PDB Chemical Component AAM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AAM
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C8A |
N9A |
1.351 |
1.304 |
C8A |
N7A |
1.348 |
1.352 |
C8A |
H8A |
1.104 |
1.080 |
N9A |
C4A |
1.377 |
1.346 |
C4A |
C5A |
1.393 |
1.405 |
C4A |
N3A |
1.354 |
1.336 |
C5A |
N7A |
1.410 |
1.378 |
C5A |
C6A |
1.436 |
1.396 |
N7A |
C1' |
1.526 |
1.464 |
N3A |
C2A |
1.348 |
1.315 |
C2A |
N1A |
1.373 |
1.320 |
C2A |
H2A |
1.102 |
1.080 |
N1A |
C6A |
1.358 |
1.330 |
C6A |
N6A |
1.430 |
1.386 |
N6A |
HN61 |
1.020 |
0.970 |
N6A |
HN62 |
1.020 |
0.970 |
P |
O1P |
1.501 |
1.480 |
P |
O2P |
1.491 |
1.610 |
P |
O3P |
1.483 |
1.608 |
P |
O6' |
1.601 |
1.609 |
O2P |
HOP2 |
0.949 |
0.967 |
O3P |
HOP3 |
0.949 |
0.967 |
O6' |
C5' |
1.429 |
1.428 |
C5' |
C4' |
1.498 |
1.530 |
C5' |
H5'1 |
1.115 |
1.090 |
C5' |
H5'2 |
1.115 |
1.090 |
C4' |
O5' |
1.450 |
1.435 |
C4' |
C3' |
1.496 |
1.550 |
C4' |
H4' |
1.115 |
1.090 |
O5' |
C1' |
1.450 |
1.431 |
C3' |
O3' |
1.427 |
1.429 |
C3' |
C2' |
1.506 |
1.554 |
C3' |
H3' |
1.115 |
1.089 |
O3' |
HO3' |
0.950 |
0.966 |
C2' |
O2' |
1.439 |
1.429 |
C2' |
C1' |
1.535 |
1.543 |
C2' |
H2' |
1.116 |
1.090 |
O2' |
HO2' |
0.950 |
0.968 |
C1' |
H1' |
1.115 |
1.090 |
Bond Angles for AAM
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N9A |
C8A |
N7A |
115.0 |
110.1 |
N9A |
C8A |
H8A |
122.6 |
125.0 |
C8A |
N9A |
C4A |
106.0 |
109.8 |
N7A |
C8A |
H8A |
122.4 |
124.9 |
C8A |
N7A |
C5A |
102.1 |
107.1 |
C8A |
N7A |
C1' |
125.4 |
126.4 |
N9A |
C4A |
C5A |
106.4 |
106.8 |
N9A |
C4A |
N3A |
126.0 |
134.5 |
C5A |
C4A |
N3A |
127.6 |
118.7 |
C4A |
C5A |
N7A |
110.4 |
106.1 |
C4A |
C5A |
C6A |
116.9 |
118.6 |
C4A |
N3A |
C2A |
111.0 |
120.6 |
N7A |
C5A |
C6A |
132.6 |
135.3 |
C5A |
N7A |
C1' |
132.5 |
126.5 |
C5A |
C6A |
N1A |
116.9 |
118.6 |
C5A |
C6A |
N6A |
127.0 |
120.7 |
N7A |
C1' |
O5' |
119.2 |
109.8 |
N7A |
C1' |
C2' |
116.2 |
109.8 |
N7A |
C1' |
H1' |
94.8 |
109.8 |
N3A |
C2A |
N1A |
127.9 |
122.5 |
N3A |
C2A |
H2A |
115.0 |
118.8 |
N1A |
C2A |
H2A |
117.2 |
118.8 |
C2A |
N1A |
C6A |
119.7 |
121.1 |
N1A |
C6A |
N6A |
116.1 |
