PDB Chemical Component A9U

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A9U

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N1 1.448 1.347
C1 C2 1.527 1.475
C1 OAB 1.185 1.217
O1 C12 1.399 1.358
O1 CAS 1.399 1.429
C2 C3 1.316 1.395
C2 C8 1.522 1.402
C3 C4 1.531 1.383
N3 C4 1.403 1.383
N3 C5 1.434 1.368
C4 C6 1.310 1.409
N4 C5 1.283 1.312
N4 C6 1.491 1.347
C5 C9 1.527 1.477
C6 C7 1.528 1.402
C7 C8 1.316 1.361
C9 C10 1.528 1.397
C9 C14 1.318 1.396
C10 C11 1.318 1.377
C11 C12 1.528 1.390
C12 C13 1.318 1.389
C13 C14 1.529 1.378
C16 C17 1.531 1.530
C16 NBH 1.384 1.468
C17 C18 1.425 1.532
C18 C19 1.421 1.532
C18 CAS 1.432 1.529
C19 C20 1.526 1.530
C20 NBH 1.381 1.469
C21 NBH   1.468
C22 C23   1.383
C22 C21   1.507
C22 C27   1.382
C23 C24   1.382
C23 H23   1.080
C24 C25   1.382
C24 H24   1.081
C25 C26   1.382
C25 H25   1.081
C26 C27   1.384
C26 H26   1.079
C21 H21   1.090
C21 H22   1.090
C27 H27   1.079
N1 H11N 1.000 0.970
N1 H12N 1.000 0.970
CAS HAS1 1.100 1.090
CAS HAS2 1.101 1.090
C3 H3 1.080 1.080
C8 H8 1.080 1.080
N3 HA 1.000 0.970
C7 H7 1.080 1.079
C10 H10 1.080 1.080
C14 H14 1.080 1.080
C11 H11 1.080 1.081
C13 H13 1.080 1.080
C16 H161 1.100 1.090
C16 H162 1.101 1.091
C17 H171 1.100 1.090
C17 H172 1.100 1.091
C18 H18 1.100 1.089
C19 H191 1.101 1.090
C19 H192 1.100 1.090
C20 H201 1.100 1.090
C20 H202 1.100 1.090

Bond Angles for A9U

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C2 120.0 120.1
N1 C1 OAB 119.9 120.0
C1 N1 H11N 120.0 119.9
C1 N1 H12N 120.0 120.1
C2 C1 OAB 120.1 120.0
C1 C2 C3 120.2 120.0
C1 C2 C8 119.5 119.9
C12 O1 CAS 120.7 117.0
O1 C12 C11 119.9 119.9
O1 C12 C13 120.2 119.9
O1 CAS C18 109.2 109.5
O1 CAS HAS1 109.5 109.5
O1 CAS HAS2 109.5 109.5
C3 C2 C8 120.3 120.1
C2 C3 C4 119.9 119.6
C2 C3 H3 120.0 120.2
C2 C8 C7 119.8 120.6
C2 C8 H8 120.1 119.7
C3 C4 N3 132.5 133.8
C3 C4 C6 119.7 120.0
C4 C3 H3 120.1 120.2
C4 N3 C5 108.2 107.0
N3 C4 C6 107.7 106.1
C4 N3 HA 125.9 126.5
N3 C5 N4 107.8 109.8
N3 C5 C9 126.9 125.1
C5 N3 HA 125.9 126.5
C4 C6 N4 107.9 107.3
C4 C6 C7 120.3 119.6
C5 N4 C6 108.3 109.8
N4 C5 C9 125.2 125.1
N4 C6 C7 131.8 133.1
C5 C9 C10 119.6 120.1
C5 C9 C14 120.4 120.1
C6 C7 C8 120.0 120.1
C6 C7 H7 119.9 119.9
C7 C8 H8 120.1 119.7
C8 C7 H7 120.0 120.0
C10 C9 C14 120.0 119.8
C9 C10 C11 120.1 119.9
