PDB Chemical Component A6G

Ideal Model

Chemical Description

Name 2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1,5-anhydro-2-deoxy-6-O-phosphono-D-altritol
Synonyms ((2R,3S,4S,5R)-5-(2-amino-6-oxo-1H-purin-9(6H)-yl)-3,4-dihydroxytetrahydro-2H-pyran-2-yl)methyl dihydrogen phosphate
Formula C11 H16 N5 O8 P
Formal charge 0
Molecular weight 377.247 g/mol
Component type RNA linking
Nonstandard Parent Id G

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3' HOP3
Bond count 43
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-1,5-anhydro-2-deoxy-6-O-phosphono-D-altritol
Systematic name (OpenEye OEToolkits) [(2R,3S,4S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@@H]3CO[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3CO[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc2c(n1[C@@H]3CO[C@@H]([C@H]([C@H]3O)O)COP(=O)(O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C11H16N5O8P/c12-11-14-9-6(10(19)15-11)13-3-16(9)4-1-23-5(8(18)7(4)17)2-24-25(20,21)22/h3-5,7-8,17-18H,1-2H2,(H2,20,21,22)(H3,12,14,15,19)/t4-,5-,7+,8-/m1/s1
InChIKey descriptor SFDKINXNYLIXHS-HXOWADHMSA-N

Status Information

Last modified 2020-06-17
Created 2010-08-26
Release status REL
Model PDB code 3OK2
Processing site RCSB