PDB Chemical Component A6V
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A6V
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C17 |
C16 |
1.515 |
1.533 |
C17 |
C18 |
1.511 |
1.531 |
C16 |
C13 |
1.536 |
1.530 |
C14 |
C13 |
1.539 |
1.530 |
C13 |
C15 |
1.535 |
1.530 |
C13 |
C2 |
1.543 |
1.501 |
N |
C11 |
1.465 |
1.469 |
C18 |
C1 |
1.507 |
1.501 |
C11 |
C10 |
1.523 |
1.530 |
C2 |
C1 |
1.339 |
1.295 |
C2 |
C3 |
1.508 |
1.506 |
C10 |
C9 |
1.526 |
1.530 |
C1 |
C |
1.506 |
1.507 |
O |
C3 |
1.421 |
1.429 |
O |
C4 |
1.370 |
1.359 |
O1 |
C9 |
1.423 |
1.429 |
C12 |
C4 |
1.387 |
1.387 |
C12 |
C8 |
1.390 |
1.381 |
C9 |
C8 |
1.515 |
1.507 |
C4 |
C5 |
1.388 |
1.388 |
C8 |
C7 |
1.385 |
1.382 |
C5 |
C6 |
1.385 |
1.382 |
C7 |
C6 |
1.384 |
1.383 |
O1 |
H1 |
0.950 |
0.967 |
C9 |
H2 |
1.100 |
1.091 |
C10 |
H3 |
1.100 |
1.090 |
C10 |
H4 |
1.100 |
1.091 |
C11 |
H5 |
1.100 |
1.090 |
C11 |
H6 |
1.099 |
1.090 |
N |
H7 |
1.000 |
1.009 |
N |
H8 |
1.000 |
1.009 |
C7 |
H10 |
1.080 |
1.080 |
C6 |
H11 |
1.080 |
1.080 |
C5 |
H12 |
1.080 |
1.080 |
C12 |
H13 |
1.080 |
1.081 |
C3 |
H14 |
1.100 |
1.090 |
C3 |
H15 |
1.100 |
1.090 |
C14 |
H16 |
1.100 |
1.090 |
C14 |
H17 |
1.100 |
1.091 |
C14 |
H18 |
1.100 |
1.090 |
C15 |
H19 |
1.100 |
1.090 |
C15 |
H20 |
1.100 |
1.089 |
C15 |
H21 |
1.100 |
1.090 |
C16 |
H22 |
1.100 |
1.090 |
C16 |
H23 |
1.100 |
1.090 |
C17 |
H24 |
1.100 |
1.090 |
C17 |
H25 |
1.099 |
1.090 |
C18 |
H26 |
1.100 |
1.090 |
C18 |
H27 |
1.100 |
1.089 |
C |
H28 |
1.100 |
1.091 |
C |
H29 |
1.100 |
1.089 |
C |
H30 |
1.100 |
1.090 |
Bond Angles for A6V
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C17 |
C16 |
H22 |
108.7 |
109.6 |
C17 |
C16 |
H23 |
108.8 |
109.8 |
C17 |
C18 |
C1 |
114.5 |
110.2 |
C18 |
C17 |
H24 |
109.2 |
109.6 |
C18 |
C17 |
H25 |
109.2 |
109.6 |
C17 |
C18 |
H26 |
108.2 |
109.3 |
C17 |
C18 |
H27 |
108.2 |
109.4 |
C14 |
C13 |
C15 |
109.4 |
109.3 |
C13 |
C15 |
H19 |
109.5 |
109.5 |
C13 |
C15 |
H20 |
109.4 |
109.4 |
C13 |
C15 |
H21 |
109.4 |
109.4 |