120.7 |
C6A |
N6A |
HN61 |
127.0 |
120.0 |
C6A |
N6A |
HN62 |
106.1 |
120.0 |
HN61 |
N6A |
HN62 |
106.1 |
120.0 |
O1P |
P |
O2P |
109.2 |
109.4 |
O1P |
P |
O3P |
109.8 |
109.5 |
O1P |
P |
O6' |
111.5 |
109.4 |
O2P |
P |
O3P |
109.4 |
109.5 |
O2P |
P |
O6' |
109.8 |
109.5 |
P |
O2P |
HOP2 |
109.2 |
106.8 |
O3P |
P |
O6' |
107.0 |
109.5 |
P |
O3P |
HOP3 |
109.8 |
106.8 |
P |
O6' |
C5' |
122.1 |
106.8 |
O6' |
C5' |
C4' |
107.4 |
109.5 |
O6' |
C5' |
H5'1 |
113.0 |
109.5 |
O6' |
C5' |
H5'2 |
113.0 |
109.4 |
C4' |
C5' |
H5'1 |
113.0 |
109.5 |
C4' |
C5' |
H5'2 |
113.0 |
109.5 |
C5' |
C4' |
O5' |
111.5 |
110.4 |
C5' |
C4' |
C3' |
116.7 |
110.3 |
C5' |
C4' |
H4' |
101.4 |
110.3 |
H5'1 |
C5' |
H5'2 |
97.4 |
109.4 |
O5' |
C4' |
C3' |
104.8 |
105.1 |
O5' |
C4' |
H4' |
114.1 |
110.3 |
C4' |
O5' |
C1' |
110.5 |
110.0 |
C3' |
C4' |
H4' |
108.6 |
110.3 |
C4' |
C3' |
O3' |
111.6 |
111.1 |
C4' |
C3' |
C2' |
100.1 |
100.9 |
C4' |
C3' |
H3' |
113.7 |
111.2 |
O5' |
C1' |
C2' |
102.0 |
107.6 |
O5' |
C1' |
H1' |
110.9 |
109.9 |
O3' |
C3' |
C2' |
108.1 |
111.1 |
O3' |
C3' |
H3' |
106.4 |
111.0 |
C3' |
O3' |
HO3' |
111.6 |
106.8 |
C2' |
C3' |
H3' |
116.8 |
111.1 |
C3' |
C2' |
O2' |
103.4 |
110.9 |
C3' |
C2' |
C1' |
102.6 |
102.2 |
C3' |
C2' |
H2' |
118.6 |
110.8 |
O2' |
C2' |
C1' |
112.9 |
111.0 |
O2' |
C2' |
H2' |
109.2 |
110.7 |
C2' |
O2' |
HO2' |
103.4 |
106.8 |
C1' |
C2' |
H2' |
110.0 |
111.0 |
C2' |
C1' |
H1' |
114.2 |
109.9 |
Torsion Angles for AAM
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N7A |
C8A |
N9A |
H8A |
180.0 |
180.0 |
N9A |
C8A |
N7A |
C5A |
2.6 |
359.7 |
N9A |
C8A |
N7A |
C1' |
185.3 |
180.0 |
C8A |
N9A |
C4A |
C5A |
358.9 |
0.3 |
C8A |
N9A |
C4A |
N3A |
181.3 |
180.0 |
N9A |
C8A |
N7A |
H8A |
180.0 |
180.0 |
N7A |
C8A |
N9A |
C4A |
359.0 |
0.0 |
C4A |
C5A |
N7A |
C8A |
356.7 |
0.4 |
C8A |
N7A |
C5A |
C6A |
179.9 |
179.5 |
C5A |
N7A |
C8A |
C1' |
177.3 |
179.7 |
C8A |
N7A |
C1' |
O5' |
196.2 |
336.3 |
C8A |
N7A |
C1' |
C2' |
319.0 |
94.5 |
C8A |
N7A |
C1' |
H1' |
79.0 |
215.4 |
N9A |
C8A |
H8A |
N7A |
180.0 |
180.1 |
H8A |
C8A |
N9A |
C4A |
178.9 |
180.0 |
H8A |