C9 C10 H10 120.0 120.0
C9 C14 C13 119.9 120.0
C9 C14 H14 120.1 120.0
C10 C11 C12 120.0 120.1
C11 C10 H10 120.0 120.1
C10 C11 H11 120.0 120.0
C11 C12 C13 119.9 120.1
C12 C11 H11 120.0 119.9
C12 C13 C14 120.2 120.1
C12 C13 H13 119.9 119.9
C13 C14 H14 120.1 120.0
C14 C13 H13 119.9 120.0
C16 C17 H171 108.8 109.6
C16 C17 H172 108.8 109.5
C20 NBH C16 111.1 111.1
NBH C16 H161 109.4 109.5
NBH C16 H162 109.4 109.5
C17 C18 CAS 110.3 109.5
C17 C18 H18 108.3 109.6
C18 C19 H191 108.9 109.5
C18 C19 H192 108.9 109.5
C18 CAS HAS1 109.5 109.5
C18 CAS HAS2 109.5 109.5
CAS C18 H18 108.2 109.5
C19 C20 NBH 109.6 109.6
C19 C20 H201 109.4 109.4
C19 C20 H202 109.4 109.5
NBH C20 H201 109.4 109.4
NBH C20 H202 109.4 109.5
C23 C22 C21   119.9
C23 C22 C27   120.0
C22 C23 C24   120.0
C22 C23 H23   120.0
C21 C22 C27   120.1
C22 C21 H21   109.5
C22 C21 H22   109.4
C22 C27 C26   120.0
C22 C27 H27   120.0
C24 C23 H23   120.0
C23 C24 C25   120.0
C23 C24 H24   120.0
C25 C24 H24   120.0
C24 C25 C26   120.0
C24 C25 H25   120.0
C26 C25 H25   120.0
C25 C26 C27   119.9
C25 C26 H26   120.1
C27 C26 H26   120.0
C26 C27 H27   120.0
H21 C21 H22   109.5
H11N N1 H12N 119.9 120.0
HAS1 CAS HAS2 109.4 109.4
H161 C16 H162 109.5 109.4
H171 C17 H172 109.4 109.4
H191 C19 H192 109.4 109.6
H201 C20 H202 109.5 109.5

Torsion Angles for A9U

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 N1 OAB 179.8 180.4
N1 C1 C2 C3 333.1 180.0
N1 C1 C2 C8 153.3 359.7
H11N N1 C1 H12N 180.0 180.0
N1 C1 C2 OAB 180.2 179.6
C2 C1 N1 H11N 179.8 0.0
C2 C1 N1 H12N 359.8 180.0
C3 C2 C1 C8 179.8 180.3
C1 C2 C3 C4 180.1 180.0
C1 C2 C3 H3 0.2 359.9
C1 C2 C8 C7 179.8 179.8
C1 C2 C8 H8 359.8 0.0
N1 C1 OAB C2 179.8 180.4
OAB C1 N1 H11N 0.0 179.7
OAB C1 N1 H12N 180.0 359.7
OAB C1 C2 C3 152.9 0.3
OAB C1 C2 C8 333.1 180.0
C12 O1 CAS C18 174.0 180.0
C12 O1 CAS HAS1 293.9 300.1
C12 O1 CAS HAS2 54.0 59.9
C10 C11 C12 O1 178.6 179.9
C11 C12 O1 C13 181.6 180.0
O1 C12 C11 H11 358.6 360.0
O1 C12 C13 C14 181.4 179.7
O1 C12 C13 H13 1.4 0.1
CAS O1 C12 C11 112.1 180.0
CAS O1 C12 C13 290.5 360.0
C17 C18 CAS O1 351.5 65.3
C18 CAS O1 HAS1 240.0 239.9
C18 CAS O1 HAS2 120.0 120.1
O1 CAS C18 H18 233.1 305.1
HAS1 CAS O1 HAS2 239.9 240.1
C3 C2 C1 OAB 152.9 0.3
C1 C2 C3 C8 180.2 179.7
C3 C2 C8 C7 360.0 359.4
C3 C2 C8 H8 180.0 179.7
