.5 276.1
C3' C2' C1' O2' 249.4 241.7
C3' C2' C1' H2' 127.1 118.2
O2' C2' C1' H2' 237.7 236.5
C1' C2' O2' HO2' 69.9 185.7
H2' C2' C3' H3' 313.9 34.4
C3' C2' H2' O2' 118.0 123.5
C3' C2' H2' C1' 242.4 247.2
O2' C2' H2' C1' 124.5 123.7
H2' C2' O2' HO2' 307.2 62.0
H2' C2' C1' H1' 27.7 340.1
HO2' O2' C2' C1' 69.9 185.7
HO2' O2' C2' H2' 307.2 62.0
N7A C1' H1' O5' 123.8 120.9
N7A C1' H1' C2' 238.4 239.1
O5' C1' H1' C2' 114.6 118.2
H1' C1' C2' H2' 27.7 340.1