PDB Chemical Component A7E

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A7E

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O3' C3' 1.443 1.429
OP2 P 1.494 1.610
OP1 P 1.523 1.480
C3' C2' 1.520 1.548
C3' C4' 1.539 1.541
P O5' 1.614 1.610
O5' C5' 1.406 1.429
C5' C4' 1.521 1.530
C2' O2' 1.463 1.428
C2' C1' 1.540 1.551
C4' O4' 1.440 1.437
C25 C24 1.278 1.174
C24 C7 1.328 1.432
N8 C7 1.340 1.314
N8 N9 1.405 1.398
C7 C5 1.467 1.464
N9 C1' 1.473 1.465
N9 C4 1.326 1.363
C1' O4' 1.428 1.444
C5 C4 1.455 1.407
C5 C6 1.458 1.404
N6 C6 1.346 1.381
C4 N3 1.346 1.333
C6 N1 1.353 1.329
N3 C2 1.336 1.315
N1 C2 1.344 1.322
OP2 H2 0.950 0.967
C5' H3 1.100 1.091
C5' H4 1.100 1.089
C4' H5 1.100 1.090
C1' H6 1.100 1.090
C25 H7 1.060 1.049
N6 H8 1.000 0.970
N6 H9 1.000 0.969
C2 H10 1.080 1.080
C2' H11 1.100 1.090
O2' H12 0.950 0.967
C3' H13 1.100 1.091
O3' H14 0.950 0.967
P OP3   1.610
OP3 HOP3   0.967

Bond Angles for A7E

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O3' C3' H13 109.9 110.5
OP2 P O5' 114.5 109.5
OP2 P OP3   109.5
OP1 P O5' 106.5 109.5
OP1 P OP3   109.5
C3' C2' H11 109.9 110.9
C3' C4' H5 107.4 110.0
P O5' C5' 114.2 123.0
O5' P OP3   109.5
O5' C5' C4' 111.1 109.5
O5' C5' H3 109.1 109.5
O5' C5' H4 109.1 109.5
C5' C4' O4' 110.1 109.9
C4' C5' H3 109.1 109.4
C4' C5' H4 109.1 109.5
C5' C4' H5 107.7 109.8
O2' C2' H11 110.7 110.8
C2' O2' H12 109.5 114.0
C2' C1' H6 109.7 110.6
O4' C4' H5 108.7 109.9
C24 C7 C5 124.9 126.3
N8 C7 C5 111.6 107.3
N8 N9 C4 115.0 109.5
C7 C5 C4 103.4 106.4
C7 C5 C6 140.2 135.0
N9 C1' H6 110.7 110.6
N9 C4 C5 105.9 106.9
N9 C4 N3 132.9 134.5
C6 C5 C4 116.3 118.6
C5 C4 N3 121.2 118.6
C5 C6 N1 116.8 118.3
N6 C6 N1 123.6 120.8
C6 N1 C2 123.9 121.1
N3 C2 H10 119.1 118.7
N1 C2 H10 119.1 118.7
H3 C5' H4 109.5 109.4
H8 N6 H9 109.5 120.0
P OP3 HOP3   114.0

