PDB Chemical Component AAA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AAA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C1A |
1.492 |
1.466 |
| C1 |
C2 |
1.410 |
1.400 |
| C1 |
C6 |
1.444 |
1.407 |
| C1A |
C1B |
1.516 |
1.508 |
| C1A |
O1B |
1.269 |
1.213 |
| C1B |
H1B1 |
1.116 |
1.091 |
| C1B |
H1B2 |
1.115 |
1.089 |
| C1B |
H1B3 |
1.115 |
1.089 |
| C2 |
C3 |
1.384 |
1.376 |
| C2 |
H2 |
1.104 |
1.080 |
| C3 |
C4 |
1.388 |
1.387 |
| C3 |
H3 |
1.103 |
1.080 |
| C4 |
C4A |
1.487 |
1.507 |
| C4 |
C5 |
1.397 |
1.379 |
| C4A |
H4A1 |
1.115 |
1.089 |
| C4A |
H4A2 |
1.115 |
1.090 |
| C4A |
H4A3 |
1.115 |
1.091 |
| C5 |
C6 |
1.450 |
1.390 |
| C5 |
H5 |
1.102 |
1.080 |
| C6 |
N7 |
1.428 |
1.386 |
| N7 |
C8 |
1.454 |
1.463 |
| N7 |
HN7 |
1.010 |
0.969 |
| C8 |
C8A |
1.543 |
1.507 |
| C8 |
C9 |
1.512 |
1.506 |
| C8 |
H8 |
1.000 |
1.090 |
| C8A |
N8B |
1.360 |
1.347 |
| C8A |
O8B |
1.237 |
1.212 |
| N8B |
HN81 |
0.996 |
0.970 |
| N8B |
HN82 |
1.003 |
0.970 |
| C9 |
C10 |
1.416 |
1.382 |
| C9 |
C14 |
1.344 |
1.383 |
| C10 |
BR1 |
1.875 |
1.891 |
| C10 |
C11 |
1.396 |
1.383 |
| C11 |
C12 |
1.388 |
1.382 |
| C11 |
H11 |
1.102 |
1.079 |
| C12 |
C13 |
1.393 |
1.382 |
| C12 |
H12 |
1.103 |
1.080 |
| C13 |
C14 |
1.417 |
1.384 |
| C13 |
H13 |
1.104 |
1.080 |
| C14 |
BR2 |
1.855 |
1.891 |
Bond Angles for AAA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1A |
C1 |
C2 |
118.6 |
120.3 |
| C1A |
C1 |
C6 |
123.2 |
120.2 |
| C1 |
C1A |
C1B |
119.1 |
119.9 |
| C1 |
C1A |
O1B |
123.7 |
120.0 |
| C2 |
C1 |
C6 |
118.2 |
119.6 |
| C1 |
C2 |
C3 |
123.5 |
119.9 |
| C1 |
C2 |
H2 |
119.2 |
120.1 |
| C1 |
C6 |
C5 |
116.4 |
119.5 |
| C1 |
C6 |
N7 |
121.7 |
120.3 |
| C1B |
C1A |
O1B |
117.1 |
120.0 |
| C1A |
C1B |
H1B1 |
119.1 |
109.4 |
| C1A |
C1B |
H1B2 |
108.8 |
109.5 |
| C1A |
C1B |
H1B3 |
108.8 |
109.4 |
| H1B1 |
C1B |
H1B2 |
108.7 |
109.5 |
| H1B1 |
C1B |
H1B3 |
108.7 |
109.5 |
| H1B2 |
C1B |
H1B3 |
101.3 |
109.5 |
| C3 |
C2 |
H2 |
117.3 |
120.1 |
| C2 |
C3 |
C4 |
119.8 |
120.4 |
| C2 |
C3 |
H3 |
119.9 |
119.8 |
| C4 |
C3 |
H3 |
120.3 |
119.8 |