C8A |
N7A |
C5A |
182.7 |
179.8 |
H8A |
C8A |
N7A |
C1' |
5.4 |
0.1 |
C4A |
N9A |
C8A |
N7A |
359.0 |
0.0 |
C4A |
N9A |
C8A |
H8A |
178.9 |
180.0 |
C5A |
C4A |
N9A |
N3A |
177.6 |
180.3 |
N9A |
C4A |
C5A |
N7A |
2.8 |
359.6 |
N9A |
C4A |
C5A |
C6A |
180.2 |
180.4 |
N9A |
C4A |
N3A |
C2A |
179.0 |
180.0 |
C8A |
N7A |
C5A |
C4A |
356.7 |
0.4 |
N9A |
C4A |
C5A |
N3A |
182.4 |
179.8 |
C5A |
C4A |
N3A |
C2A |
1.9 |
359.7 |
N7A |
C5A |
C4A |
C6A |
182.6 |
179.2 |
C4A |
C5A |
N7A |
C1' |
173.8 |
180.1 |
C4A |
C5A |
C6A |
N1A |
0.2 |
359.4 |
C4A |
C5A |
C6A |
N6A |
181.4 |
179.8 |
N9A |
C4A |
N3A |
C5A |
177.1 |
180.3 |
N3A |
C4A |
C5A |
N7A |
180.4 |
179.8 |
N3A |
C4A |
C5A |
C6A |
357.8 |
0.6 |
C4A |
N3A |
C2A |
N1A |
0.4 |
360.0 |
C4A |
N3A |
C2A |
H2A |
180.4 |
180.0 |
C5A |
N7A |
C8A |
H8A |
182.7 |
179.8 |
C8A |
N7A |
C5A |
C1' |
183.0 |
180.3 |
N7A |
C5A |
C4A |
N3A |
180.4 |
179.8 |
C4A |
C5A |
N7A |
C6A |
176.9 |
181.0 |
N7A |
C5A |
C6A |
N1A |
176.9 |
180.5 |
N7A |
C5A |
C6A |
N6A |
358.1 |
0.8 |
C5A |
N7A |
C1' |
O5' |
19.8 |
156.6 |
C5A |
N7A |
C1' |
C2' |
142.5 |
274.8 |
C5A |
N7A |
C1' |
H1' |
262.6 |
35.7 |
C6A |
C5A |
C4A |
N3A |
357.8 |
0.6 |
C4A |
C5A |
C6A |
N7A |
183.3 |
179.0 |
C6A |
C5A |
N7A |
C1' |
356.9 |
359.2 |
C2A |
N1A |
C6A |
C5A |
1.7 |
0.3 |
N1A |
C6A |
C5A |
N6A |
178.8 |
179.7 |
C5A |
C6A |
N6A |
HN61 |
180.0 |
186.6 |
C5A |
C6A |
N6A |
HN62 |
54.7 |
6.2 |
C1' |
N7A |
C8A |
H8A |
5.4 |
0.1 |
C8A |
N7A |
C1' |
C5A |
176.4 |
179.7 |
C1' |
N7A |
C5A |
C6A |
356.9 |
359.2 |
C4' |
O5' |
C1' |
N7A |
117.6 |
117.8 |
O5' |
C1' |
N7A |
C2' |
237.2 |
241.8 |
O5' |
C1' |
N7A |
H1' |
117.2 |
120.9 |
C3' |
C2' |
C1' |
N7A |
263.7 |
219.1 |
O2' |
C2' |
C1' |
N7A |
14.3 |
337.4 |
N7A |
C1' |
C2' |
H2' |
136.6 |
100.9 |
C2' |
C1' |
N7A |
H1' |
240.0 |
239.1 |
N1A |
C2A |
N3A |
H2A |
180.0 |
180.0 |
N3A |
C2A |
N1A |
C6A |
357.8 |
360.0 |
C5A |
C6A |
N1A |
C2A |
1.7 |
0.3 |
N3A |
C2A |
N1A |
H2A |
180.0 |
180.0 |
C2A |
N1A |
C6A |
N6A |
180.7 |
180.0 |
N3A |
C2A |
H2A |
N1A |
180.0 |
180.0 |
H2A |
C2A |
N1A |
C6A |
177.8 |
179.9 |
C5A |
C6A |
N1A |
N6A |
181.1 |
