PDB Chemical Component A9T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A9T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 N1 1.328 1.348
C1 C2 1.536 1.476
C1 OAB 1.230 1.215
O1 C12 1.366 1.358
O1 CAS 1.461 1.429
C2 C3 1.394 1.391
C2 C8 1.392 1.401
C3 C4 1.393 1.395
N3 C4 1.331 1.356
N3 C5 1.336 1.310
C4 C6 1.386 1.409
N4 C5 1.337 1.370
N4 C6 1.332 1.379
C5 C9 1.399 1.478
C6 C7 1.394 1.389
C7 C8 1.391 1.365
C9 C10 1.393 1.396
C9 C14 1.394 1.397
C10 C11 1.392 1.378
C11 C12 1.393 1.389
C12 C13 1.392 1.389
C13 C14 1.393 1.378
C16 C17 1.528 1.530
C16 NBG 1.484 1.469
C17 C18 1.513 1.531
C18 C19 1.527 1.531
C18 CAS 1.535 1.530
C19 C20 1.532 1.530
C20 NBG 1.485 1.469
C21 NBG   1.468
C22 C23   1.383
C22 C21   1.507
C22 C27   1.383
C23 C24   1.383
C23 H23   1.079
C24 C25   1.384
C24 H24   1.080
C25 C26   1.383
C25 CL1   1.735
C26 C27   1.383
C26 H26   1.080
C21 H21   1.090
C21 H22   1.090
C27 H27   1.079
N1 H11N 1.000 0.970
N1 H12N 0.999 0.970
CAS HAS1 1.100 1.090
CAS HAS2 1.100 1.090
C3 H3 1.080 1.080
C8 H8 1.080 1.079
N4 H4 1.000 0.970
C7 H7 1.080 1.080
C10 H10 1.080 1.079
C14 H14 1.080 1.080
C11 H11 1.080 1.080
C13 H13 1.080 1.080
C16 H161 1.100 1.090
C16 H162 1.100 1.089
C17 H171 1.100 1.090
C17 H172 1.100 1.090
C18 H18 1.100 1.090
C19 H191 1.100 1.090
C19 H192 1.100 1.090
C20 H201 1.100 1.090
C20 H202 1.100 1.090

Bond Angles for A9T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C2 115.0 119.9
N1 C1 OAB 123.5 120.0
C1 N1 H11N 120.0 120.1
C1 N1 H12N 120.0 119.9
C2 C1 OAB 121.5 120.0
C1 C2 C3 119.9 119.9
C1 C2 C8 120.4 119.9
C12 O1 CAS 118.0 117.0
O1 C12 C11 118.7 119.9
O1 C12 C13 121.6 119.9
O1 CAS C18 98.5 109.5
O1 CAS HAS1 112.2 109.4
O1 CAS HAS2 112.1 109.5
C3 C2 C8 119.7 120.2
C2 C3 C4 120.3 119.6
C2 C3 H3 119.9 120.3
C2 C8 C7 119.9 120.4
C2 C8 H8 120.0 119.8
C3 C4 N3 132.9 133.4
C3 C4 C6 119.9 119.4
C4 C3 H3 119.9 120.1
C4 N3 C5 108.6 109.6
N3 C4 C6 107.2 107.2
N3 C5 N4 108.4 109.8
N3 C5 C9 125.5 125.1
C4 C6 N4 107.0 106.1
C4 C6 C7 120.0 120.2
C5 N4 C6 108.7 107.3
N4 C5 C9 126.0 125.1
C5 N4 H4 125.7 126.3
N4 C6 C7 133.0 133.7
C6 N4 H4 125.6 126.4
C5 C9 C10 120.6 120.1
C5 C9 C14 120.0 120.1
C6 C7 C8 120.2 120.2
C6 C7 H7 119.9 119.9
C7 C8 H8 120.0 119.8
C8 C7 H7 119.9 119.9
C10 C9 C14 119.4 119.8