C2 C3 C4 N3 180.1 180.0
C2 C3 C4 C6 0.2 360.0
C4 C3 C2 H3 180.0 180.0
C8 C2 C1 OAB 333.1 180.0
C1 C2 C8 C3 179.8 180.3
C8 C2 C3 C4 359.9 0.3
C8 C2 C3 H3 180.0 180.3
C6 C7 C8 C2 360.0 0.5
C7 C8 C2 H8 180.0 179.7
C2 C8 C7 H7 180.0 180.3
C4 C3 C2 C8 359.9 0.3
C2 C3 C4 H3 180.0 180.0
C3 C4 N3 C5 180.9 180.0
N3 C4 C3 C6 179.9 180.0
C3 C4 N3 HA 0.9 359.9
C3 C4 C6 N4 179.9 180.0
C3 C4 C6 C7 359.8 360.0
C3 C4 N3 C6 180.1 180.0
N3 C4 C3 H3 0.0 0.1
C4 N3 C5 N4 358.6 359.9
C4 N3 C5 C9 181.4 180.0
C5 N3 C4 HA 180.0 180.1
N3 C4 C6 N4 0.0 360.0
N3 C4 C6 C7 179.8 180.0
C5 N3 C4 C6 0.8 0.0
C4 N3 C5 HA 180.0 179.9
N3 C5 N4 C6 1.4 0.1
N4 C5 N3 C9 177.2 180.0
N3 C5 C9 C10 192.4 179.9
N3 C5 C9 C14 13.8 359.7
C3 C4 C6 N3 179.9 180.0
C6 C4 C3 H3 180.2 180.0
C6 C4 N3 C5 0.8 0.0
C6 C4 N3 HA 180.8 179.9
C5 N4 C6 C4 359.1 360.0
N4 C6 C4 C7 180.2 180.0
C4 C6 C7 C8 0.2 359.8
C4 C6 C7 H7 180.2 180.0
N3 C5 N4 C9 182.7 180.0
N4 C5 N3 HA 178.6 180.1
C4 C6 N4 C5 359.1 360.0
C5 N4 C6 C7 179.3 180.0
N4 C5 C9 C10 15.6 360.0
N4 C5 C9 C14 197.0 179.8
C4 C6 N4 C7 179.8 179.9
C6 N4 C5 C9 178.6 180.0
N4 C6 C7 C8 180.0 179.7
N4 C6 C7 H7 360.0 360.0
N3 C5 C9 N4 176.8 180.0
C9 C5 N3 HA 1.4 0.1
C9 C5 N4 C6 178.6 180.0
C10 C9 C5 C14 178.6 180.2
C5 C9 C10 C11 180.9 180.0
C5 C9 C10 H10 0.9 0.1
C5 C9 C14 C13 179.1 179.6
C5 C9 C14 H14 359.2 0.0
C2 C8 C7 C6 360.0 0.5
C4 C6 C7 N4 180.2 180.1
C6 C7 C8 H8 180.0 180.3
C8 C7 C6 H7 180.0 179.7
C2 C8 C7 H8 180.0 180.3
C6 C7 C8 H7 180.0 180.3
C5 C9 C10 C14 181.4 179.8
C10 C9 C14 C13 0.5 359.4
C10 C9 C14 H14 180.6 179.8
C9 C10 C11 C12 0.2 0.1
C11 C10 C9 H10 180.0 179.9
C9 C10 C11 H11 180.2 180.1
C5 C9 C14 C10 178.6 180.2
C14 C9 C10 C11 359.5 0.2
C14 C9 C10 H10 179.5 180.3
C12 C13 C14 C9 359.8 0.6
C13 C14 C9 H14 180.0 179.6
C9 C14 C13 H13 179.8 180.2
O1 C12 C11 C10 178.6 179.9
C11 C10 C9 C14 359.5 0.2
C9 C10 C11 H10 180.0 180.1
C10 C11 C12 C13 0.2 360.0
C12 C11 C10 H11 180.0 180.0
C11 C12 O1 CAS 112.1 180.0
O1 C12 C11 C13 178.4 180.0
C12 C11 C10 H10 180.1 180.0
C10 C11 C12 H11 180.0 180.0
C11 C12 C13 C14 359.8 359.7
C11 C12 C13 H13 179.8 180.1
C13 C12 O1 CAS 290.5 360.0
O1 C12 C13 C11 181.6 180.0
C9 C14 C13 C12 359.8 0.6
C13 C12 C11 H11 180.2 180.0
C12 C13 C14 H14 179.7 180.3
C14 C13 C12 H13 180.0 179.6
C9 C14 C13 H14 180.0 180.4
C12 C13 C14 H13 180.0 180.4