180.3 |
C6A |
N1A |
C2A |
H2A |
177.8 |
179.9 |
N1A |
C6A |
N6A |
HN61 |
1.2 |
6.9 |
N1A |
C6A |
N6A |
HN62 |
235.9 |
186.6 |
C5A |
C6A |
N6A |
N1A |
178.8 |
179.7 |
HN61 |
N6A |
C6A |
HN62 |
125.3 |
180.3 |
C6A |
N6A |
HN61 |
HN62 |
234.7 |
179.7 |
C6A |
N6A |
HN62 |
HN61 |
137.3 |
180.3 |
O2P |
P |
O1P |
O3P |
119.9 |
120.0 |
O2P |
P |
O1P |
O6' |
238.4 |
240.1 |
O1P |
P |
O2P |
HOP2 |
180.0 |
299.9 |
O3P |
P |
O1P |
O6' |
118.5 |
120.0 |
O1P |
P |
O3P |
HOP3 |
180.0 |
180.0 |
O1P |
P |
O6' |
C5' |
43.4 |
60.1 |
O1P |
P |
O2P |
O3P |
239.8 |
240.0 |
O1P |
P |
O2P |
O6' |
122.6 |
119.9 |
O3P |
P |
O2P |
O6' |
242.8 |
239.9 |
O2P |
P |
O3P |
HOP3 |
60.1 |
60.0 |
O2P |
P |
O6' |
C5' |
164.6 |
180.0 |
O1P |
P |
O3P |
O2P |
119.9 |
120.0 |
O1P |
P |
O3P |
O6' |
238.8 |
240.0 |
O2P |
P |
O3P |
O6' |
119.0 |
120.1 |
O3P |
P |
O2P |
HOP2 |
300.2 |
59.9 |
O3P |
P |
O6' |
C5' |
283.2 |
300.0 |
O1P |
P |
O6' |
O2P |
238.8 |
240.1 |
O1P |
P |
O6' |
O3P |
120.1 |
120.0 |
O2P |
P |
O6' |
O3P |
241.3 |
239.9 |
O6' |
P |
O2P |
HOP2 |
57.4 |
180.0 |
O6' |
P |
O3P |
HOP3 |
301.2 |
299.9 |
P |
O6' |
C5' |
C4' |
115.9 |
180.0 |
P |
O6' |
C5' |
H5'1 |
241.2 |
59.9 |
P |
O6' |
C5' |
H5'2 |
350.6 |
300.0 |
HOP2 |
O2P |
P |
O3P |
300.2 |
59.9 |
HOP2 |
O2P |
P |
O6' |
57.4 |
180.0 |
HOP3 |
O3P |
P |
O6' |
301.2 |
299.9 |
C4' |
C5' |
O6' |
H5'1 |
234.7 |
120.1 |
C4' |
C5' |
O6' |
H5'2 |
125.3 |
240.0 |
O6' |
C5' |
C4' |
O5' |
46.9 |
61.4 |
O6' |
C5' |
C4' |
C3' |
167.2 |
177.2 |
O6' |
C5' |
C4' |
H4' |
285.0 |
299.3 |
H5'1 |
C5' |
O6' |
H5'2 |
250.6 |
119.9 |
O6' |
C5' |
C4' |
H5'1 |
125.3 |
240.0 |
O6' |
C5' |
C4' |
H5'2 |
234.7 |
120.0 |
H5'1 |
C5' |
C4' |
H5'2 |
109.5 |
240.0 |
O5' |
C4' |
C5' |
C3' |
239.6 |
244.2 |
O5' |
C4' |
C5' |
H4' |
121.9 |
122.1 |
C5' |
C4' |
O5' |
C1' |
111.2 |
143.4 |
C3' |
C4' |
C5' |
H4' |
242.2 |
237.9 |
C5' |
C4' |
C3' |
O3' |
159.0 |
86.7 |
C5' |
C4' |
C3' |
C2' |
273.2 |
204.6 |
C5' |
C4' |
C3' |
H3' |
38.6 |
322.5 |
O6' |
C5' |
H5'1 |
C4' |
237.8 |
120.0 |
O6' |
C5' |
H5'1 |
H5'2 |
118.9 |
240.1 |
C4' |
C5' |
H5'1 |
H5'2 |
241.1 |
120.0 |
H5'1 |
C5' |