C9 C10 C11 120.0 119.9
C9 C10 H10 120.0 120.0
C9 C14 C13 120.5 119.9
C9 C14 H14 119.7 120.0
C10 C11 C12 120.5 120.1
C11 C10 H10 120.0 120.1
C10 C11 H11 119.7 120.0
C11 C12 C13 119.5 120.2
C12 C11 H11 119.8 119.9
C12 C13 C14 120.0 120.1
C12 C13 H13 120.0 120.0
C13 C14 H14 119.8 120.1
C14 C13 H13 120.0 119.9
C16 C17 H171 109.1 109.5
C16 C17 H172 109.1 109.5
C20 NBG C16 106.8 111.2
NBG C16 H161 109.6 109.4
NBG C16 H162 109.6 109.5
C17 C18 CAS 112.5 109.5
C17 C18 H18 106.8 109.6
C18 C19 H191 109.2 109.5
C18 C19 H192 109.2 109.6
C18 CAS HAS1 112.1 109.5
C18 CAS HAS2 112.2 109.5
CAS C18 H18 106.5 109.5
C19 C20 NBG 108.5 109.5
C19 C20 H201 109.7 109.5
C19 C20 H202 109.7 109.5
NBG C20 H201 109.7 109.5
NBG C20 H202 109.7 109.5
C23 C22 C21   120.0
C23 C22 C27   120.0
C22 C23 C24   120.0
C22 C23 H23   120.0
C21 C22 C27   120.0
C22 C21 H21   109.4
C22 C21 H22   109.5
C22 C27 C26   120.0
C22 C27 H27   120.0
C24 C23 H23   120.0
C23 C24 C25   120.0
C23 C24 H24   120.0
C25 C24 H24   120.1
C24 C25 C26   120.0
C24 C25 CL1   120.0
C26 C25 CL1   120.0
C25 C26 C27   120.0
C25 C26 H26   120.0
C27 C26 H26   120.0
C26 C27 H27   120.0
H21 C21 H22   109.5
H11N N1 H12N 120.0 120.0
HAS1 CAS HAS2 109.5 109.5
H161 C16 H162 109.5 109.5
H171 C17 H172 109.5 109.5
H191 C19 H192 109.5 109.4
H201 C20 H202 109.5 109.4

Torsion Angles for A9T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 N1 OAB 179.1 180.3
N1 C1 C2 C3 359.2 180.0
N1 C1 C2 C8 179.5 359.7
H11N N1 C1 H12N 180.0 180.0
N1 C1 C2 OAB 180.9 179.7
C2 C1 N1 H11N 179.1 0.1
C2 C1 N1 H12N 359.1 180.0
C3 C2 C1 C8 179.7 180.3
C1 C2 C3 C4 179.9 179.9
C1 C2 C3 H3 359.9 359.9
C1 C2 C8 C7 180.2 179.7
C1 C2 C8 H8 0.2 0.0
N1 C1 OAB C2 179.0 180.3
OAB C1 N1 H11N 0.0 179.7
OAB C1 N1 H12N 180.0 359.7
OAB C1 C2 C3 178.3 0.3
OAB C1 C2 C8 358.5 180.0
C12 O1 CAS C18 181.6 180.0
C12 O1 CAS HAS1 299.8 300.0
C12 O1 CAS HAS2 63.4 60.0
C10 C11 C12 O1 177.9 180.0
C11 C12 O1 C13 184.2 180.0
O1 C12 C11 H11 357.9 0.0
O1 C12 C13 C14 181.1 179.7
O1 C12 C13 H13 1.1 359.9
CAS O1 C12 C11 163.2 180.0
CAS O1 C12 C13 339.0 0.0
C17 C18 CAS O1 304.2 65.3
C18 CAS O1 HAS1 241.8 240.0
C18 CAS O1 HAS2 118.2 120.0
O1 CAS C18 H18 187.5 305.1
HAS1 CAS O1 HAS2 236.4 240.0
C3 C2 C1 OAB 178.3 0.3
C1 C2 C3 C8 180.3 179.7
C3 C2 C8 C7 0.4 359.4