C20 NBH C16 C17 60.7 61.8
C16 C17 C18 CAS 173.1 177.5
C16 C17 C18 H18 291.4 297.7
H171 C17 C16 H172 240.9 120.1
NBH C16 C17 H171 65.8 180.8
NBH C16 C17 H172 184.9 60.8
C19 C20 NBH C16 298.1 298.2
C16 NBH C20 H201 178.1 178.2
C16 NBH C20 H202 58.1 58.3
H161 C16 NBH H162 119.9 119.9
O1 CAS C18 C17 351.5 65.3
C17 C18 C19 H191 69.1 182.4
C17 C18 C19 H192 188.4 62.3
C17 C18 CAS HAS1 231.6 305.3
C17 C18 CAS HAS2 111.5 185.4
CAS C18 C17 H18 241.7 239.8
O1 CAS C18 C19 114.7 185.0
C18 C19 C20 NBH 56.8 59.2
C18 C19 C20 H201 176.8 179.2
C18 C19 C20 H202 296.9 299.1
H191 C19 C18 H192 240.7 120.1
O1 CAS C18 HAS1 120.0 120.0
O1 CAS C18 HAS2 240.0 239.9
C17 C18 CAS H18 118.4 120.2
CAS C18 C19 H191 306.4 62.5
CAS C18 C19 H192 65.7 302.4
HAS1 CAS C18 HAS2 120.1 119.9
NBH C20 C19 H201 240.0 240.0
NBH C20 C19 H202 120.0 120.1
H201 C20 C19 H202 240.0 240.0
C20 NBH C16 H161 300.7 301.7
C20 NBH C16 H162 180.7 181.8
C19 C20 NBH H201 120.0 120.0
C19 C20 NBH H202 240.0 240.0
H201 C20 NBH H202 120.0 120.0
C21 NBH C16 H161   177.6
C21 NBH C16 H162   57.7
C21 NBH C20 H201   302.3
C21 NBH C20 H202   182.3
C21 C22 C23 C27   180.3
C23 C22 C21 H21   330.0
C23 C22 C21 H22   210.0
C23 C22 C27 C26   0.6
C23 C22 C27 H27   180.0
C24 C23 C22 H23   180.1
C22 C23 C24 C25   359.9
C22 C23 C24 H24   179.9
C23 C22 C21 C27   179.7
C21 C22 C23 C24   180.0
C21 C22 C23 H23   359.9
C21 C22 C27 C26   180.3
C21 C22 C27 H27   359.7
H21 C21 C22 H22   120.0
C23 C22 C27 C21   180.3
C27 C22 C23 C24   359.8
C27 C22 C23 H23   179.7
C27 C22 C21 H21   150.3
C27 C22 C21 H22   30.3
C25 C26 C27 C22   359.3
C22 C27 C26 H26   179.7
C26 C27 C22 H27   180.6
C24 C23 C22 C21   180.0
C24 C23 C22 C27   359.8
C22 C23 C24 H23   179.9
C25 C24 C23 H24   180.0
C23 C24 C25 C26   0.0
C23 C24 C25 H25   180.0
H23 C23 C22 C21   359.9
H23 C23 C22 C27   179.7
C22 C23 H23 C24   180.1
H23 C23 C24 C25   180.0
H23 C23 C24 H24   0.1
C25 C24 C23 H23   180.0
C23 C24 C25 H24   180.0
C26 C25 C24 H25   180.0
C24 C25 C26 C27   0.4
C24 C25 C26 H26   180.0
H24 C24 C23 H23   0.1
C23 C24 H24 C25   180.0
H24 C24 C25 C26   180.0
H24 C24 C25 H25   360.0
C22 C27 C26 C25   359.3
C26 C25 C24 H24   180.0
C24 C25 C26 H25   180.0
C27 C26 C25 H26   180.4
C25 C26 C27 H27   180.0
H25 C25 C24 H24   360.0
C24 C25 H25 C26   180.0
