PDB Chemical Component A7E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A7E
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O3' |
C3' |
1.443 |
1.429 |
OP2 |
P |
1.494 |
1.610 |
OP1 |
P |
1.523 |
1.480 |
C3' |
C2' |
1.520 |
1.548 |
C3' |
C4' |
1.539 |
1.541 |
P |
O5' |
1.614 |
1.610 |
O5' |
C5' |
1.406 |
1.429 |
C5' |
C4' |
1.521 |
1.530 |
C2' |
O2' |
1.463 |
1.428 |
C2' |
C1' |
1.540 |
1.551 |
C4' |
O4' |
1.440 |
1.437 |
C25 |
C24 |
1.278 |
1.174 |
C24 |
C7 |
1.328 |
1.432 |
N8 |
C7 |
1.340 |
1.314 |
N8 |
N9 |
1.405 |
1.398 |
C7 |
C5 |
1.467 |
1.464 |
N9 |
C1' |
1.473 |
1.465 |
N9 |
C4 |
1.326 |
1.363 |
C1' |
O4' |
1.428 |
1.444 |
C5 |
C4 |
1.455 |
1.407 |
C5 |
C6 |
1.458 |
1.404 |
N6 |
C6 |
1.346 |
1.381 |
C4 |
N3 |
1.346 |
1.333 |
C6 |
N1 |
1.353 |
1.329 |
N3 |
C2 |
1.336 |
1.315 |
N1 |
C2 |
1.344 |
1.322 |
OP2 |
H2 |
0.950 |
0.967 |
C5' |
H3 |
1.100 |
1.091 |
C5' |
H4 |
1.100 |
1.089 |
C4' |
H5 |
1.100 |
1.090 |
C1' |
H6 |
1.100 |
1.090 |
C25 |
H7 |
1.060 |
1.049 |
N6 |
H8 |
1.000 |
0.970 |
N6 |
H9 |
1.000 |
0.969 |
C2 |
H10 |
1.080 |
1.080 |
C2' |
H11 |
1.100 |
1.090 |
O2' |
H12 |
0.950 |
0.967 |
C3' |
H13 |
1.100 |
1.091 |
O3' |
H14 |
0.950 |
0.967 |
P |
OP3 |
|
1.610 |
OP3 |
HOP3 |
|
0.967 |
Bond Angles for A7E
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
H13 |
109.9 |
110.5 |
OP2 |
P |
O5' |
114.5 |
109.5 |
OP2 |
P |
OP3 |
|
109.5 |
OP1 |
P |
O5' |
106.5 |
109.5 |
OP1 |
P |
OP3 |
|
109.5 |
C3' |
C2' |
H11 |
109.9 |
110.9 |
C3' |
C4' |
H5 |
107.4 |
110.0 |
P |
O5' |
C5' |
114.2 |
123.0 |
O5' |
P |
OP3 |
|
109.5 |
O5' |
C5' |
C4' |
111.1 |
109.5 |
O5' |
C5' |
H3 |
109.1 |
109.5 |
O5' |
C5' |
H4 |
109.1 |
109.5 |
C5' |
C4' |
O4' |
110.1 |
109.9 |
C4' |
C5' |
H3 |
109.1 |
109.4 |
C4' |
C5' |
H4 |
109.1 |
109.5 |
C5' |
C4' |
H5 |
107.7 |
109.8 |
O2' |
C2' |
H11 |
110.7 |
110.8 |
C2' |
O2' |
H12 |
109.5 |
114.0 |
C2' |
C1' |
H6 |
109.7 |
110.6 |
O4' |
C4' |
H5 |
108.7 |
109.9 |
C24 |
C7 |
C5 |
124.9 |
126.3 |
N8 |
C7 |
C5 |
111.6 |
107.3 |
N8 |
N9 |
C4 |
115.0 |
109.5 |
C7 |
C5 |
C4 |
103.4 |
106.4 |
C7 |
C5 |
C6 |
140.2 |
135.0 |
N9 |
C1' |
H6 |
110.7 |
110.6 |
N9 |
C4 |
C5 |
105.9 |
106.9 |
N9 |
C4 |
N3 |
132.9 |
134.5 |
C6 |
C5 |
C4 |
