PDB Chemical Component AA8

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AA8

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C28 C16 1.523 1.530
C11 C12 1.510 1.508
C11 C10 1.521 1.530
C25 C8 1.502 1.507
C13 C12 1.331 1.328
C13 C14 1.482 1.471
C15 C14 1.346 1.328
C15 C16 1.509 1.507
C14 C27 1.505 1.507
C16 C17 1.497 1.506
C9 C8 1.353 1.329
C9 C10 1.517 1.506
C8 C7 1.491 1.471
O2 C5 1.433 1.429
C10 C26 1.524 1.530
C7 C6 1.335 1.329
C6 C5 1.515 1.506
O3 C17 1.220 1.208
C5 C4 1.524 1.530
C17 C18 1.506 1.508
C4 C3 1.534 1.530
C2 C3 1.527 1.529
C2 C1 1.517 1.507
O1 C1 1.249 1.208
C29 C18 1.529 1.530
C1 O1' 1.250 1.343
C18 C19 1.537 1.530
C31 C22 1.500 1.507
C19 C20 1.534 1.530
C19 O4 1.434 1.429
C20 C30 1.525 1.530
C20 C21 1.528 1.530
O6 C24 1.245 1.216
C22 C21 1.513 1.507
C22 C23 1.348 1.331
C24 C23 1.476 1.469
C24 O5 1.242 1.348
O5 H1 0.950 0.967
C23 H2 1.080 1.080
C31 H3 1.100 1.090
C31 H4 1.100 1.090
C31 H5 1.100 1.090
C21 H6 1.101 1.090
C21 H7 1.100 1.089
C20 H8 1.100 1.090
C30 H9 1.101 1.090
C30 H10 1.100 1.090
C30 H11 1.100 1.090
C19 H12 1.100 1.090
O4 H13 0.950 0.967
C18 H14 1.100 1.090
C29 H15 1.100 1.090
C29 H16 1.100 1.090
C29 H17 1.100 1.090
C16 H18 1.100 1.091
C28 H19 1.100 1.090
C28 H20 1.100 1.090
C28 H21 1.100 1.090
C15 H22 1.080 1.079
C27 H23 1.100 1.090
C27 H24 1.100 1.090
C27 H25 1.100 1.090
C13 H26 1.080 1.080
C12 H27 1.080 1.080
C11 H28 1.100 1.090
C11 H29 1.100 1.090
C10 H30 1.100 1.091
C26 H31 1.100 1.090
C26 H32 1.100 1.089
C26 H33 1.100 1.089
C9 H34 1.080 1.080
C25 H36 1.100 1.090
C25 H37 1.100 1.090
C25 H38 1.100 1.090
C7 H39 1.080 1.080
C6 H40 1.080 1.080
C5 H42 1.100 1.091
O2 H43 0.950 0.967
C4 H44 1.100 1.090
C4 H45 1.100 1.090
C3 H46 1.100 1.090
C2 H47 1.100 1.091
O1' H48 0.949 0.968
C3 H35 1.100 1.089
C2 H41 1.100 1.090

Bond Angles for AA8

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C28 C16 H18 109.3 109.5
C11 C12 H27 120.0 120.0
C11 C10 C26 110.4 109.5
C10 C11 H28 109.2 109.5
C10 C11 H29 109.2 109.5
C11 C10 H30 109.0 109.4
C25 C8 C7 121.3 120.0
C12 C13 H26 119.0 120.0
C13 C12 H27 120.0 120.0
C15 C14 C27 121.6 120.0
C14 C15 H22 118.4 120.0
C15 C16 H18 109.4 109.4
C14 C27 H23 109.5 109.5
C14 C27 H24 109.5 109.5
C14 C27 H25 109.5 109.5
C9 C8 C7 121.1 120.0
C8 C9 H34 118.1 120.0