C13 |
C2 |
C1 |
122.1 |
124.0 |
N |
C11 |
H5 |
107.7 |
109.5 |
N |
C11 |
H6 |
107.8 |
109.5 |
C2 |
C1 |
C18 |
123.4 |
124.1 |
C18 |
C1 |
C |
112.1 |
118.0 |
C1 |
C18 |
H26 |
108.2 |
109.4 |
C1 |
C18 |
H27 |
108.2 |
109.4 |
C11 |
C10 |
H3 |
109.0 |
109.5 |
C11 |
C10 |
H4 |
109.0 |
109.4 |
C2 |
C1 |
C |
124.5 |
118.0 |
C2 |
C3 |
H14 |
109.1 |
109.5 |
C2 |
C3 |
H15 |
109.2 |
109.5 |
C10 |
C9 |
C8 |
114.4 |
109.5 |
C10 |
C9 |
H2 |
108.4 |
109.4 |
C1 |
C |
H28 |
109.5 |
109.5 |
C1 |
C |
H29 |
109.5 |
109.5 |
C1 |
C |
H30 |
109.5 |
109.4 |
O |
C3 |
H14 |
109.1 |
109.5 |
O |
C3 |
H15 |
109.2 |
109.4 |
O1 |
C9 |
C8 |
110.0 |
109.4 |
C9 |
O1 |
H1 |
109.5 |
114.1 |
O1 |
C9 |
H2 |
109.8 |
109.5 |
C4 |
C12 |
H13 |
119.9 |
120.0 |
C9 |
C8 |
C7 |
120.5 |
120.0 |
C8 |
C9 |
H2 |
108.6 |
109.5 |
C4 |
C5 |
H12 |
120.6 |
120.1 |
C8 |
C7 |
C6 |
120.8 |
120.1 |
C8 |
C7 |
H10 |
119.6 |
119.9 |
C5 |
C6 |
H11 |
119.7 |
120.0 |
C6 |
C7 |
H10 |
119.6 |
120.0 |
C7 |
C6 |
H11 |
119.7 |
120.0 |
H3 |
C10 |
H4 |
109.5 |
109.5 |
H5 |
C11 |
H6 |
109.5 |
109.5 |
H7 |
N |
H8 |
109.4 |
111.0 |
H14 |
C3 |
H15 |
109.5 |
109.4 |
H16 |
C14 |
H17 |
109.5 |
109.4 |
H16 |
C14 |
H18 |
109.5 |
109.5 |
H17 |
C14 |
H18 |
109.5 |
109.5 |
H19 |
C15 |
H20 |
109.5 |
109.5 |
H19 |
C15 |
H21 |
109.5 |
109.4 |
H20 |
C15 |
H21 |
109.5 |
109.5 |
H22 |
C16 |
H23 |
109.4 |
109.6 |
H24 |
C17 |
H25 |
109.5 |
109.8 |
H26 |
C18 |
H27 |
109.5 |
109.3 |
H28 |
C |
H29 |
109.5 |
109.5 |
H28 |
C |
H30 |
109.5 |
109.4 |
H29 |
C |
H30 |
109.5 |
109.5 |
Torsion Angles for A6V
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H22 |
C16 |
C17 |
H23 |
240.9 |
120.5 |
C18 |
C17 |
C16 |
H22 |
59.9 |
172.9 |
C18 |
C17 |
C16 |
H23 |
179.0 |
52.4 |
C2 |
C1 |
C18 |
C17 |
350.0 |
342.9 |
C17 |
C18 |
C1 |
C |
170.8 |
163.2 |
C1 |
C18 |
C17 |
H26 |
239.3 |
239.8 |
C1 |
C18 |
C17 |
H27 |
120.7 |
120.2 |
H24 |
C17 |
C18 |
H25 |
119.7 |
120.6 |
H26 |
C18 |
C17 |
H27 |
241.5 |
240.4 |
C16 |
C13 |
C15 |
H19 |
180.0 |
299.3 |
