PDB Chemical Component A6G
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A6G
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.472 |
1.479 |
| O5' |
P |
1.628 |
1.610 |
| P |
OP2 |
1.480 |
1.610 |
| P |
OP3 |
1.588 |
1.610 |
| C2 |
N1 |
1.383 |
1.363 |
| C6 |
N1 |
1.438 |
1.352 |
| N1 |
HN1 |
1.000 |
0.970 |
| N3 |
C2 |
1.321 |
1.314 |
| C2 |
N2 |
1.357 |
1.373 |
| N2 |
HN2 |
1.000 |
0.969 |
| N2 |
HN2A |
1.000 |
0.971 |
| C4 |
N3 |
1.373 |
1.338 |
| N9 |
C4 |
1.401 |
1.369 |
| C4 |
C5 |
1.367 |
1.400 |
| N7 |
C5 |
1.402 |
1.355 |
| C5 |
C6 |
1.424 |
1.415 |
| C6 |
O6 |
1.242 |
1.219 |
| C8 |
N7 |
1.321 |
1.301 |
| N9 |
C8 |
1.389 |
1.364 |
| C8 |
H8 |
1.080 |
1.080 |
| C1' |
N9 |
1.493 |
1.466 |
| C2' |
C1' |
1.542 |
1.531 |
| C1' |
C6' |
1.514 |
1.531 |
| C1' |
H1' |
1.100 |
1.090 |
| C3' |
C2' |
1.507 |
1.532 |
| O2' |
C2' |
1.447 |
1.429 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| O3' |
C3' |
1.403 |
1.429 |
| C3' |
C4' |
1.531 |
1.531 |
| C3' |
H3' |
1.099 |
1.090 |
| O3' |
HO3' |
0.950 |
0.968 |
| C5' |
C4' |
1.538 |
1.529 |
| C4' |
O4' |
1.413 |
1.429 |
| C4' |
H4' |
1.100 |
1.090 |
| O4' |
C6' |
1.451 |
1.429 |
| C5' |
O5' |
1.434 |
1.430 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| C6' |
H6' |
1.100 |
1.090 |
| C6' |
H6'A |
1.100 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.967 |
Bond Angles for A6G
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
114.6 |
109.5 |
| OP1 |
P |
OP3 |
110.0 |
109.5 |
| O5' |
P |
OP2 |
105.2 |
109.5 |
| O5' |
P |
OP3 |
102.3 |
109.5 |
| OP2 |
P |
OP3 |
114.4 |
109.4 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| P |
OP3 |
HOP3 |
109.5 |
114.1 |
| C2 |
N1 |
HN1 |
118.8 |
119.9 |
| C6 |
N1 |
HN1 |
118.8 |
119.8 |
| C2 |
N2 |
HN2 |
120.0 |
120.0 |
| C2 |
N2 |
HN2A |
120.0 |
120.0 |
| HN2 |
N2 |
HN2A |
120.0 |
120.0 |
| C4 |
C5 |
C6 |
117.4 |
118.5 |
| C5 |
C6 |
O6 |
124.9 |
120.8 |
| N9 |
C8 |
H8 |
123.7 |
125.1 |
| C2' |
C1' |
C6' |
110.2 |
109.2 |
| C2' |
C1' |
H1' |
112.2 |
109.6 |
| C6' |
C1' |
H1' |
103.8 |
109.5 |
| C1' |
C6' |
O4' |
108.8 |
109.4 |
| C1' |
C6' |
H6' |
109.7 |
109.5 |
| C1' |
C6' |
H6'A |
109.7 |
109.4 |
| C3' |
C2' |
H2' |
106.2 |
109.5 |
| O2' |
C2' |
H2' |
112.5 |
109.5 |
| O3' |
C3' |
C4' |
106.7 |
109.5 |
| O3' |
C3' |
H3' |
110.1 |
109.6 |
| C4' |
C3' |
H3' |
110.2 |
109.5 |
| C3' |
C4' |
O4' |
111.5 |
109.4 |
