Atom Nomenclature for A78

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for A78

Atom Name (V3) Atom Name (V2)
C1 C1
O2 O2
N3 N3
C4 C4
C5 C5
C6 C6
C7 C7
N8 N8
C9 C9
C10 C10
C11 C11
N22 N22
C23 C23
C24 C24
O25 O25
C26 C26
C27 C27
C28 C28
N38 N38
C39 C39
C40 C40
C41 C41
C42 C42
C43 C43
C44 C44
C45 C45
C46 C46
C47 C47
O48 O48
C49 C49
N50 N50
C51 C51
C52 C52
C53 C53
C54 C54
C55 C55
C56 C56
C57 C57
C58 C58
N81 N81
C82 C82
C83 C83
O84 O84
C85 C85
C86 C86
C87 C87
C97 C97
O98 O98
N99 N99
C2 C2
C3 C3
C8 C8
C12 C12
N10 N10
C13 C13
C14 C14
C15 C15
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65
H66 H66
H67 H67
H68 H68
H69 H69
H70 H70
H71 H71
H72 H72
H73 H73
H74 H74
H75 H75
H76 H76
H77 H77
H78 H78
H79 H79
H80 H80
H88 H88
H89 H89
H90 H90
H91 H91
H92 H92
H93 H93
H94 H94
H95 H95
H96 H96
H10 H10
H1 H1
H11 H11
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8