C16 |
C13 |
C15 |
H20 |
300.0 |
59.3 |
C16 |
C13 |
C15 |
H21 |
60.0 |
179.4 |
C16 |
C13 |
C2 |
C1 |
342.5 |
342.9 |
C14 |
C13 |
C15 |
H19 |
61.9 |
179.7 |
C14 |
C13 |
C15 |
H20 |
181.9 |
299.7 |
C14 |
C13 |
C15 |
H21 |
301.9 |
59.8 |
C14 |
C13 |
C2 |
C1 |
103.4 |
103.0 |
C15 |
C13 |
C2 |
C1 |
224.6 |
222.7 |
H19 |
C15 |
C13 |
H20 |
240.0 |
240.0 |
H19 |
C15 |
C13 |
H21 |
120.0 |
119.9 |
H20 |
C15 |
C13 |
H21 |
240.0 |
239.9 |
C13 |
C2 |
C1 |
C18 |
358.6 |
0.4 |
C13 |
C2 |
C1 |
C |
177.7 |
180.2 |
C13 |
C2 |
C3 |
H14 |
166.5 |
293.6 |
C13 |
C2 |
C3 |
H15 |
286.1 |
173.7 |
N |
C11 |
C10 |
H3 |
42.7 |
60.0 |
N |
C11 |
C10 |
H4 |
162.1 |
300.0 |
H5 |
C11 |
N |
H6 |
242.0 |
120.0 |
C1 |
C18 |
C17 |
H24 |
279.8 |
289.7 |
C1 |
C18 |
C17 |
H25 |
160.1 |
169.1 |
C17 |
C18 |
C1 |
H26 |
120.7 |
120.2 |
C17 |
C18 |
C1 |
H27 |
239.3 |
239.8 |
C2 |
C1 |
C18 |
C |
179.2 |
179.7 |
C18 |
C1 |
C |
H28 |
180.0 |
264.2 |
C18 |
C1 |
C |
H29 |
300.0 |
24.2 |
C18 |
C1 |
C |
H30 |
60.0 |
144.3 |
H26 |
C18 |
C1 |
H27 |
118.6 |
119.6 |
C11 |
C10 |
C9 |
C8 |
188.4 |
184.9 |
C11 |
C10 |
C9 |
H2 |
309.6 |
305.0 |
H3 |
C10 |
C11 |
H4 |
240.6 |
120.0 |
C17 |
C18 |
C1 |
C2 |
350.0 |
342.9 |
C18 |
C1 |
C2 |
C |
180.9 |
180.3 |
C2 |
C1 |
C18 |
H26 |
229.2 |
222.7 |
C2 |
C1 |
C18 |
H27 |
110.7 |
103.1 |
C1 |
C2 |
C3 |
H14 |
344.4 |
113.3 |
C1 |
C2 |
C3 |
H15 |
104.0 |
353.4 |
C2 |
C1 |
C |
H28 |
0.8 |
84.4 |
C2 |
C1 |
C |
H29 |
120.8 |
204.5 |
C2 |
C1 |
C |
H30 |
240.8 |
324.5 |
O |
C3 |
C2 |
H14 |
239.8 |
120.0 |
O |
C3 |
C2 |
H15 |
120.2 |
240.0 |
H14 |
C3 |
C2 |
H15 |
240.4 |
120.0 |
O1 |
C9 |
C10 |
C8 |
238.9 |
240.0 |
C10 |
C9 |
O1 |
H1 |
180.0 |
60.0 |
O1 |
C9 |
C10 |
H2 |
117.6 |
120.0 |
C10 |
C9 |
C8 |
C7 |
130.7 |
280.0 |
C8 |
C9 |
C10 |
H2 |
238.7 |
239.9 |
C2 |
C1 |
C |
C18 |
180.8 |
180.3 |
C |
C1 |
C18 |
H26 |
50.0 |
43.0 |
C |
C1 |
C18 |
H27 |
291.5 |
283.4 |
H28 |
C |
C1 |
H29 |
240.0 |
240.0 |
H28 |
C |
C1 |
H30 |
120.0 |
119.9 |
H29 |
C |
C1 |
H30 |
240.0 |