| C3' |
C4' |
H4' |
106.6 |
109.5 |
| C5' |
C4' |
H4' |
110.4 |
109.5 |
| O4' |
C4' |
H4' |
109.7 |
109.5 |
| C4' |
O4' |
C6' |
116.8 |
114.2 |
| O4' |
C6' |
H6' |
109.7 |
109.5 |
| O4' |
C6' |
H6'A |
109.7 |
109.5 |
| O5' |
C5' |
H5' |
110.6 |
109.5 |
| O5' |
C5' |
H5'A |
110.5 |
109.5 |
| H5' |
C5' |
H5'A |
108.4 |
109.5 |
| H6' |
C6' |
H6'A |
109.3 |
109.5 |
Torsion Angles for A6G
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
P |
OP1 |
OP2 |
117.8 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
248.4 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
130.6 |
119.9 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
59.9 |
| OP1 |
P |
O5' |
OP2 |
236.5 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
116.6 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
240.2 |
240.1 |
| O5' |
P |
OP2 |
HOP2 |
239.9 |
59.9 |
| O5' |
P |
OP3 |
HOP3 |
116.1 |
180.0 |
| OP1 |
P |
OP2 |
OP3 |
231.6 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
111.5 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
229.3 |
300.0 |
| OP1 |
P |
OP3 |
OP2 |
130.7 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
246.8 |
240.0 |
| OP3 |
P |
OP2 |
HOP2 |
128.4 |
299.9 |
| C6 |
N1 |
C2 |
HN1 |
180.0 |
180.4 |
| C2 |
N1 |
C6 |
HN1 |
180.0 |
179.6 |
| N3 |
C2 |
N1 |
HN1 |
186.2 |
179.9 |
| N3 |
C2 |
N2 |
HN2 |
0.0 |
180.0 |
| N3 |
C2 |
N2 |
HN2A |
180.0 |
360.0 |
| N2 |
C2 |
N1 |
HN1 |
3.2 |
359.9 |
| HN2 |
N2 |
C2 |
HN2A |
180.0 |
180.0 |
| C2 |
N2 |
HN2 |
HN2A |
180.0 |
180.0 |
| C2 |
N2 |
HN2A |
HN2 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
O6 |
181.6 |
180.0 |
| C5 |
C6 |
N1 |
HN1 |
176.2 |
179.8 |
| O6 |
C6 |
N1 |
HN1 |
353.5 |
0.3 |
| C1' |
N9 |
C8 |
H8 |
358.6 |
0.0 |
| C6' |
C1' |
C2' |
H1' |
115.2 |
120.0 |
| C2' |
C1' |
C6' |
O4' |
56.7 |
57.6 |
| C2' |
C1' |
C6' |
H6' |
176.7 |
177.5 |
| C2' |
C1' |
C6' |
H6'A |
296.7 |
297.6 |
| C2' |
C1' |
C6' |
H1' |
239.7 |
239.9 |
| C4' |
O4' |
C6' |
C1' |
299.7 |
298.9 |
| O4' |
C6' |
C1' |
H6' |
240.0 |
240.0 |
| O4' |
C6' |
C1' |
H6'A |
120.0 |
119.9 |
| H6' |
C6' |
C1' |
H6'A |
240.0 |
239.9 |
| C2' |
C1' |
H1' |
C6' |
119.0 |
119.8 |
| H1' |
C1' |
C6' |
O4' |
177.0 |
177.6 |
| H1' |
C1' |
C6' |
H6' |
297.0 |
297.6 |
| H1' |
C1' |
C6' |
H6'A |
57.0 |
57.7 |
| C3' |
C2' |
C1' |
C6' |
307.9 |
303.1 |
| C3' |
C2' |
C1' |
H1' |
192.7 |
183.1 |
| O2' |
C2' |