C9 C10 H30 109.0 109.5
C8 C7 C6 125.8 120.0
C8 C7 H39 117.1 120.0
O2 C5 C4 108.6 109.5
O2 C5 H42 109.5 109.4
C26 C10 H30 108.9 109.5
C10 C26 H31 109.5 109.4
C10 C26 H32 109.4 109.5
C10 C26 H33 109.4 109.5
C7 C6 C5 114.3 120.0
C6 C7 H39 117.1 120.0
C7 C6 H40 122.9 119.9
C6 C5 C4 116.6 109.5
C5 C6 H40 122.8 120.0
C6 C5 H42 108.4 109.5
C5 C4 C3 112.1 109.5
C4 C5 H42 108.3 109.5
C5 C4 H44 108.8 109.5
C5 C4 H45 108.8 109.4
C17 C18 H14 108.5 109.4
C3 C4 H44 108.8 109.5
C3 C4 H45 108.8 109.5
C4 C3 H46 107.8 109.5
C4 C3 H35 107.8 109.5
C2 C3 H46 107.8 109.5
C2 C3 H35 107.8 109.5
C2 C1 O1' 121.4 120.0
C1 C2 H47 108.0 109.4
C1 C2 H41 108.0 109.4
O1 C1 O1' 121.5 120.0
C29 C18 H14 108.2 109.5
C1 O1' H48 109.5 117.0
C18 C19 H12 107.8 109.5
C31 C22 C21 118.7 120.0
C19 C20 H8 107.9 109.5
O4 C19 H12 109.2 109.5
C19 O4 H13 109.5 114.0
C30 C20 H8 108.0 109.5
C20 C30 H9 109.5 109.5
C20 C30 H10 109.5 109.5
C20 C30 H11 109.5 109.5
C20 C21 H6 109.1 109.5
C20 C21 H7 109.1 109.5
O6 C24 C23 121.5 120.0
O6 C24 O5 120.4 120.0
C22 C21 H6 109.1 109.5
C22 C21 H7 109.1 109.5
C22 C23 H2 118.7 120.0
O5 C24 C23 118.2 120.0
C24 C23 H2 118.7 120.0
C24 O5 H1 109.5 117.0
H3 C31 H4 109.5 109.4
H3 C31 H5 109.5 109.5
H4 C31 H5 109.5 109.5
H6 C21 H7 109.5 109.4
H9 C30 H10 109.5 109.5
H9 C30 H11 109.5 109.4
H10 C30 H11 109.4 109.5
H15 C29 H16 109.5 109.5
H15 C29 H17 109.5 109.5
H16 C29 H17 109.5 109.5
H19 C28 H20 109.5 109.5
H19 C28 H21 109.5 109.5
H20 C28 H21 109.4 109.5
H23 C27 H24 109.5 109.5
H23 C27 H25 109.5 109.5
H24 C27 H25 109.5 109.4
H28 C11 H29 109.5 109.4
H31 C26 H32 109.5 109.5
H31 C26 H33 109.5 109.5
H32 C26 H33 109.5 109.5
H36 C25 H37 109.5 109.5
H36 C25 H38 109.5 109.5
H37 C25 H38 109.5 109.4
H44 C4 H45 109.5 109.5
H46 C3 H35 109.5 109.5
H47 C2 H41 109.5 109.5

Torsion Angles for AA8

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 C16 C28 H18 240.5 240.0
C11 C12 C13 H26 0.5 0.1
C13 C12 C11 H27 180.0 180.0
C10 C11 C12 H27 46.6 305.0
C9 C10 C11 H30 240.2 240.1
C26 C10 C11 H30 119.6 120.0
C11 C10 C26 H31 180.0 180.0
C11 C10 C26 H32 300.0 300.0
C11 C10 C26 H33 60.0 60.1
H28 C11 C10 H29 119.7 120.0
C9 C8 C25 C7 181.0 180.0
C25 C8 C9 H34 359.2 354.9
C25 C8 C7 C6 355.5 5.3
C25 C8 C7 H39 175.5 185.2
C11 C12 C13 H27 180.0 180.0
C13 C14 C15 H22 0.7 4.6