| C3 |
C4 |
C4A |
120.4 |
119.7 |
| C3 |
C4 |
C5 |
119.2 |
120.5 |
| C4A |
C4 |
C5 |
120.4 |
119.8 |
| C4 |
C4A |
H4A1 |
120.4 |
109.5 |
| C4 |
C4A |
H4A2 |
108.2 |
109.5 |
| C4 |
C4A |
H4A3 |
108.2 |
109.5 |
| C4 |
C5 |
C6 |
122.9 |
120.1 |
| C4 |
C5 |
H5 |
116.6 |
120.0 |
| H4A1 |
C4A |
H4A2 |
108.3 |
109.5 |
| H4A1 |
C4A |
H4A3 |
108.3 |
109.5 |
| H4A2 |
C4A |
H4A3 |
101.7 |
109.4 |
| C6 |
C5 |
H5 |
120.5 |
119.9 |
| C5 |
C6 |
N7 |
121.9 |
120.2 |
| C6 |
N7 |
C8 |
125.8 |
120.0 |
| C6 |
N7 |
HN7 |
117.7 |
120.0 |
| C8 |
N7 |
HN7 |
116.4 |
120.0 |
| N7 |
C8 |
C8A |
113.1 |
109.4 |
| N7 |
C8 |
C9 |
112.2 |
109.5 |
| N7 |
C8 |
H8 |
112.1 |
109.5 |
| C8A |
C8 |
C9 |
113.1 |
109.4 |
| C8A |
C8 |
H8 |
104.5 |
109.5 |
| C8 |
C8A |
N8B |
122.1 |
120.0 |
| C8 |
C8A |
O8B |
117.6 |
120.0 |
| C9 |
C8 |
H8 |
100.9 |
109.4 |
| C8 |
C9 |
C10 |
119.8 |
120.1 |
| C8 |
C9 |
C14 |
123.3 |
120.0 |
| N8B |
C8A |
O8B |
120.1 |
120.0 |
| C8A |
N8B |
HN81 |
118.3 |
120.1 |
| C8A |
N8B |
HN82 |
122.3 |
120.0 |
| HN81 |
N8B |
HN82 |
119.4 |
120.0 |
| C10 |
C9 |
C14 |
116.9 |
119.9 |
| C9 |
C10 |
BR1 |
120.0 |
120.0 |
| C9 |
C10 |
C11 |
121.9 |
120.1 |
| C9 |
C14 |
C13 |
122.2 |
120.0 |
| C9 |
C14 |
BR2 |
118.9 |
120.0 |
| BR1 |
C10 |
C11 |
117.9 |
119.9 |
| C10 |
C11 |
C12 |
120.0 |
120.0 |
| C10 |
C11 |
H11 |
120.3 |
120.1 |
| C12 |
C11 |
H11 |
119.7 |
119.9 |
| C11 |
C12 |
C13 |
118.1 |
120.0 |
| C11 |
C12 |
H12 |
120.8 |
120.0 |
| C13 |
C12 |
H12 |
121.1 |
120.0 |
| C12 |
C13 |
C14 |
120.5 |
120.0 |
| C12 |
C13 |
H13 |
118.9 |
120.1 |
| C14 |
C13 |
H13 |
120.6 |
120.0 |
| C13 |
C14 |
BR2 |
118.9 |
120.0 |
Torsion Angles for AAA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C1A |
C6 |
179.6 |
180.2 |
| C1A |
C1 |
C2 |
C3 |
182.4 |
180.0 |
| C1A |
C1 |
C2 |
H2 |
2.4 |
360.0 |
| C1A |
C1 |
C6 |
C5 |
176.4 |
179.8 |
| C1A |
C1 |
C6 |
N7 |
357.1 |
0.2 |
| C1B |
C1A |
C1 |
O1B |
175.9 |
180.0 |
| C1 |
C1A |
C1B |
H1B1 |
180.0 |
180.0 |
| C1 |
C1A |
C1B |
H1B2 |
305.2 |
300.0 |
| C1 |
C1A |
C1B |
H1B3 |
54.7 |
60.1 |
| C1A |
C1 |
C2 |
C6 |
180.4 |
179.8 |