C3 C2 C8 H8 180.4 179.7
C2 C3 C4 N3 181.0 180.0
C2 C3 C4 C6 0.2 0.0
C4 C3 C2 H3 180.0 180.1
C8 C2 C1 OAB 358.5 180.0
C1 C2 C8 C3 179.7 180.3
C8 C2 C3 C4 359.7 0.3
C8 C2 C3 H3 179.7 180.2
C6 C7 C8 C2 359.6 0.6
C7 C8 C2 H8 180.0 179.7
C2 C8 C7 H7 179.6 180.2
C4 C3 C2 C8 359.7 0.3
C2 C3 C4 H3 180.0 179.9
C3 C4 N3 C5 180.9 180.0
N3 C4 C3 C6 180.8 180.0
C3 C4 C6 N4 179.9 180.0
C3 C4 C6 C7 359.8 0.0
C3 C4 N3 C6 179.3 180.0
N3 C4 C3 H3 1.0 0.1
C4 N3 C5 N4 358.0 0.1
C4 N3 C5 C9 180.2 179.9
N3 C4 C6 N4 359.3 360.0
N3 C4 C6 C7 179.2 180.0
C5 N3 C4 C6 1.7 360.0
N3 C5 N4 C6 1.5 359.9
N4 C5 N3 C9 177.8 180.1
N3 C5 N4 H4 181.5 180.0
N3 C5 C9 C10 183.7 0.1
N3 C5 C9 C14 5.5 179.7
C3 C4 C6 N3 180.6 180.0
C6 C4 C3 H3 180.2 180.1
C6 C4 N3 C5 1.7 360.0
C5 N4 C6 C4 359.5 0.0
N4 C6 C4 C7 180.1 179.9
C4 C6 N4 H4 179.5 180.0
C4 C6 C7 C8 0.3 359.7
C4 C6 C7 H7 180.3 180.0
N3 C5 N4 C9 182.2 179.9
C4 C6 N4 C5 359.5 0.0
C5 N4 C6 C7 179.7 180.0
C6 N4 C5 H4 180.0 180.0
N4 C5 C9 C10 6.3 180.0
N4 C5 C9 C14 188.2 359.6
C4 C6 N4 C7 179.8 180.1
C6 N4 C5 C9 179.3 180.1
C5 N4 C6 H4 180.0 180.0
N4 C6 C7 C8 180.1 179.7
N4 C6 C7 H7 0.2 0.1
N3 C5 C9 N4 177.4 180.1
C9 C5 N4 C6 179.3 180.1
C9 C5 N4 H4 359.3 0.1
C10 C9 C5 C14 178.1 180.4
C5 C9 C10 C11 179.7 180.0
C5 C9 C10 H10 359.7 359.8
C5 C9 C14 C13 179.2 179.8
C5 C9 C14 H14 359.1 0.1
C2 C8 C7 C6 359.6 0.6
C4 C6 C7 N4 180.2 179.9
C7 C6 N4 H4 359.7 359.9
C6 C7 C8 H8 179.6 180.3
C8 C7 C6 H7 180.0 179.6
C2 C8 C7 H8 180.0 180.3
C6 C7 C8 H7 180.0 180.4
C5 C9 C10 C14 181.9 179.6
C10 C9 C14 C13 1.0 359.4
C10 C9 C14 H14 181.0 179.7
C9 C10 C11 C12 0.7 360.0
C11 C10 C9 H10 180.0 180.1
C9 C10 C11 H11 180.7 179.9
C5 C9 C14 C10 178.1 180.4
C14 C9 C10 C11 357.8 0.3
C14 C9 C10 H10 177.8 180.2
C12 C13 C14 C9 1.6 0.5
C13 C14 C9 H14 180.0 179.7
C9 C14 C13 H13 181.7 180.3
O1 C12 C11 C10 177.9 180.0
C11 C10 C9 C14 357.8 0.3
C9 C10 C11 H10 180.0 179.9
C10 C11 C12 C13 2.0 360.0
C12 C11 C10 H11 180.0 180.0
C11 C12 O1 CAS 163.2 180.0
O1 C12 C11 C13 175.9 180.0
C12 C11 C10 H10 180.7 180.1
C10 C11 C12 H11 180.0 180.0
C11 C12 C13 C14 356.9 359.8
C11 C12 C13 H13 176.9 180.0
C13 C12 O1 CAS 339.0 0.0
O1 C12 C13 C11 184.2 180.0
C9 C14 C13 C12 1.6 0.5
C13 C12 C11 H11 182.0 180.0
C12 C13 C14 H14 181.7 180.2
C14 C13 C12 H13 180.0 179.8