C13 C14 C27 H23 180.0 273.8
C13 C14 C27 H24 300.0 33.8
C13 C14 C27 H25 60.0 153.8
C14 C15 C16 H18 14.6 5.0
C15 C14 C27 H23 0.6 93.9
C15 C14 C27 H24 120.6 213.9
C15 C14 C27 H25 240.6 333.8
C28 C16 C15 H18 119.4 120.0
C27 C14 C15 H22 180.1 184.5
H23 C27 C14 H24 240.0 240.0
H23 C27 C14 H25 120.0 120.1
H24 C27 C14 H25 240.0 240.1
C16 C17 C18 H14 323.1 330.0
C25 C8 C9 C7 179.0 180.0
C8 C9 C10 H30 9.1 5.2
C9 C8 C7 C6 174.4 185.3
C9 C8 C7 H39 354.4 5.2
C9 C10 C11 H28 65.4 65.1
C9 C10 C11 H29 305.7 305.1
C11 C10 C9 H30 119.7 119.9
C26 C10 C9 H30 241.2 239.9
C9 C10 C26 H31 58.5 60.0
C9 C10 C26 H32 178.5 180.0
C9 C10 C26 H33 298.5 300.1
C7 C8 C9 H34 180.2 174.9
C8 C7 C6 C5 180.6 180.0
C6 C7 C8 H39 180.0 180.1
C8 C7 C6 H40 0.6 359.9
C6 C5 O2 C4 234.5 240.0
O2 C5 C6 H40 118.3 60.1
C6 C5 O2 H42 116.4 120.0
O2 C5 C4 C3 66.2 65.0
C4 C5 O2 H42 241.9 240.0
O2 C5 C4 H44 186.6 185.0
O2 C5 C4 H45 305.8 305.0
C26 C10 C11 H28 304.8 305.0
C26 C10 C11 H29 185.0 185.0
C11 C10 C26 H30 240.4 240.0
C9 C10 C26 H30 118.9 120.0
H31 C26 C10 H32 240.0 240.0
H31 C26 C10 H33 120.0 119.9
H32 C26 C10 H33 240.0 239.9
C8 C7 C6 H39 180.0 179.9
C7 C6 C5 C4 177.9 119.9
C5 C6 C7 H40 180.0 180.1
C7 C6 C5 H42 55.5 359.9
O2 C5 C6 C4 120.4 120.0
O2 C5 C6 H42 242.8 240.0
C5 C6 C7 H39 0.6 0.1
C7 C6 C5 H40 180.0 179.9
C6 C5 C4 C3 184.8 185.0
C4 C5 C6 H42 122.5 120.0
C6 C5 C4 H44 305.2 305.0
C6 C5 C4 H45 64.4 65.0
O3 C17 C18 H14 143.6 150.0
O2 C5 C4 H42 118.9 120.0
C4 C5 C6 H40 357.9 300.0
C6 C5 C4 H42 237.5 240.0
C3 C4 C5 H44 239.6 240.0
C3 C4 C5 H45 120.4 120.0
C5 C4 C3 H46 95.9 300.0
C5 C4 C3 H35 214.0 60.0
H44 C4 C5 H45 240.8 240.0
C29 C18 C17 H14 116.9 120.0
C17 C18 C19 H12 303.2 305.1
C3 C4 C5 H42 307.3 305.0
C5 C4 C3 H44 120.4 120.0
C5 C4 C3 H45 239.6 240.0
C2 C3 C4 H46 239.1 240.0
C2 C3 C4 H35 120.9 120.0
H44 C4 C3 H45 119.2 120.0
H46 C3 C4 H35 241.9 240.0
C2 C3 C4 H44 214.6 60.0
C2 C3 C4 H45 95.3 300.0
C4 C3 C2 H46 120.9 120.0
C4 C3 C2 H35 239.1 240.0
H46 C3 C2 H35 118.1 120.0
C1 C2 C3 H46 59.1 60.0
C1 C2 C3 H35 300.9 300.0
O1 C1 C2 O1' 179.7 180.0
C2 C1 O1' H48 179.7 180.1
H47 C2 C1 H41 118.3 119.9
C2 C1 O1 O1' 180.3 180.0
O1 C1 C2 H47 63.5 240.0
O1 C1 C2 H41 305.1 120.0
O1 C1 O1' H48 360.0 0.1
C17 C18 C29 H14 242.9 240.1
C29 C18 C19 H12 64.3 65.1
O1' C1 C2 H47 243.7 60.0
