PDB Chemical Component AAB

Ideal Model

Chemical Description

Name 2'-DEOXY-RIBOFURANOSE-5'-MONOPHOSPHATE
Synonyms ABASIC DEOXYRIBOSE
Formula C5 H11 O7 P
Formal charge 0
Molecular weight 214.110 g/mol
Component type DNA LINKING

Chemical features

Atom count 24
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms O1'
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranose
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3,5-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@H](O)[C@@H](CO[P](O)(O)=O)O1
SMILES (CACTVS) O[CH]1C[CH](O)[CH](CO[P](O)(O)=O)O1
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C5H11O7P/c6-3-1-5(7)12-4(3)2-11-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5+/m0/s1
InChIKey descriptor KKZFLSZAWCYPOC-VPENINKCSA-N

Status Information

Last modified 2020-06-17
Created 1999-07-08
Release status REL
Replaces B1P
Model PDB code 1A9G
Processing site RCSB