Atom Nomenclature for A9C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for A9C

Atom Name (V3) Atom Name (V2)
CAV C1
CAT C2
NBN N1
CAA C3
CAU C4
CAW C5
NBO N2
CAZ C6
CBH C7
CAM C8
CAO C9
CAL C10
CAN C11
CBJ C12
CBE C13
OAF O1
NBB N3
CAX C14
CBG C15
CAP C16
CAJ C17
CAI C18
CAK C19
CBI C20
CAY C21
OBD O2
CBM C22
CAS C23
CAQ C24
CAR C25
CBL C26
NBC N4
CBF C27
OAG O3
CBK C28
CAH C29
NAE N5
CBA C30
CBP C31
CAC C32
CAD C33
CAB C34
H1 H1
H2 H2
H3 H3
H4 H4
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H39 H39
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49