O1' C1 C2 H41 125.4 300.0
C18 C19 C20 H8 308.4 304.9
O4 C19 C18 H12 241.5 240.0
C18 C19 O4 H13 180.0 300.0
C31 C22 C21 H6 303.4 35.0
C31 C22 C21 H7 183.8 155.0
C31 C22 C23 H2 181.8 187.2
C30 C20 C19 H8 118.7 120.0
C19 C20 C30 H9 180.0 55.3
C19 C20 C30 H10 300.0 175.3
C19 C20 C30 H11 60.0 295.3
C19 C20 C21 H6 182.8 55.0
C19 C20 C21 H7 302.4 295.0
C18 C19 O4 H12 117.7 120.0
O4 C19 C20 H8 186.3 184.9
C19 C20 C30 H8 241.4 240.0
C30 C20 C21 H6 307.1 175.0
C30 C20 C21 H7 66.7 55.0
H9 C30 C20 H10 240.0 240.0
H9 C30 C20 H11 120.0 120.0
H10 C30 C20 H11 240.1 240.0
C22 C21 C20 H6 239.8 120.0
C22 C21 C20 H7 120.2 240.0
H6 C21 C20 H7 240.4 119.9
O5 C24 O6 C23 180.5 180.3
O6 C24 C23 H2 174.9 175.8
O6 C24 O5 H1 0.0 360.0
C20 C21 C22 H6 120.2 240.0
C20 C21 C22 H7 239.8 120.0
C21 C22 C23 H2 0.8 7.2
H6 C21 C22 H7 119.6 240.0
C24 C23 C22 H2 180.0 180.0
O6 C24 C23 O5 180.5 180.3
C22 C23 C24 H2 180.0 180.0
C23 C24 O5 H1 180.5 180.3
O6 C24 O5 C23 179.5 179.7
O5 C24 C23 H2 354.3 355.5
H1 O5 C24 C23 180.5 180.3
H3 C31 C22 C21 180.0 95.4
H4 C31 H3 H5 120.0 119.9
H4 C31 C22 C21 300.0 215.3
H3 C31 H4 H5 240.0 240.0
H5 C31 C22 C21 60.0 335.4
H3 C31 H5 H4 120.0 119.9
C20 C21 H6 H7 119.3 240.0
C22 C21 H6 H7 240.7 120.0
C20 C21 H7 H6 240.6 120.0
C22 C21 H7 H6 119.3 240.0
H8 C20 C30 H9 298.6 175.2
H8 C20 C30 H10 58.6 295.3
H8 C20 C30 H11 178.6 55.3
H8 C20 C21 H6 64.6 295.0
H8 C20 C21 H7 184.2 175.0
H9 C30 C20 H8 298.6 175.2
C20 C30 H9 H10 120.0 120.0
C20 C30 H9 H11 240.0 240.0
H10 C30 H9 H11 120.0 120.0
H10 C30 C20 H8 58.6 295.3
C20 C30 H10 H9 240.0 240.0
C20 C30 H10 H11 120.0 120.0
H9 C30 H10 H11 240.0 240.0
H11 C30 C20 H8 178.6 55.3
C20 C30 H11 H9 120.0 120.0
C20 C30 H11 H10 240.0 240.0
H9 C30 H11 H10 120.0 120.0
H12 C19 C20 H8 68.3 64.9
H12 C19 O4 H13 62.3 180.0
H13 O4 C19 H12 62.3 180.0
H14 C18 C19 H12 183.1 185.1
H15 C29 C18 H14 297.1 304.9
H16 C29 H15 H17 120.0 120.0
H16 C29 C18 H14 57.1 64.9
H15 C29 H16 H17 240.0 240.0
H17 C29 C18 H14 177.1 184.9
H15 C29 H17 H16 120.0 120.0
H19 C28 C16 H18 299.5 180.0
H20 C28 H19 H21 120.0 120.1
H20 C28 C16 H18 59.5 300.0
H19 C28 H20 H21 240.0 240.0
H21 C28 C16 H18 179.5 60.0
H19 C28 H21 H20 120.0 120.1
H22 C15 C14 C27 180.1 184.5
H22 C15 C16 H18 194.6 184.9
C14 C27 H23 H24 120.0 120.0
C14 C27 H23 H25 240.0 240.0