| C2 |
C1 |
C1A |
C1B |
359.1 |
354.3 |
| C2 |
C1 |
C1A |
O1B |
183.2 |
174.4 |
| C2 |
C1 |
C6 |
C5 |
356.8 |
359.6 |
| C2 |
C1 |
C6 |
N7 |
177.5 |
180.0 |
| C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
C4 |
359.8 |
360.0 |
| C1 |
C2 |
C3 |
H3 |
179.8 |
180.0 |
| C1A |
C1 |
C6 |
C2 |
179.6 |
180.2 |
| C6 |
C1 |
C1A |
C1B |
179.5 |
174.1 |
| C6 |
C1 |
C1A |
O1B |
3.6 |
354.2 |
| C6 |
C1 |
C2 |
C3 |
2.0 |
0.2 |
| C6 |
C1 |
C2 |
H2 |
182.0 |
180.2 |
| C4 |
C5 |
C6 |
C1 |
2.9 |
0.5 |
| C1 |
C6 |
C5 |
H5 |
182.9 |
180.2 |
| C5 |
C6 |
C1 |
N7 |
179.3 |
179.6 |
| C1 |
C6 |
N7 |
C8 |
185.0 |
187.0 |
| C1 |
C6 |
N7 |
HN7 |
0.9 |
6.9 |
| C1B |
C1A |
C1 |
C2 |
359.1 |
354.3 |
| C1B |
C1A |
C1 |
C6 |
179.5 |
174.1 |
| C1 |
C1A |
C1B |
O1B |
183.9 |
180.0 |
| H1B1 |
C1B |
C1A |
H1B2 |
234.8 |
240.0 |
| H1B1 |
C1B |
C1A |
H1B3 |
125.3 |
119.9 |
| H1B2 |
C1B |
C1A |
H1B3 |
250.5 |
239.9 |
| O1B |
C1A |
C1 |
C2 |
183.2 |
174.4 |
| O1B |
C1A |
C1 |
C6 |
3.6 |
354.2 |
| C1 |
C1A |
O1B |
C1B |
175.9 |
180.0 |
| O1B |
C1A |
C1B |
H1B1 |
356.2 |
360.0 |
| O1B |
C1A |
C1B |
H1B2 |
121.3 |
120.0 |
| O1B |
C1A |
C1B |
H1B3 |
230.9 |
240.0 |
| H1B1 |
C1B |
C1A |
O1B |
356.2 |
360.0 |
| C1A |
C1B |
H1B1 |
H1B2 |
125.2 |
120.0 |
| C1A |
C1B |
H1B1 |
H1B3 |
234.7 |
240.1 |
| H1B2 |
C1B |
H1B1 |
H1B3 |
109.4 |
120.1 |
| H1B2 |
C1B |
C1A |
O1B |
121.3 |
120.0 |
| C1A |
C1B |
H1B2 |
H1B1 |
228.9 |
240.0 |
| C1A |
C1B |
H1B2 |
H1B3 |
114.5 |
120.0 |
| H1B1 |
C1B |
H1B2 |
H1B3 |
245.6 |
240.0 |
| H1B3 |
C1B |
C1A |
O1B |
230.9 |
240.0 |
| C1A |
C1B |
H1B3 |
H1B1 |
131.2 |
119.9 |
| C1A |
C1B |
H1B3 |
H1B2 |
245.5 |
240.0 |
| H1B1 |
C1B |
H1B3 |
H1B2 |
114.4 |
120.0 |
| C3 |
C2 |
C1 |
C6 |
2.0 |
0.2 |
| C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
C4A |
180.3 |
180.0 |
| C2 |
C3 |
C4 |
C5 |
359.8 |
0.0 |
| H2 |
C2 |
C1 |
C6 |
182.0 |
180.2 |
| C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
| H2 |
C2 |
C3 |
C4 |
179.8 |
180.0 |
| H2 |
C2 |
C3 |
H3 |
359.8 |
0.0 |
| C4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