H25 C25 C26 C27   180.4
H25 C25 C26 H26   0.0
C22 C27 C26 H27   179.4
C27 C26 C25 H25   180.4
C25 C26 C27 H26   179.6
H26 C26 C25 H25   0.0
C25 C26 H26 C27   180.4
H26 C26 C27 H27   0.3
H21 C21 C22 C27   150.3
C22 C21 H21 H22   240.1
H22 C21 C22 C27   30.3
C22 C21 H22 H21   120.0
C22 C27 H27 C26   180.6
H27 C27 C26 H26   0.3
H11N N1 C1 C2 179.8 0.0
H11N N1 C1 OAB 0.0 179.7
C1 N1 H11N H12N 180.0 180.0
H12N N1 C1 C2 359.8 180.0
H12N N1 C1 OAB 180.0 359.7
C1 N1 H12N H11N 180.0 180.0
O1 CAS HAS1 C18 240.2 240.0
O1 CAS HAS1 HAS2 120.1 119.9
C18 CAS HAS1 HAS2 239.9 240.0
HAS1 CAS C18 H18 113.2 185.1
O1 CAS HAS2 C18 119.8 120.1
O1 CAS HAS2 HAS1 239.9 240.1
C18 CAS HAS2 HAS1 120.1 120.0
HAS2 CAS C18 H18 353.1 65.2
H3 C3 C2 C8 180.0 180.3
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 N3 0.0 0.1
H3 C3 C4 C6 180.2 180.0
C2 C8 H8 C7 180.0 179.7
H8 C8 C7 H7 360.0 360.0
C4 N3 HA C5 180.0 180.2
HA N3 C4 C6 180.8 179.9
HA N3 C5 N4 178.6 180.1
HA N3 C5 C9 1.4 0.1
C6 C7 H7 C8 180.0 179.7
H7 C7 C8 H8 360.0 360.0
H10 C10 C9 C14 179.5 180.3
C9 C10 H10 C11 180.0 179.9
H10 C10 C11 C12 180.1 180.0
H10 C10 C11 H11 0.1 360.0
C9 C14 H14 C13 180.0 179.6
H14 C14 C13 H13 359.8 359.9
C10 C11 H11 C12 180.0 180.0
H11 C11 C10 H10 0.1 360.0
H11 C11 C12 C13 180.2 180.0
C12 C13 H13 C14 180.0 179.6
H13 C13 C14 H14 359.8 359.9
H161 C16 C17 H171 185.8 300.9
H161 C16 C17 H172 305.0 180.8
NBH C16 H161 H162 240.1 240.0
H162 C16 C17 H171 305.7 60.8
H162 C16 C17 H172 64.9 300.8
NBH C16 H162 H161 119.9 120.0
C16 C17 H171 H172 118.7 239.9
H171 C17 C18 CAS 52.6 297.6
H171 C17 C18 H18 171.0 57.7
C16 C17 H172 H171 241.3 120.1
H172 C17 C18 CAS 293.5 57.5
H172 C17 C18 H18 51.8 177.7
C17 C18 H18 CAS 240.4 239.8
H18 C18 C19 H191 188.0 302.4
H18 C18 C19 H192 307.3 182.3
H18 C18 CAS HAS1 113.2 185.1
H18 C18 CAS HAS2 353.1 65.2
C18 C19 H191 H192 118.9 239.9
H191 C19 C20 NBH 296.5 179.1
H191 C19 C20 H201 56.5 299.1
H191 C19 C20 H202 176.5 59.0
C18 C19 H192 H191 241.0 120.1
H192 C19 C20 NBH 177.2 299.3
H192 C19 C20 H201 297.2 59.2
H192 C19 C20 H202 57.2 179.2
H201 C20 NBH C16 178.1 178.2
C19 C20 H201 NBH 239.9 239.9
C19 C20 H201 H202 120.0 120.0
NBH C20 H201 H202 240.1 240.0
H202 C20 NBH C16 58.1 58.3
C19 C20 H202 NBH 120.1 120.1
C19 C20 H202 H201 240.0 240.0
NBH C20 H202 H201 119.9 119.9