C9 C14 C13 H14 180.0 180.3
C12 C13 C14 H13 180.0 180.2
C20 NBG C16 C17 67.0 61.7
C16 C17 C18 CAS 180.0 177.5
C16 C17 C18 H18 296.6 297.7
H171 C17 C16 H172 240.4 120.0
NBG C16 C17 H171 60.1 180.9
NBG C16 C17 H172 179.7 60.8
C19 C20 NBG C16 293.0 298.3
C16 NBG C20 H201 173.1 178.2
C16 NBG C20 H202 52.8 58.3
H161 C16 NBG H162 120.2 119.9
O1 CAS C18 C17 304.2 65.3
C17 C18 C19 H191 67.9 182.3
C17 C18 C19 H192 187.6 62.3
C17 C18 CAS HAS1 186.0 305.4
C17 C18 CAS HAS2 62.4 185.4
CAS C18 C17 H18 243.5 239.9
O1 CAS C18 C19 70.4 185.0
C18 C19 C20 NBG 60.1 59.2
C18 C19 C20 H201 180.0 179.2
C18 C19 C20 H202 300.3 299.2
H191 C19 C18 H192 240.3 120.0
O1 CAS C18 HAS1 118.2 120.0
O1 CAS C18 HAS2 241.8 240.0
C17 C18 CAS H18 116.7 120.2
CAS C18 C19 H191 300.6 62.5
CAS C18 C19 H192 60.2 302.5
HAS1 CAS C18 HAS2 123.6 120.0
NBG C20 C19 H201 240.1 240.0
NBG C20 C19 H202 119.9 120.0
H201 C20 C19 H202 239.7 240.0
C20 NBG C16 H161 307.1 301.7
C20 NBG C16 H162 186.9 181.8
C19 C20 NBG H201 119.8 120.1
C19 C20 NBG H202 240.2 240.0
H201 C20 NBG H202 120.3 119.9
C21 NBG C16 H161   177.6
C21 NBG C16 H162   57.7
C21 NBG C20 H201   302.3
C21 NBG C20 H202   182.4
C21 C22 C23 C27   180.4
C23 C22 C21 H21   329.9
C23 C22 C21 H22   210.0
C23 C22 C27 C26   0.6
C23 C22 C27 H27   180.0
C24 C23 C22 H23   179.9
C22 C23 C24 C25   0.1
C22 C23 C24 H24   180.0
C23 C22 C21 C27   179.6
C21 C22 C23 C24   180.0
C21 C22 C23 H23   0.1
C21 C22 C27 C26   180.2
C21 C22 C27 H27   359.6
H21 C21 C22 H22   120.0
C23 C22 C27 C21   180.4
C27 C22 C23 C24   359.6
C27 C22 C23 H23   179.7
C27 C22 C21 H21   150.3
C27 C22 C21 H22   30.4
C25 C26 C27 C22   359.5
C22 C27 C26 H26   179.7
C26 C27 C22 H27   180.6
C24 C23 C22 C21   180.0
C24 C23 C22 C27   359.6
C22 C23 C24 H23   180.1
C25 C24 C23 H24   180.1
C23 C24 C25 C26   360.0
C23 C24 C25 CL1   180.0
H23 C23 C22 C21   0.1
H23 C23 C22 C27   179.7
C22 C23 H23 C24   179.9
H23 C23 C24 C25   180.0
H23 C23 C24 H24   359.9
C25 C24 C23 H23   180.0
C23 C24 C25 H24   179.9
C26 C25 C24 CL1   180.0
C24 C25 C26 C27   0.2
C24 C25 C26 H26   180.0
H24 C24 C23 H23   359.9
C23 C24 H24 C25   180.1
H24 C24 C25 C26   180.1
H24 C24 C25 CL1   0.0
C22 C27 C26 C25   359.5
C26 C25 C24 H24   180.1
C24 C25 C26 CL1   180.0
C27 C26 C25 H26   180.3
C25 C26 C27 H27   180.1