239.9 |
C2 |
C3 |
O |
H14 |
120.2 |
240.0 |
C2 |
C3 |
O |
H15 |
239.8 |
120.0 |
H14 |
C3 |
O |
H15 |
119.6 |
240.1 |
O |
C4 |
C12 |
H13 |
356.6 |
359.4 |
O |
C4 |
C5 |
H12 |
4.6 |
0.3 |
C10 |
C9 |
O1 |
C8 |
123.9 |
120.0 |
C10 |
C9 |
O1 |
H2 |
243.3 |
240.0 |
O1 |
C9 |
C8 |
C7 |
249.4 |
40.0 |
C8 |
C9 |
O1 |
H2 |
119.4 |
120.0 |
C12 |
C4 |
C5 |
H12 |
181.9 |
179.7 |
C12 |
C8 |
C9 |
H2 |
188.2 |
339.7 |
C12 |
C8 |
C7 |
H10 |
181.2 |
180.3 |
C10 |
C9 |
C8 |
H2 |
121.2 |
120.0 |
C8 |
C9 |
O1 |
H1 |
56.1 |
300.0 |
O1 |
C9 |
C8 |
H2 |
239.9 |
240.0 |
C9 |
C8 |
C7 |
C6 |
179.9 |
179.9 |
C9 |
C8 |
C7 |
H10 |
359.9 |
0.0 |
C4 |
C5 |
C6 |
H11 |
178.9 |
180.1 |
C7 |
C8 |
C9 |
H2 |
9.5 |
160.0 |
C6 |
C7 |
C8 |
H10 |
180.0 |
179.9 |
C8 |
C7 |
C6 |
H11 |
179.6 |
179.9 |
C5 |
C6 |
C7 |
H10 |
179.6 |
180.0 |
C7 |
C6 |
C5 |
H11 |
180.0 |
179.9 |
C8 |
C7 |
C6 |
H10 |
180.0 |
180.1 |
C5 |
C6 |
C7 |
H11 |
180.0 |
180.1 |
H1 |
O1 |
C9 |
C8 |
56.1 |
300.0 |
H1 |
O1 |
C9 |
H2 |
296.7 |
180.0 |
C10 |
C9 |
H2 |
C8 |
235.2 |
239.9 |
O1 |
C9 |
H2 |
C8 |
120.3 |
120.0 |
H2 |
C9 |
O1 |
H1 |
296.7 |
180.0 |
H2 |
C9 |
C8 |
C7 |
9.5 |
160.0 |
C11 |
C10 |
H3 |
H4 |
119.1 |
240.0 |
H3 |
C10 |
C9 |
C8 |
68.1 |
305.0 |
H3 |
C10 |
C9 |
H2 |
189.3 |
65.0 |
C11 |
C10 |
H4 |
H3 |
240.9 |
120.0 |
H4 |
C10 |
C9 |
C8 |
308.7 |
65.0 |
H4 |
C10 |
C9 |
H2 |
69.9 |
185.1 |
N |
C11 |
H5 |
H6 |
116.9 |
240.0 |
H5 |
C11 |
C10 |
H3 |
281.7 |
180.0 |
H5 |
C11 |
C10 |
H4 |
41.1 |
60.0 |
N |
C11 |
H6 |
H5 |
243.1 |
120.0 |
H6 |
C11 |
C10 |
H3 |
163.7 |
300.0 |
H6 |
C11 |
C10 |
H4 |
283.1 |
180.0 |
H7 |
N |
C11 |
H5 |
301.0 |
296.0 |
H7 |
N |
C11 |
H6 |
59.1 |
176.0 |
H8 |
N |
C11 |
H5 |
61.0 |
60.0 |
H8 |
N |
C11 |
H6 |
179.0 |
300.0 |
C8 |
C7 |
H10 |
C6 |
180.0 |
179.9 |
H10 |
C7 |
C6 |
H11 |
359.6 |
359.8 |
H11 |
C6 |
C7 |
H10 |
359.6 |
359.8 |
H12 |
C5 |
C6 |
H11 |
358.8 |
0.1 |
C2 |
C3 |
H14 |
H15 |
119.4 |
240.0 |
O |
C3 |
H14 |
H15 |
240.6 |
119.9 |
C2 |
C3 |
H15 |
H14 |
240.6 |
120.0 |
O |
C3 |
