PDB Chemical Component A9C

Ideal Model

Chemical Description

Name N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide
Formula C34 H45 N5 O3
Formal charge 0
Molecular weight 571.753 g/mol
Component type NON-POLYMER

Chemical features

Atom count 87
Chiral atom count 2
Chiral atoms CBM CBL
Bond count 90
Aromatic bond count 12

Chemical Identifiers

Systematic name (ACDLabs) N-{[3-({[(1S,2R)-2-{[(2E)-2-cyano-4,4-dimethylpent-2-enoyl]amino}cyclopentyl]oxy}methyl)phenyl]methyl}-4-[(4-methylpiperazin-1-yl)methyl]benzamide
Systematic name (OpenEye OEToolkits) ~{N}-[[3-[[(1~{S},2~{R})-2-[[(~{E})-2-cyano-4,4-dimethyl-pent-2-enoyl]amino]cyclopentyl]oxymethyl]phenyl]methyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide

Chemical Descriptors

Stereo SMILES (CACTVS) CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[C@H]4CCC[C@H]4NC(=O)\C(=C\C(C)(C)C)C#N)c3
SMILES (CACTVS) CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(CO[CH]4CCC[CH]4NC(=O)C(=CC(C)(C)C)C#N)c3
Stereo SMILES (OpenEye) CC(C)(C)/C=C(\C#N)/C(=O)N[C@@H]1CCC[C@@H]1OCc2cccc(c2)CNC(=O)c3ccc(cc3)CN4CCN(CC4)C
InChI descriptor InChI=1S/C34H45N5O3/c1-34(2,3)20-29(21-35)33(41)37-30-9-6-10-31(30)42-24-27-8-5-7-26(19-27)22-36-32(40)28-13-11-25(12-14-28)23-39-17-15-38(4)16-18-39/h5,7-8,11-14,19-20,30-31H,6,9-10,15-18,22-24H2,1-4H3,(H,36,40)(H,37,41)/t30-,31+/m1/s1
InChIKey descriptor BUZJOXNDWIIWSG-JSOSNVBQSA-N

Status Information

Last modified 2019-10-11
Created 2018-10-24
Release status REL
Model PDB code 6IJR
Processing site PDBJ