H24 C27 H23 H25 120.0 120.0
C14 C27 H24 H23 240.0 240.0
C14 C27 H24 H25 120.0 120.0
H23 C27 H24 H25 240.0 240.0
C14 C27 H25 H23 120.0 120.0
C14 C27 H25 H24 240.0 240.0
H23 C27 H25 H24 120.0 120.0
H26 C13 C12 H27 180.4 180.1
H27 C12 C13 H26 180.4 180.1
H28 C11 C12 H27 166.7 65.0
H28 C11 C10 C26 304.8 305.0
C10 C11 H28 H29 240.5 240.0
H28 C11 C10 H30 185.1 185.0
H29 C11 C12 H27 286.5 185.0
H29 C11 C10 C26 185.0 185.0
C10 C11 H29 H28 119.5 120.0
H29 C11 C10 H30 65.4 65.0
C11 C10 H30 C26 120.5 120.0
H30 C10 C11 H28 185.1 185.0
H30 C10 C11 H29 65.4 65.0
H30 C10 C26 H31 299.6 300.0
H30 C10 C26 H32 59.6 59.9
H30 C10 C26 H33 179.6 180.0
H31 C26 C10 H30 299.6 300.0
C10 C26 H31 H32 120.0 120.0
C10 C26 H31 H33 240.0 240.1
H32 C26 H31 H33 120.0 120.1
H32 C26 C10 H30 59.6 59.9
C10 C26 H32 H31 240.0 240.1
C10 C26 H32 H33 120.0 120.0
H31 C26 H32 H33 240.0 240.0
H33 C26 C10 H30 179.6 180.0
C10 C26 H33 H31 120.0 119.9
C10 C26 H33 H32 240.0 240.0
H31 C26 H33 H32 120.0 120.1
H34 C9 C8 C7 180.2 174.9
H34 C9 C10 H30 189.1 185.1
H36 C25 C8 C7 358.9 270.0
H37 C25 H36 H38 120.0 120.0
H37 C25 C8 C7 119.0 30.0
H36 C25 H37 H38 240.0 240.0
H38 C25 C8 C7 238.9 150.0
H36 C25 H38 H37 120.0 120.0
C8 C7 H39 C6 180.0 180.1
H39 C7 C6 C5 0.6 0.1
H39 C7 C6 H40 180.6 180.0
C7 C6 H40 C5 180.0 180.1
H40 C6 C7 H39 180.6 180.0
H40 C6 C5 C4 357.9 300.0
H40 C6 C5 H42 235.5 180.0
O2 C5 H42 C4 241.8 240.0
C6 C5 H42 C4 127.3 120.0
H42 C5 C6 H40 235.5 180.0
H42 C5 C4 C3 307.3 305.0
H42 C5 C4 H44 67.7 65.0
H42 C5 C4 H45 186.9 185.0
H43 O2 C5 C4 305.5 60.0
H43 O2 C5 H42 63.6 180.0
C5 C4 H44 C3 237.6 240.0
H44 C4 C5 H42 67.7 65.0
C5 C4 H44 H45 118.8 120.0
C3 C4 H44 H45 241.2 240.0
H44 C4 C3 H46 335.5 180.0
H44 C4 C3 H35 93.6 300.0
C5 C4 H45 C3 122.4 120.0
H45 C4 C5 H42 186.9 185.0
C5 C4 H45 H44 241.2 240.0
C3 C4 H45 H44 118.8 120.0
H45 C4 C3 H46 216.3 60.0
H45 C4 C3 H35 334.4 180.0
H46 C3 C4 H44 335.5 180.0
H46 C3 C4 H45 216.3 60.0
C4 C3 H46 H35 117.1 120.0
C2 C3 H46 H35 242.9 239.9
H47 C2 C3 H46 179.9 180.0
H47 C2 C3 H35 61.8 59.9
H47 C2 C1 O1' 243.7 60.0
C1 C2 H47 H41 242.6 240.1
H35 C3 C4 H44 93.6 300.0
H35 C3 C4 H45 334.4 180.0
C4 C3 H35 H46 242.9 240.0
C2 C3 H35 H46 117.1 120.0
H41 C2 C3 H46 298.3 300.1
H41 C2 C3 H35 180.1 180.0
H41 C2 C1 O1' 125.4 300.0
C1 C2 H41 H47 117.4 119.9