| C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
| C4A |
C4 |
C3 |
C5 |
180.5 |
180.0 |
| C3 |
C4 |
C4A |
H4A1 |
180.0 |
90.0 |
| C3 |
C4 |
C4A |
H4A2 |
305.3 |
210.1 |
| C3 |
C4 |
C4A |
H4A3 |
54.7 |
330.0 |
| C3 |
C4 |
C5 |
C6 |
358.7 |
359.7 |
| C3 |
C4 |
C5 |
H5 |
178.8 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
359.8 |
0.0 |
| C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
| H3 |
C3 |
C4 |
C4A |
0.3 |
0.0 |
| H3 |
C3 |
C4 |
C5 |
179.8 |
180.0 |
| C4A |
C4 |
C3 |
H3 |
0.3 |
0.0 |
| C3 |
C4 |
C4A |
C5 |
179.5 |
180.0 |
| C4A |
C4 |
C5 |
C6 |
178.3 |
179.7 |
| C4A |
C4 |
C5 |
H5 |
358.3 |
360.0 |
| H4A1 |
C4A |
C4 |
H4A2 |
234.7 |
239.9 |
| H4A1 |
C4A |
C4 |
H4A3 |
125.3 |
120.0 |
| H4A2 |
C4A |
C4 |
H4A3 |
250.6 |
240.1 |
| C1 |
C6 |
C5 |
C4 |
2.9 |
0.5 |
| C5 |
C4 |
C3 |
H3 |
179.8 |
180.0 |
| C3 |
C4 |
C5 |
C4A |
180.5 |
180.0 |
| C5 |
C4 |
C4A |
H4A1 |
0.5 |
270.0 |
| C5 |
C4 |
C4A |
H4A2 |
125.8 |
30.1 |
| C5 |
C4 |
C4A |
H4A3 |
235.2 |
150.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
179.8 |
| C4 |
C5 |
C6 |
N7 |
182.2 |
180.0 |
| H4A1 |
C4A |
C4 |
C5 |
0.5 |
270.0 |
| C4 |
C4A |
H4A1 |
H4A2 |
125.2 |
120.0 |
| C4 |
C4A |
H4A1 |
H4A3 |
234.8 |
240.0 |
| H4A2 |
C4A |
H4A1 |
H4A3 |
109.6 |
119.9 |
| H4A2 |
C4A |
C4 |
C5 |
125.8 |
30.1 |
| C4 |
C4A |
H4A2 |
H4A1 |
227.9 |
239.9 |
| C4 |
C4A |
H4A2 |
H4A3 |
113.8 |
120.0 |
| H4A1 |
C4A |
H4A2 |
H4A3 |
246.0 |
240.0 |
| H4A3 |
C4A |
C4 |
C5 |
235.2 |
150.0 |
| C4 |
C4A |
H4A3 |
H4A1 |
132.1 |
120.1 |
| C4 |
C4A |
H4A3 |
H4A2 |
246.2 |
240.1 |
| H4A1 |
C4A |
H4A3 |
H4A2 |
114.0 |
120.0 |
| C1 |
C6 |
C5 |
N7 |
180.7 |
180.4 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.2 |
| C5 |
C6 |
N7 |
C8 |
5.8 |
7.5 |
| C5 |
C6 |
N7 |
HN7 |
181.6 |
187.4 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
179.8 |
| H5 |
C5 |
C6 |
N7 |
2.2 |
359.8 |
| C1 |
C6 |
N7 |
C5 |
179.3 |
179.5 |
| N7 |
C6 |
C5 |
H5 |
2.2 |
359.8 |
| C8 |
N7 |
C6 |
HN7 |
184.2 |
180.1 |
| C6 |
N7 |
C8 |
C8A |
228.3 |
279.6 |
| C6 |
N7 |
C8 |
C9 |
98.9 |
159.7 |
| C6 |
N7 |
C8 |
H8 |
346.2 |
39.7 |