CL1 C25 C24 H24   0.0
C24 C25 CL1 C26   180.0
CL1 C25 C26 C27   180.3
CL1 C25 C26 H26   0.0
C22 C27 C26 H27   179.4
C27 C26 C25 CL1   180.3
C25 C26 C27 H26   179.7
H26 C26 C25 CL1   0.0
C25 C26 H26 C27   180.3
H26 C26 C27 H27   0.3
H21 C21 C22 C27   150.3
C22 C21 H21 H22   240.1
H22 C21 C22 C27   30.4
C22 C21 H22 H21   119.9
C22 C27 H27 C26   180.6
H27 C27 C26 H26   0.3
H11N N1 C1 C2 179.1 0.1
H11N N1 C1 OAB 0.0 179.7
C1 N1 H11N H12N 180.0 180.0
H12N N1 C1 C2 359.1 180.0
H12N N1 C1 OAB 180.0 359.7
C1 N1 H12N H11N 180.0 180.0
O1 CAS HAS1 C18 250.3 240.0
O1 CAS HAS1 HAS2 125.1 120.0
C18 CAS HAS1 HAS2 234.8 240.0
HAS1 CAS C18 H18 69.3 185.1
O1 CAS HAS2 C18 109.7 120.0
O1 CAS HAS2 HAS1 234.9 240.0
C18 CAS HAS2 HAS1 125.1 120.0
HAS2 CAS C18 H18 305.7 65.1
H3 C3 C2 C8 179.7 180.2
C2 C3 H3 C4 180.0 180.1
H3 C3 C4 N3 1.0 0.1
H3 C3 C4 C6 180.2 180.1
C2 C8 H8 C7 180.0 179.7
H8 C8 C7 H7 359.6 359.9
C5 N4 H4 C6 180.0 180.0
H4 N4 C5 C9 359.3 0.1
H4 N4 C6 C7 359.7 359.9
C6 C7 H7 C8 180.0 179.6
H7 C7 C8 H8 359.6 359.9
H10 C10 C9 C14 177.8 180.2
C9 C10 H10 C11 180.0 180.1
H10 C10 C11 C12 180.7 180.1
H10 C10 C11 H11 0.7 0.1
C9 C14 H14 C13 180.0 179.7
H14 C14 C13 H13 1.7 0.0
C10 C11 H11 C12 180.0 180.0
H11 C11 C10 H10 0.7 0.1
H11 C11 C12 C13 182.0 180.0
C12 C13 H13 C14 180.0 179.8
H13 C13 C14 H14 1.7 0.0
H161 C16 C17 H171 180.0 300.8
H161 C16 C17 H172 299.6 180.8
NBG C16 H161 H162 239.7 240.1
H162 C16 C17 H171 300.2 60.8
H162 C16 C17 H172 59.8 300.8
NBG C16 H162 H161 120.3 119.9
C16 C17 H171 H172 119.4 239.9
H171 C17 C18 CAS 59.8 297.5
H171 C17 C18 H18 176.4 57.6
C16 C17 H172 H171 240.6 120.0
H172 C17 C18 CAS 300.2 57.6
H172 C17 C18 H18 56.8 177.7
C17 C18 H18 CAS 239.6 239.9
H18 C18 C19 H191 183.6 302.4
H18 C18 C19 H192 303.2 182.4
H18 C18 CAS HAS1 69.3 185.1
H18 C18 CAS HAS2 305.7 65.1
C18 C19 H191 H192 119.5 239.9
H191 C19 C20 NBG 300.0 179.2
H191 C19 C20 H201 59.9 299.2
H191 C19 C20 H202 180.1 59.1
C18 C19 H192 H191 240.5 120.1
H192 C19 C20 NBG 180.3 299.1
H192 C19 C20 H201 300.2 59.2
H192 C19 C20 H202 60.4 179.1
H201 C20 NBG C16 173.1 178.2
C19 C20 H201 NBG 240.9 239.9
C19 C20 H201 H202 120.4 120.0
NBG C20 H201 H202 239.5 240.0
H202 C20 NBG C16 52.8 58.3
C19 C20 H202 NBG 119.1 120.0
C19 C20 H202 H201 239.6 240.0
NBG C20 H202 H201 120.5 120.0