Torsion Angles for A7E

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O3' C3' C2' H11 274.5 216.0
O3' C3' C4' H5 317.2 358.7
OP1 P OP2 O5' 235.7 120.0
OP1 P OP2 OP3   240.0
OP2 P O5' C5' 42.5 65.0
O5' P OP2 OP3   120.0
OP2 P OP3 HOP3   300.0
OP2 P OP1 O5' 128.4 240.0
OP2 P OP1 OP3   120.0
OP1 P O5' C5' 171.4 305.0
O5' P OP1 OP3   240.0
OP1 P OP3 HOP3   60.0
C2' C3' C4' H5 81.2 117.4
O2' C2' C3' H11 122.2 123.6
C3' C2' O2' H12 180.0 292.7
C3' C2' C1' H6 208.4 278.5
C3' C4' C5' H3 289.3 64.3
C3' C4' C5' H4 169.8 304.3
C5' C4' C3' H5 120.9 121.1
O4' C4' C3' H5 243.9 240.5
OP2 P O5' OP3   240.0
OP1 P O5' OP3   120.0
P O5' C5' C4' 180.9 180.0
P O5' C5' H3 301.2 300.0
P O5' C5' H4 60.7 60.0
O5' P OP3 HOP3   180.0
C5' O5' P OP3   185.0
O5' C5' C4' O4' 288.6 66.4
C4' C5' O5' H3 239.8 240.0
C4' C5' O5' H4 120.2 120.1
O5' C5' C4' H5 170.3 305.4
H3 C5' O5' H4 240.5 240.0
C3' C4' C5' H5 239.2 238.8
O5' C5' C4' H3 120.2 120.0
O5' C5' C4' H4 239.8 239.9
O4' C4' C5' H5 118.3 121.0
H3 C5' C4' H4 119.5 120.0
C3' C2' O2' H11 238.3 236.3
O2' C2' C1' H6 326.8 36.7
N9 C1' C2' H6 239.3 237.1
C3' C4' O4' H5 115.2 119.6
O4' C4' C5' H3 168.3 306.4
O4' C4' C5' H4 48.8 186.5
C5' C4' O4' H5 242.3 239.0
C25 C24 C7 C5 354.8 48.2
N8 C7 C24 C5 179.8 179.9
C24 C7 C5 C4 179.9 179.7
C24 C7 C5 C6 360.0 360.0
C24 C7 N8 C5 180.1 180.1
C7 N8 N9 C4 1.8 0.3
N8 C7 C5 C4 0.0 359.8
N8 C7 C5 C6 180.1 180.0
N8 N9 C1' H6 145.1 166.7
N8 N9 C4 C5 358.2 359.6
N8 N9 C4 N3 178.4 180.6
N9 C4 C5 C7 1.0 0.4
C6 C5 C7 C4 180.1 180.3
C7 C5 C4 N3 180.9 179.6
C7 C5 C6 N1 180.2 180.1
C2' C1' N9 H6 120.1 122.9
C7 C5 C4 N9 1.0 0.4
C4 N9 C1' H6 320.5 346.4
C6 C5 C4 N9 181.0 180.2
C5 C4 N9 N3 179.8 179.0
C1' O4' C4' H5 261.2 266.9
C7 C5 C4 C6 180.1 180.2
N9 C4 C5 N3 180.1 180.9
C4 C5 C6 N1 0.3 0.3
C7 C5 C6 C4 179.9 179.7
N9 C4 C5 C6 181.0 180.2
C6 C5 C4 N3 0.8 359.4
N6 C6 C5 N1 179.2 180.0
C5 C6 N1 C2 359.4 360.0
N6 C6 C5 C4 179.5 180.3
C5 C6 N6 N1 180.9 180.0
N6 C6 N1 C2 180.3 180.0
N9 C4 N3 C5 179.8 178.9
C4 N3 C2 H10 181.6 179.6
N1 C6 C5 C4 0.3 0.3
C6 N1 C2 H10 179.6 180.0
N9 C4 N3 C2 178.1 179.5
C5 C4 N3 C2 358.2 0.6
N1 C2 N3 H10 180.0 180.0
N3 C2 N1 H10 180.0 180.0
H2 OP2 P O5' 124.3 60.0
H2 OP2 P OP3   300.0
O5' C5' H3 C4' 238.5 240.0
O5' C5' H3 H4 119.3 120.0
H3 C5' C4' O4' 168.3 306.4
C4' C5' H3 H4 240.7 240.0
H3 C5' C4' H5 50.0 185.5
O5' C5' H4 C4' 121.5 120.1
O5' C5' H4 H3 240.8 240.0
H4 C5' C4' O4' 48.8 186.5
C4' C5' H4 H3 119.3 120.0
H4 C5' C4' H5 290.5 65.5
C5' C4' H5 O4' 119.2 121.0
H5 C4' C5' H3 50.0 185.5
H5 C4' C5' H4 290.5 65.5
H8 N6 C6 N1 360.0 180.1
H9 N6 C6 N1 120.0 360.0
H11 C2' O2' H12 301.7 56.4
H11 C2' C1' H6 92.6 160.3
H12 O2' C2' H11 301.7 56.4
H13 C3' C2' H11 39.0 338.7
H13 C3' C4' H5 195.8 236.1
H14 O3' C3' H13 56.1 298.8
OP2 P OP3 O5'   120.0
OP1 P OP3 O5'   240.0
OP3 P O5' C5'   185.0