C4' |
O5' |
281.6 |
181.5 |
H5'1 |
C5' |
C4' |
C3' |
42.0 |
297.2 |
H5'1 |
C5' |
C4' |
H4' |
159.7 |
59.4 |
O6' |
C5' |
H5'2 |
C4' |
122.2 |
240.0 |
O6' |
C5' |
H5'2 |
H5'1 |
241.1 |
119.9 |
C4' |
C5' |
H5'2 |
H5'1 |
119.0 |
240.0 |
H5'2 |
C5' |
C4' |
O5' |
172.1 |
301.5 |
H5'2 |
C5' |
C4' |
C3' |
292.5 |
57.2 |
H5'2 |
C5' |
C4' |
H4' |
50.2 |
179.4 |
N7A |
C1' |
O5' |
C4' |
117.6 |
117.8 |
O5' |
C4' |
C5' |
H5'1 |
281.6 |
181.5 |
O5' |
C4' |
C5' |
H5'2 |
172.1 |
301.5 |
C5' |
C4' |
O5' |
C3' |
127.1 |
119.0 |
C5' |
C4' |
O5' |
H4' |
245.8 |
237.9 |
C3' |
C4' |
O5' |
H4' |
118.7 |
118.9 |
O5' |
C4' |
C3' |
O3' |
282.8 |
205.7 |
O5' |
C4' |
C3' |
C2' |
37.1 |
323.6 |
O5' |
C4' |
C3' |
H3' |
162.5 |
81.5 |
C4' |
O5' |
C1' |
C2' |
348.0 |
358.3 |
C4' |
O5' |
C1' |
H1' |
226.0 |
238.7 |
C3' |
C4' |
C5' |
H5'1 |
42.0 |
297.2 |
C3' |
C4' |
C5' |
H5'2 |
292.5 |
57.2 |
C5' |
C4' |
C3' |
O5' |
236.1 |
241.0 |
C5' |
C4' |
C3' |
H4' |
113.8 |
122.1 |
O5' |
C4' |
C3' |
H4' |
237.6 |
241.1 |
C3' |
C4' |
O5' |
C1' |
344.1 |
24.4 |
O3' |
C3' |
C4' |
C2' |
245.8 |
242.1 |
O3' |
C3' |
C4' |
H3' |
120.4 |
124.2 |
C4' |
C3' |
O3' |
HO3' |
180.0 |
179.9 |
C2' |
C3' |
C4' |
H3' |
234.6 |
242.1 |
C4' |
C3' |
C2' |
O2' |
198.1 |
275.8 |
C4' |
C3' |
C2' |
C1' |
315.7 |
34.1 |
C4' |
C3' |
C2' |
H2' |
77.1 |
152.4 |
H4' |
C4' |
C5' |
H5'1 |
159.7 |
59.4 |
H4' |
C4' |
C5' |
H5'2 |
50.2 |
179.4 |
C5' |
C4' |
H4' |
O5' |
120.0 |
122.1 |
C5' |
C4' |
H4' |
C3' |
236.5 |
237.9 |
O5' |
C4' |
H4' |
C3' |
116.5 |
115.7 |
H4' |
C4' |
O5' |
C1' |
225.4 |
265.5 |
H4' |
C4' |
C3' |
O3' |
45.2 |
324.6 |
H4' |
C4' |
C3' |
C2' |
159.4 |
82.5 |
H4' |
C4' |
C3' |
H3' |
284.8 |
200.4 |
N7A |
C1' |
O5' |
C2' |
129.5 |
119.5 |
N7A |
C1' |
O5' |
H1' |
251.6 |
239.1 |
C1' |
O5' |
C4' |
C3' |
344.1 |
24.4 |
C1' |
O5' |
C4' |
H4' |
225.4 |
265.5 |
C3' |
C2' |
C1' |
O5' |
35.1 |
338.7 |
O2' |
C2' |
C1' |
O5' |
145.7 |
96.9 |
O5' |
C1' |
C2' |
H2' |
268.0 |
220.5 |
C2' |
C1' |
O5' |
H1' |
122.1 |
119.6 |
O3' |
C3' |
C4' |
H4' |
45.2 |
324.6 |
C4' |
C3' |
O3' |
C2' |
109.1 |
111.6 |
C4' |
C3' |
O3' |
H3' |
235.4 |
235.7 |
