PDB Chemical Component A9K
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A9K
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C12 |
1.356 |
1.359 |
| N |
C |
1.441 |
1.469 |
| C12 |
C11 |
1.391 |
1.385 |
| C12 |
C7 |
1.401 |
1.398 |
| CL |
C5 |
1.733 |
1.736 |
| C6 |
C5 |
1.380 |
1.381 |
| C6 |
C1 |
1.388 |
1.383 |
| C11 |
C10 |
1.382 |
1.381 |
| C |
C1 |
1.505 |
1.507 |
| C5 |
C4 |
1.391 |
1.395 |
| C1 |
C2 |
1.385 |
1.383 |
| C4 |
C3 |
1.395 |
1.394 |
| C4 |
C7 |
1.494 |
1.483 |
| C2 |
C3 |
1.383 |
1.381 |
| C7 |
C8 |
1.396 |
1.393 |
| C10 |
C9 |
1.375 |
1.384 |
| C8 |
C9 |
1.384 |
1.380 |
| C2 |
H1 |
1.080 |
1.080 |
| C3 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.080 |
1.080 |
| C |
H4 |
1.100 |
1.091 |
| C |
H5 |
1.100 |
1.090 |
| N |
H6 |
1.000 |
1.010 |
| N |
H7 |
1.000 |
1.009 |
| O |
H9 |
0.950 |
0.967 |
| C11 |
H10 |
1.080 |
1.081 |
| C10 |
H11 |
1.080 |
1.080 |
| C9 |
H12 |
1.080 |
1.080 |
| C8 |
H13 |
1.080 |
1.080 |
Bond Angles for A9K
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C12 |
C11 |
119.9 |
120.1 |
| N |
C |
H4 |
107.7 |
109.5 |
| N |
C |
H5 |
107.7 |
109.5 |
| C12 |
C11 |
C10 |
120.0 |
120.1 |
| C12 |
C11 |
H10 |
120.0 |
120.0 |
| C12 |
C7 |
C8 |
118.1 |
119.7 |
| C11 |
C10 |
C9 |
120.1 |
120.3 |
| C10 |
C11 |
H10 |
120.0 |
119.9 |
| C11 |
C10 |
H11 |
120.0 |
119.9 |
| C5 |
C4 |
C7 |
123.3 |
120.2 |
| C1 |
C2 |
C3 |
121.2 |
120.1 |
| C1 |
C2 |
H1 |
119.4 |
119.9 |
| C4 |
C3 |
H2 |
119.6 |
120.0 |
| C4 |
C7 |
C8 |
118.3 |
120.1 |
| C3 |
C2 |
H1 |
119.4 |
119.9 |
| C2 |
C3 |
H2 |
119.6 |
120.1 |
| C7 |
C8 |
C9 |
121.0 |
119.9 |
| C7 |
C8 |
H13 |
119.5 |
120.0 |
| C9 |
C10 |
H11 |
119.9 |
119.8 |
| C10 |
C9 |
H12 |
119.9 |
119.9 |
| C8 |
C9 |
H12 |
119.9 |
119.9 |
| H4 |
C |
H5 |
109.5 |
109.4 |
| H6 |
N |
H7 |
109.5 |
111.0 |
Torsion Angles for A9K
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C12 |
C11 |
C10 |
178.8 |
180.0 |
| O |
C12 |
C11 |
H10 |
358.8 |
359.9 |
| O |
C12 |
C7 |
C8 |
181.2 |
180.3 |
| H4 |
C |
N |
H5 |
242.0 |
120.0 |
| C11 |
C12 |
C7 |
C8 |
0.4 |
0.3 |
| C12 |
C11 |
C10 |
C9 |
360.0 |
0.0 |
| C10 |
C11 |
C12 |
H10 |
180.0 |
180.0 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C4 |
C7 |
C12 |
C8 |
180.2 |
179.7 |
| C12 |
C7 |
C8 |
C9 |
359.9 |
359.4 |
| C12 |
C7 |
C8 |
H13 |
179.9 |
179.8 |
| CL |
C5 |
C4 |
C7 |
5.0 |
0.1 |
| C6 |
C5 |
C4 |
C7 |
183.4 |
180.0 |
| C6 |
C1 |
C2 |
H1 |
181.0 |
180.0 |
| C12 |
C11 |
C10 |
H10 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H11 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H12 |
180.3 |
180.0 |
| C |
C1 |
C2 |
H1 |
1.9 |
359.7 |
| C5 |
C4 |
C3 |
H2 |
179.0 |
180.0 |
| C5 |
C4 |
C7 |
C8 |
98.4 |
244.9 |
| C3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| C1 |
C2 |
C3 |
H2 |
179.7 |
180.0 |
| C4 |
C3 |
C2 |
H1 |
179.7 |
180.0 |
| C2 |
C3 |
C4 |
H2 |
180.0 |
180.0 |
| C12 |
C7 |
C4 |
C8 |
179.8 |
180.3 |
| C7 |
C4 |
C3 |
H2 |
357.1 |
360.0 |
| C4 |
C7 |
C8 |
C9 |
179.8 |
179.6 |
| C4 |
C7 |
C8 |
H13 |
359.8 |
0.1 |
| C1 |
C2 |
C3 |
H1 |
180.0 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
H12 |
179.8 |
180.3 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
180.1 |
| C11 |
C10 |
C9 |
H11 |
180.0 |
180.0 |
| C7 |
C8 |
C9 |
C10 |
359.7 |
0.6 |
| C8 |
C9 |
C10 |
H12 |
180.0 |
179.7 |
| C7 |
C8 |
C9 |
H13 |
180.0 |
180.4 |
| C8 |
C9 |
C10 |
H11 |
180.3 |
179.7 |
| C10 |
C9 |
C8 |
H12 |
180.0 |
180.3 |
| C1 |
C2 |
H1 |
C3 |
180.0 |
180.0 |
| H1 |
C2 |
C3 |
H2 |
359.7 |
360.0 |
| H2 |
C3 |
C2 |
H1 |
359.7 |
360.0 |
| N |
C |
H4 |
H5 |
116.9 |
240.0 |
| N |
C |
H5 |
H4 |
243.1 |
120.0 |
| H6 |
N |
C |
H4 |
301.0 |
60.0 |
| H6 |
N |
C |
H5 |
59.0 |
300.0 |
| H7 |
N |
C |
H4 |
61.0 |
183.9 |
| H7 |
N |
C |
H5 |
179.0 |
64.0 |
| H9 |
O |
C12 |
C11 |
180.0 |
90.0 |
| C12 |
C11 |
H10 |
C10 |
180.0 |
180.0 |
| H10 |
C11 |
C10 |
C9 |
180.0 |
180.1 |
| H10 |
C11 |
C10 |
H11 |
360.0 |
0.1 |
| C11 |
C10 |
H11 |
C9 |
180.0 |
180.0 |
| H11 |
C10 |
C11 |
H10 |
360.0 |
0.1 |
| H11 |
C10 |
C9 |
H12 |
0.3 |
360.0 |
| H12 |
C9 |
C10 |
H11 |
0.3 |
360.0 |
| C7 |
C8 |
H13 |
C9 |
180.0 |
179.6 |
| H13 |
C8 |
C9 |
H12 |
359.8 |
359.9 |