H15 |
H14 |
119.4 |
240.0 |
H16 |
C14 |
C13 |
C15 |
296.5 |
60.0 |
H17 |
C14 |
H16 |
H18 |
120.0 |
120.0 |
H17 |
C14 |
C13 |
C15 |
56.6 |
180.0 |
H16 |
C14 |
H17 |
H18 |
240.0 |
240.0 |
H18 |
C14 |
C13 |
C15 |
176.6 |
300.0 |
H16 |
C14 |
H18 |
H17 |
120.0 |
119.9 |
C13 |
C15 |
H19 |
H20 |
120.0 |
120.0 |
C13 |
C15 |
H19 |
H21 |
240.0 |
240.1 |
H20 |
C15 |
H19 |
H21 |
120.1 |
120.1 |
C13 |
C15 |
H20 |
H19 |
240.0 |
240.0 |
C13 |
C15 |
H20 |
H21 |
119.9 |
120.0 |
H19 |
C15 |
H20 |
H21 |
240.0 |
240.0 |
C13 |
C15 |
H21 |
H19 |
120.0 |
120.0 |
C13 |
C15 |
H21 |
H20 |
240.0 |
240.0 |
H19 |
C15 |
H21 |
H20 |
120.1 |
120.1 |
C17 |
C16 |
H22 |
H23 |
118.7 |
239.3 |
C17 |
C16 |
H23 |
H22 |
241.3 |
120.5 |
H24 |
C17 |
C16 |
H22 |
180.1 |
292.5 |
H24 |
C17 |
C16 |
H23 |
299.2 |
172.0 |
H24 |
C17 |
C18 |
C1 |
279.8 |
289.7 |
C18 |
C17 |
H24 |
H25 |
240.4 |
239.5 |
H24 |
C17 |
C18 |
H26 |
40.6 |
49.9 |
H24 |
C17 |
C18 |
H27 |
159.1 |
169.5 |
H25 |
C17 |
C16 |
H22 |
299.8 |
53.2 |
H25 |
C17 |
C16 |
H23 |
58.9 |
292.7 |
H25 |
C17 |
C18 |
C1 |
160.1 |
169.1 |
C18 |
C17 |
H25 |
H24 |
119.6 |
120.5 |
H25 |
C17 |
C18 |
H26 |
280.8 |
289.3 |
H25 |
C17 |
C18 |
H27 |
39.4 |
48.9 |
C17 |
C18 |
H26 |
C1 |
235.4 |
239.3 |
H26 |
C18 |
C17 |
H24 |
40.6 |
49.9 |
H26 |
C18 |
C17 |
H25 |
280.8 |
289.3 |
C17 |
C18 |
H26 |
H27 |
117.7 |
119.7 |
H26 |
C18 |
C1 |
C |
50.0 |
43.0 |
C1 |
C18 |
H26 |
H27 |
242.3 |
240.3 |
C17 |
C18 |
H27 |
C1 |
124.6 |
120.7 |
H27 |
C18 |
C17 |
H24 |
159.1 |
169.5 |
H27 |
C18 |
C17 |
H25 |
39.4 |
48.9 |
C17 |
C18 |
H27 |
H26 |
242.3 |
240.4 |
H27 |
C18 |
C1 |
C |
291.5 |
283.4 |
C1 |
C18 |
H27 |
H26 |
117.7 |
119.7 |
C1 |
C |
H28 |
H29 |
120.0 |
120.0 |
C1 |
C |
H28 |
H30 |
240.0 |
240.1 |
H29 |
C |
H28 |
H30 |
120.0 |
120.0 |
C1 |
C |
H29 |
H28 |
240.0 |
240.0 |
C1 |
C |
H29 |
H30 |
120.0 |
120.0 |
H28 |
C |
H29 |
H30 |
240.0 |
240.0 |
C1 |
C |
H30 |
H28 |
120.0 |
119.9 |
C1 |
C |
H30 |
H29 |
240.0 |
239.9 |
H28 |
C |
H30 |
H29 |
120.0 |
120.0 |