C3' |
H2' |
122.0 |
120.2 |
| O2' |
C2' |
C1' |
C6' |
67.7 |
63.0 |
| O2' |
C2' |
C1' |
H1' |
312.6 |
303.0 |
| C3' |
C2' |
O2' |
H2' |
241.8 |
239.8 |
| H2' |
C2' |
C1' |
C6' |
189.7 |
183.2 |
| H2' |
C2' |
C1' |
H1' |
74.5 |
63.2 |
| HO2' |
O2' |
C2' |
H2' |
59.3 |
59.8 |
| O3' |
C3' |
C2' |
H2' |
289.0 |
296.8 |
| C4' |
C3' |
O3' |
H3' |
240.4 |
239.8 |
| O3' |
C3' |
C4' |
O4' |
188.7 |
182.6 |
| O3' |
C3' |
C4' |
H4' |
308.4 |
302.5 |
| C4' |
C3' |
C2' |
H2' |
166.9 |
176.8 |
| O3' |
C3' |
C4' |
H3' |
119.5 |
120.2 |
| C5' |
C4' |
C3' |
H4' |
120.2 |
120.0 |
| O4' |
C4' |
C3' |
H4' |
240.3 |
240.1 |
| C3' |
C4' |
O4' |
C6' |
53.8 |
61.1 |
| H3' |
C3' |
C2' |
H2' |
48.0 |
56.9 |
| O3' |
C3' |
H3' |
C4' |
242.6 |
239.8 |
| H3' |
C3' |
C4' |
O4' |
69.2 |
62.4 |
| H3' |
C3' |
C4' |
H4' |
188.9 |
182.3 |
| HO3' |
O3' |
C3' |
C4' |
305.8 |
299.7 |
| HO3' |
O3' |
C3' |
H3' |
65.4 |
59.9 |
| C5' |
C4' |
C3' |
H3' |
309.0 |
302.3 |
| C3' |
C4' |
C5' |
H4' |
242.1 |
240.0 |
| O4' |
C4' |
C5' |
H4' |
119.8 |
120.0 |
| C5' |
C4' |
O4' |
C6' |
175.8 |
181.1 |
| C1' |
C6' |
O4' |
C4' |
299.7 |
298.9 |
| O4' |
C4' |
C3' |
H3' |
69.2 |
62.4 |
| C3' |
C4' |
O4' |
H4' |
117.8 |
119.9 |
| C5' |
C4' |
O4' |
H4' |
239.8 |
239.9 |
| C4' |
O4' |
C6' |
H6' |
179.7 |
178.9 |
| C4' |
O4' |
C6' |
H6'A |
59.7 |
58.8 |
| H4' |
C4' |
C3' |
H3' |
188.9 |
182.3 |
| C3' |
C4' |
H4' |
O4' |
239.1 |
240.1 |
| H4' |
C4' |
O4' |
C6' |
296.0 |
301.2 |
| O4' |
C6' |
C1' |
H1' |
177.0 |
177.6 |
| C1' |
C6' |
O4' |
H6' |
120.0 |
120.0 |
| C1' |
C6' |
O4' |
H6'A |
240.0 |
240.1 |
| C6' |
O4' |
C4' |
H4' |
296.0 |
301.2 |
| H6' |
C6' |
O4' |
H6'A |
120.0 |
120.1 |
| C5' |
O5' |
P |
OP2 |
168.4 |
65.0 |
| C5' |
O5' |
P |
OP3 |
288.2 |
185.0 |
| O5' |
C5' |
C4' |
H4' |
185.9 |
305.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
305.9 |
65.0 |
| O5' |
C5' |
H5' |
H5'A |
238.7 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
65.9 |
185.0 |
| O5' |
C5' |
H5'A |
H5' |
121.3 |
120.0 |
| H6' |
C6' |
C1' |
H1' |
297.0 |
297.6 |
| C1' |
C6' |
H6' |
O4' |
240.5 |
240.1 |
| C1' |
C6' |
H6' |
H6'A |
120.3 |
120.0 |
| O4' |
C6' |
H6' |
H6'A |
239.7 |
239.9 |
| H6'A |
C6' |
C1' |
H1' |
57.0 |
57.7 |
| C1' |
C6' |
H6'A |
O4' |
119.5 |
119.9 |
| C1' |
C6' |
H6'A |
H6' |
239.7 |
240.0 |
| O4' |
C6' |
H6'A |
H6' |
120.3 |
120.1 |
| HOP2 |
OP2 |
P |
OP3 |
128.4 |
299.9 |