C2' |
C3' |
O3' |
H3' |
126.3 |
124.2 |
O3' |
C3' |
C2' |
O2' |
314.9 |
33.7 |
O3' |
C3' |
C2' |
C1' |
72.5 |
152.0 |
O3' |
C3' |
C2' |
H2' |
193.9 |
270.3 |
N7A |
C1' |
C2' |
C3' |
263.7 |
219.1 |
C2' |
C3' |
C4' |
H4' |
159.4 |
82.5 |
C4' |
C3' |
C2' |
O3' |
243.2 |
242.1 |
C4' |
C3' |
C2' |
H3' |
123.2 |
118.0 |
O5' |
C1' |
C2' |
C3' |
35.1 |
338.7 |
O3' |
C3' |
C2' |
H3' |
240.0 |
235.9 |
C2' |
C3' |
O3' |
HO3' |
70.9 |
68.4 |
O2' |
C2' |
C3' |
C1' |
242.4 |
241.7 |
O2' |
C2' |
C3' |
H2' |
121.0 |
123.4 |
C3' |
C2' |
O2' |
HO2' |
180.0 |
298.5 |
C1' |
C2' |
C3' |
H2' |
238.6 |
241.7 |
C3' |
C2' |
C1' |
H1' |
154.8 |
98.3 |
H3' |
C3' |
C4' |
H4' |
284.8 |
200.4 |
C4' |
C3' |
H3' |
O3' |
123.2 |
124.2 |
C4' |
C3' |
H3' |
C2' |
244.1 |
248.4 |
O3' |
C3' |
H3' |
C2' |
120.9 |
124.2 |
H3' |
C3' |
O3' |
HO3' |
304.6 |
304.2 |
H3' |
C3' |
C2' |
O2' |
74.9 |
157.8 |
H3' |
C3' |
C2' |
C1' |
192.5 |
276.1 |
H3' |
C3' |
C2' |
H2' |
313.9 |
34.4 |
HO3' |
O3' |
C3' |
C2' |
70.9 |
68.4 |
HO3' |
O3' |
C3' |
H3' |
304.6 |
304.2 |
N7A |
C1' |
C2' |
O2' |
14.3 |
337.4 |
O5' |
C1' |
C2' |
O2' |
145.7 |
96.9 |
O2' |
C2' |
C3' |
H3' |
74.9 |
157.8 |
C3' |
C2' |
O2' |
C1' |
110.1 |
112.9 |
C3' |
C2' |
O2' |
H2' |
232.8 |
236.6 |
C1' |
C2' |
O2' |
H2' |
122.7 |
123.7 |
O2' |
C2' |
C1' |
H1' |
265.4 |
216.5 |
N7A |
C1' |
C2' |
O5' |
228.6 |
240.5 |
N7A |
C1' |
C2' |
H1' |
108.9 |
120.9 |
O5' |
C1' |
C2' |
H1' |
240.3 |
240.4 |
C1' |
C2' |
C3' |
H3' |
192.5 |
276.1 |
C3' |
C2' |
C1' |
O2' |
249.4 |
241.7 |
C3' |
C2' |
C1' |
H2' |
127.1 |
118.2 |
O2' |
C2' |
C1' |
H2' |
237.7 |
236.5 |
C1' |
C2' |
O2' |
HO2' |
69.9 |
185.7 |
H2' |
C2' |
C3' |
H3' |
313.9 |
34.4 |
C3' |
C2' |
H2' |
O2' |
118.0 |
123.5 |
C3' |
C2' |
H2' |
C1' |
242.4 |
247.2 |
O2' |
C2' |
H2' |
C1' |
124.5 |
123.7 |
H2' |
C2' |
O2' |
HO2' |
307.2 |
62.0 |
H2' |
C2' |
C1' |
H1' |
27.7 |
340.1 |
HO2' |
O2' |
C2' |
C1' |
69.9 |
185.7 |
HO2' |
O2' |
C2' |
H2' |
307.2 |
62.0 |
N7A |
C1' |
H1' |
O5' |
123.8 |
120.9 |
N7A |
C1' |
H1' |
C2' |
238.4 |
239.1 |
O5' |
C1' |
H1' |
C2' |
114.6 |
118.2 |
H1' |
C1' |
C2' |
H2' |
27.7 |
340.1 |