116.3 |
118.6 |
C5 |
C4 |
N3 |
121.2 |
118.6 |
C5 |
C6 |
N1 |
116.8 |
118.3 |
N6 |
C6 |
N1 |
123.6 |
120.8 |
C6 |
N1 |
C2 |
123.9 |
121.1 |
N3 |
C2 |
H10 |
119.1 |
118.7 |
N1 |
C2 |
H10 |
119.1 |
118.7 |
H3 |
C5' |
H4 |
109.5 |
109.4 |
H8 |
N6 |
H9 |
109.5 |
120.0 |
P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for A7E
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O3' |
C3' |
C2' |
H11 |
274.5 |
216.0 |
O3' |
C3' |
C4' |
H5 |
317.2 |
358.7 |
OP1 |
P |
OP2 |
O5' |
235.7 |
120.0 |
OP1 |
P |
OP2 |
OP3 |
|
240.0 |
OP2 |
P |
O5' |
C5' |
42.5 |
65.0 |
O5' |
P |
OP2 |
OP3 |
|
120.0 |
OP2 |
P |
OP3 |
HOP3 |
|
300.0 |
OP2 |
P |
OP1 |
O5' |
128.4 |
240.0 |
OP2 |
P |
OP1 |
OP3 |
|
120.0 |
OP1 |
P |
O5' |
C5' |
171.4 |
305.0 |
O5' |
P |
OP1 |
OP3 |
|
240.0 |
OP1 |
P |
OP3 |
HOP3 |
|
60.0 |
C2' |
C3' |
C4' |
H5 |
81.2 |
117.4 |
O2' |
C2' |
C3' |
H11 |
122.2 |
123.6 |
C3' |
C2' |
O2' |
H12 |
180.0 |
292.7 |
C3' |
C2' |
C1' |
H6 |
208.4 |
278.5 |
C3' |
C4' |
C5' |
H3 |
289.3 |
64.3 |
C3' |
C4' |
C5' |
H4 |
169.8 |
304.3 |
C5' |
C4' |
C3' |
H5 |
120.9 |
121.1 |
O4' |
C4' |
C3' |
H5 |
243.9 |
240.5 |
OP2 |
P |
O5' |
OP3 |
|
240.0 |
OP1 |
P |
O5' |
OP3 |
|
120.0 |
P |
O5' |
C5' |
C4' |
180.9 |
180.0 |
P |
O5' |
C5' |
H3 |
301.2 |
300.0 |
P |
O5' |
C5' |
H4 |
60.7 |
60.0 |
O5' |
P |
OP3 |
HOP3 |
|
180.0 |
C5' |
O5' |
P |
OP3 |
|
185.0 |
O5' |
C5' |
C4' |
O4' |
288.6 |
66.4 |
C4' |
C5' |
O5' |
H3 |
239.8 |
240.0 |
C4' |
C5' |
O5' |
H4 |
120.2 |
120.1 |
O5' |
C5' |
C4' |
H5 |
170.3 |
305.4 |
H3 |
C5' |
O5' |
H4 |
240.5 |
240.0 |
C3' |
C4' |
C5' |
H5 |
239.2 |
238.8 |
O5' |
C5' |
C4' |
H3 |
120.2 |
120.0 |
O5' |
C5' |
C4' |
H4 |
239.8 |
239.9 |
O4' |
C4' |
C5' |
H5 |
118.3 |
121.0 |
H3 |
C5' |
C4' |
H4 |
119.5 |
120.0 |
C3' |
C2' |
O2' |
H11 |
238.3 |
236.3 |
O2' |
C2' |
C1' |
H6 |
326.8 |
36.7 |
N9 |
C1' |
C2' |
H6 |
239.3 |
237.1 |
C3' |
C4' |
O4' |
H5 |
115.2 |
119.6 |
O4' |
C4' |
C5' |
H3 |
168.3 |
306.4 |
O4' |
C4' |
C5' |
H4 |
48.8 |
186.5 |
C5' |
C4' |
O4' |
H5 |
242.3 |
239.0 |
C25 |
C24 |
C7 |
C5 |
354.8 |
48.2 |
N8 |
C7 |
C24 |
C5 |
179.8 |
179.9 |
C24 |
C7 |
C5 |
C4 |
179.9 |
179.7 |
C24 |
C7 |
C5 |
C6 |
360.0 |
360.0 |
C24 |
C7 |
N8 |
C5 |
180.1 |
180.1 |
C7 |