| C6 |
N7 |
C8 |
HN7 |
175.9 |
179.9 |
| C8A |
C8 |
N7 |
C9 |
129.4 |
120.0 |
| C8A |
C8 |
N7 |
H8 |
242.1 |
240.0 |
| N7 |
C8 |
C8A |
N8B |
127.5 |
351.0 |
| N7 |
C8 |
C8A |
O8B |
302.6 |
171.0 |
| C9 |
C8 |
N7 |
H8 |
112.7 |
120.0 |
| N7 |
C8 |
C9 |
C10 |
243.6 |
229.3 |
| N7 |
C8 |
C9 |
C14 |
61.1 |
49.0 |
| C6 |
N7 |
HN7 |
C8 |
183.8 |
180.1 |
| HN7 |
N7 |
C8 |
C8A |
52.4 |
99.7 |
| HN7 |
N7 |
C8 |
C9 |
283.0 |
339.7 |
| HN7 |
N7 |
C8 |
H8 |
170.3 |
219.7 |
| C8A |
C8 |
N7 |
HN7 |
52.4 |
99.7 |
| N7 |
C8 |
C8A |
C9 |
231.1 |
240.0 |
| N7 |
C8 |
C8A |
H8 |
122.2 |
120.0 |
| C9 |
C8 |
C8A |
H8 |
251.2 |
240.1 |
| C8A |
C8 |
C9 |
C10 |
114.1 |
109.3 |
| C8A |
C8 |
C9 |
C14 |
291.6 |
289.0 |
| N8B |
C8A |
C8 |
O8B |
184.9 |
180.0 |
| C8 |
C8A |
N8B |
HN81 |
219.2 |
193.1 |
| C8 |
C8A |
N8B |
HN82 |
38.7 |
13.1 |
| C9 |
C8 |
N7 |
HN7 |
283.0 |
339.7 |
| N7 |
C8 |
C9 |
C8A |
129.4 |
120.0 |
| N7 |
C8 |
C9 |
H8 |
240.5 |
240.0 |
| C8A |
C8 |
C9 |
H8 |
111.1 |
120.0 |
| C9 |
C8 |
C8A |
N8B |
256.5 |
111.0 |
| C9 |
C8 |
C8A |
O8B |
71.6 |
291.0 |
| C10 |
C9 |
C8 |
C14 |
182.5 |
180.2 |
| C8 |
C9 |
C10 |
BR1 |
0.2 |
360.0 |
| C8 |
C9 |
C10 |
C11 |
175.3 |
179.9 |
| C8 |
C9 |
C14 |
C13 |
178.7 |
179.8 |
| C8 |
C9 |
C14 |
BR2 |
0.6 |
0.2 |
| H8 |
C8 |
N7 |
HN7 |
170.3 |
219.7 |
| N7 |
C8 |
H8 |
C8A |
237.1 |
240.0 |
| N7 |
C8 |
H8 |
C9 |
119.5 |
120.0 |
| C8A |
C8 |
H8 |
C9 |
242.4 |
240.0 |
| H8 |
C8 |
C8A |
N8B |
5.3 |
230.9 |
| H8 |
C8 |
C8A |
O8B |
180.4 |
50.9 |
| H8 |
C8 |
C9 |
C10 |
3.0 |
349.3 |
| H8 |
C8 |
C9 |
C14 |
180.6 |
169.1 |
| N8B |
C8A |
C8 |
C9 |
256.5 |
111.0 |
| N8B |
C8A |
C8 |
H8 |
5.3 |
230.9 |
| C8 |
C8A |
N8B |
O8B |
175.0 |
180.0 |
| HN81 |
N8B |
C8A |
HN82 |
180.6 |
180.0 |
| O8B |
C8A |
C8 |
C9 |
71.6 |
291.0 |
| O8B |
C8A |
C8 |
H8 |
180.4 |
50.9 |
| C8 |
C8A |
O8B |
N8B |
184.8 |
180.0 |
| O8B |
C8A |
N8B |
HN81 |
44.3 |
13.1 |
| O8B |
C8A |
N8B |
HN82 |
223.7 |
193.1 |
| HN81 |
N8B |
C8A |
O8B |
44.3 |
13.1 |
| C8A |
N8B |
HN81 |
HN82 |
179.5 |
180.0 |
| HN82 |
N8B |
C8A |
O8B |
223.7 |
193.1 |
| C8A |
N8B |
HN82 |
HN81 |
180.6 |
180.0 |
| C10 |
C9 |
C8 |
H8 |
3.0 |
349.3 |
| C8 |
C9 |
C10 |
C14 |
177.7 |
179.8 |
| C10 |
C9 |
C14 |
C13 |
356.3 |
359.6 |
| C10 |
C9 |
C14 |
BR2 |
178.2 |
180.0 |
| BR1 |
C10 |
C9 |
C11 |
184.9 |
180.1 |
| C9 |
C10 |
C11 |
C12 |
5.9 |
0.1 |
| C9 |
C10 |
C11 |
H11 |
185.9 |
180.0 |
| C14 |
C9 |
C8 |
H8 |
180.6 |
169.1 |
| C8 |
C9 |
C14 |
C10 |
182.4 |
180.2 |
| C14 |
C9 |
C10 |
BR1 |
182.6 |
180.2 |
| C14 |
C9 |
C10 |
C11 |
357.7 |
0.2 |
| C12 |
C13 |
C14 |
C9 |
6.3 |
0.4 |
| C9 |
C14 |
C13 |
H13 |
186.3 |
180.3 |
| C13 |
C14 |
C9 |
BR2 |
178.1 |
179.6 |
| BR1 |
C10 |
C9 |
C14 |
182.6 |
180.2 |
| C9 |
C10 |
BR1 |
C11 |
175.3 |
179.9 |
| BR1 |
C10 |
C11 |
C12 |
181.1 |
180.0 |
| BR1 |
C10 |
C11 |
H11 |
1.1 |
359.9 |
| C11 |
C10 |
C9 |
C14 |
357.7 |
0.2 |
| C9 |
C10 |
C11 |
BR1 |
184.8 |
180.1 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.1 |
| C10 |
C11 |
C12 |
C13 |
356.8 |
359.9 |
| C10 |
C11 |
C12 |
H12 |
176.8 |
180.0 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
179.9 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
179.9 |
| C11 |
C12 |
C13 |
C14 |
357.4 |
359.8 |
| C11 |
C12 |
C13 |
H13 |
177.4 |
180.0 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.1 |
| H11 |
C11 |
C12 |
C13 |
176.7 |
180.0 |
| H11 |
C11 |
C12 |
H12 |
356.7 |
0.1 |
| C9 |
C14 |
C13 |
C12 |
6.3 |
0.4 |
| C13 |
C12 |
C11 |
H11 |
176.7 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.1 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
179.8 |
| C12 |
C13 |
C14 |
BR2 |
184.4 |
180.1 |
| H12 |
C12 |
C11 |
H11 |
356.7 |
0.1 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
179.9 |
| H12 |
C12 |
C13 |
C14 |
177.4 |
179.8 |
| H12 |
C12 |
C13 |
H13 |
357.4 |
359.9 |
| C9 |
C14 |
C13 |
BR2 |
181.9 |
180.4 |
| C14 |
C13 |
C12 |
H12 |
177.4 |
179.8 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.2 |
| H13 |
C13 |
C12 |
H12 |
357.4 |
359.9 |
| C12 |
C13 |
H13 |
C14 |
180.0 |
179.8 |
| H13 |
C13 |
C14 |
BR2 |
4.4 |
359.9 |
| C9 |
C14 |
BR2 |
C13 |
178.1 |
179.6 |
| BR2 |
C14 |
C13 |
H13 |
4.4 |
359.9 |