N8 |
N9 |
C4 |
1.8 |
0.3 |
N8 |
C7 |
C5 |
C4 |
0.0 |
359.8 |
N8 |
C7 |
C5 |
C6 |
180.1 |
180.0 |
N8 |
N9 |
C1' |
H6 |
145.1 |
166.7 |
N8 |
N9 |
C4 |
C5 |
358.2 |
359.6 |
N8 |
N9 |
C4 |
N3 |
178.4 |
180.6 |
N9 |
C4 |
C5 |
C7 |
1.0 |
0.4 |
C6 |
C5 |
C7 |
C4 |
180.1 |
180.3 |
C7 |
C5 |
C4 |
N3 |
180.9 |
179.6 |
C7 |
C5 |
C6 |
N1 |
180.2 |
180.1 |
C2' |
C1' |
N9 |
H6 |
120.1 |
122.9 |
C7 |
C5 |
C4 |
N9 |
1.0 |
0.4 |
C4 |
N9 |
C1' |
H6 |
320.5 |
346.4 |
C6 |
C5 |
C4 |
N9 |
181.0 |
180.2 |
C5 |
C4 |
N9 |
N3 |
179.8 |
179.0 |
C1' |
O4' |
C4' |
H5 |
261.2 |
266.9 |
C7 |
C5 |
C4 |
C6 |
180.1 |
180.2 |
N9 |
C4 |
C5 |
N3 |
180.1 |
180.9 |
C4 |
C5 |
C6 |
N1 |
0.3 |
0.3 |
C7 |
C5 |
C6 |
C4 |
179.9 |
179.7 |
N9 |
C4 |
C5 |
C6 |
181.0 |
180.2 |
C6 |
C5 |
C4 |
N3 |
0.8 |
359.4 |
N6 |
C6 |
C5 |
N1 |
179.2 |
180.0 |
C5 |
C6 |
N1 |
C2 |
359.4 |
360.0 |
N6 |
C6 |
C5 |
C4 |
179.5 |
180.3 |
C5 |
C6 |
N6 |
N1 |
180.9 |
180.0 |
N6 |
C6 |
N1 |
C2 |
180.3 |
180.0 |
N9 |
C4 |
N3 |
C5 |
179.8 |
178.9 |
C4 |
N3 |
C2 |
H10 |
181.6 |
179.6 |
N1 |
C6 |
C5 |
C4 |
0.3 |
0.3 |
C6 |
N1 |
C2 |
H10 |
179.6 |
180.0 |
N9 |
C4 |
N3 |
C2 |
178.1 |
179.5 |
C5 |
C4 |
N3 |
C2 |
358.2 |
0.6 |
N1 |
C2 |
N3 |
H10 |
180.0 |
180.0 |
N3 |
C2 |
N1 |
H10 |
180.0 |
180.0 |
H2 |
OP2 |
P |
O5' |
124.3 |
60.0 |
H2 |
OP2 |
P |
OP3 |
|
300.0 |
O5' |
C5' |
H3 |
C4' |
238.5 |
240.0 |
O5' |
C5' |
H3 |
H4 |
119.3 |
120.0 |
H3 |
C5' |
C4' |
O4' |
168.3 |
306.4 |
C4' |
C5' |
H3 |
H4 |
240.7 |
240.0 |
H3 |
C5' |
C4' |
H5 |
50.0 |
185.5 |
O5' |
C5' |
H4 |
C4' |
121.5 |
120.1 |
O5' |
C5' |
H4 |
H3 |
240.8 |
240.0 |
H4 |
C5' |
C4' |
O4' |
48.8 |
186.5 |
C4' |
C5' |
H4 |
H3 |
119.3 |
120.0 |
H4 |
C5' |
C4' |
H5 |
290.5 |
65.5 |
C5' |
C4' |
H5 |
O4' |
119.2 |
121.0 |
H5 |
C4' |
C5' |
H3 |
50.0 |
185.5 |
H5 |
C4' |
C5' |
H4 |
290.5 |
65.5 |
H8 |
N6 |
C6 |
N1 |
360.0 |
180.1 |
H9 |
N6 |
C6 |
N1 |
120.0 |
360.0 |
H11 |
C2' |
O2' |
H12 |
301.7 |
56.4 |
H11 |
C2' |
C1' |
H6 |
92.6 |
160.3 |
H12 |
O2' |
C2' |
H11 |
301.7 |
56.4 |
H13 |
C3' |
C2' |
H11 |
39.0 |
338.7 |
H13 |
C3' |
C4' |
H5 |
195.8 |
236.1 |
H14 |
O3' |
C3' |
H13 |
56.1 |
298.8 |
OP2 |
P |
OP3 |
O5' |
|
120.0 |
OP1 |
P |
OP3 |
O5' |
|
240.0 |
OP3 |
P |
O5' |
C5' |
|
185.0 |