PDB Chemical Component A6A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A6A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.495 |
1.480 |
| P |
O5' |
1.600 |
1.610 |
| P |
OP2 |
1.496 |
1.611 |
| P |
OP3 |
1.618 |
1.609 |
| C6 |
N1 |
1.368 |
1.329 |
| N1 |
C2 |
1.341 |
1.321 |
| N3 |
C2 |
1.321 |
1.317 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
N3 |
1.369 |
1.330 |
| N9 |
C4 |
1.393 |
1.372 |
| C5 |
C4 |
1.394 |
1.405 |
| N7 |
C5 |
1.378 |
1.355 |
| C5 |
C6 |
1.391 |
1.405 |
| N6 |
C6 |
1.331 |
1.385 |
| N6 |
HN6 |
1.000 |
0.971 |
| N6 |
HN6A |
1.000 |
0.970 |
| C8 |
N7 |
1.314 |
1.302 |
| C8 |
N9 |
1.364 |
1.363 |
| C8 |
H8 |
1.080 |
1.079 |
| C1' |
N9 |
1.484 |
1.465 |
| C2' |
C1' |
1.562 |
1.532 |
| C1' |
C6' |
1.507 |
1.531 |
| C1' |
H1' |
1.100 |
1.090 |
| C3' |
C2' |
1.509 |
1.532 |
| O2' |
C2' |
1.438 |
1.429 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| O3' |
C3' |
1.400 |
1.429 |
| C3' |
C4' |
1.535 |
1.531 |
| C3' |
H3' |
1.100 |
1.089 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
C4' |
1.507 |
1.530 |
| C4' |
O4' |
1.405 |
1.429 |
| C4' |
H4' |
1.100 |
1.089 |
| O4' |
C6' |
1.432 |
1.429 |
| O5' |
C5' |
1.409 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| C6' |
H6' |
1.100 |
1.091 |
| C6' |
H6'A |
1.100 |
1.091 |
| OP2 |
HOP2 |
0.949 |
0.967 |
| OP3 |
HOP3 |
0.949 |
0.967 |
Bond Angles for A6A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
116.1 |
109.4 |
| OP1 |
P |
OP3 |
105.4 |
109.5 |
| O5' |
P |
OP2 |
107.4 |
109.5 |
| O5' |
P |
OP3 |
103.8 |
109.5 |
| P |
O5' |
C5' |
122.3 |
123.0 |
| OP2 |
P |
OP3 |
112.1 |
109.4 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| N1 |
C2 |
H2 |
115.4 |
118.8 |
| N3 |
C2 |
H2 |
115.5 |
118.7 |
| HN6 |
N6 |
HN6A |
109.5 |
120.0 |
| N9 |
C8 |
H8 |
122.6 |
125.0 |
| C2' |
C1' |
C6' |
106.0 |
109.1 |
| C2' |
C1' |
H1' |
110.5 |
109.6 |
| C6' |
C1' |
H1' |
111.2 |
109.5 |
| C1' |
C6' |
O4' |
108.6 |
109.5 |
| C1' |
C6' |
H6' |
109.7 |
109.4 |
| C1' |
C6' |
H6'A |
109.7 |
109.5 |
| C3' |
C2' |
H2' |
108.0 |
109.5 |
| O2' |
C2' |
H2' |
113.7 |
109.5 |
| O3' |
C3' |
C4' |
111.1 |
109.5 |
| O3' |
C3' |
H3' |
107.9 |
109.7 |
| C4' |
C3' |
H3' |
107.4 |
109.5 |
| C3' |
C4' |
O4' |
104.3 |
109.4 |
| C3' |
C4' |
H4' |
109.1 |
109.5 |
| C5' |
C4' |
H4' |
109.5 |
109.5 |
| O4' |
C4' |
H4' |
117.3 |
109.5 |
| C4' |
O4' |
C6' |
110.6 |
114.0 |
| O4' |
C6' |
H6' |
109.8 |
109.5 |
| O4' |
C6' |
H6'A |
109.8 |
109.5 |
| O5' |
C5' |
H5' |
109.9 |
109.4 |
| O5' |
C5' |
H5'A |
109.9 |
109.5 |
| H5' |
C5' |
H5'A |
109.0 |
109.5 |
| H6' |
C6' |
H6'A |
109.2 |
109.5 |
Torsion Angles for A6A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
P |
OP1 |
OP2 |
123.3 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
248.1 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
124.8 |
119.9 |
| OP1 |
P |
OP2 |
HOP2 |
360.0 |
180.0 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
59.9 |
| OP1 |
P |
O5' |
OP2 |
231.8 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
113.0 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
241.1 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
234.6 |
60.0 |
| O5' |
P |
OP3 |
HOP3 |
117.3 |
180.0 |
| P |
O5' |
C5' |
H5' |
40.8 |
60.0 |
| P |
O5' |
C5' |
H5'A |
280.8 |
300.0 |
| OP1 |
P |
OP2 |
OP3 |
238.8 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
113.3 |
120.0 |
| OP2 |
P |
O5' |
C5' |
184.8 |
65.0 |
| OP2 |
P |
OP3 |
HOP3 |
232.8 |
300.0 |
| OP1 |
P |
OP3 |
OP2 |
127.2 |
119.9 |
| O5' |
P |
OP3 |
OP2 |
244.5 |
240.0 |
| OP3 |
P |
O5' |
C5' |
303.6 |
185.0 |
| OP3 |
P |
OP2 |
HOP2 |
121.2 |
300.0 |
| C6 |
N1 |
C2 |
H2 |
178.2 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
181.0 |
180.0 |
| C1' |
N9 |
C8 |
H8 |
0.9 |
360.0 |
| C6' |
C1' |
C2' |
H1' |
120.6 |
119.9 |
| C2' |
C1' |
C6' |
O4' |
57.7 |
57.6 |
| C2' |
C1' |
C6' |
H6' |
177.7 |
177.6 |
| C2' |
C1' |
C6' |
H6'A |
297.7 |
297.6 |
| C2' |
C1' |
C6' |
H1' |
239.9 |
240.0 |
| C4' |
O4' |
C6' |
C1' |
283.8 |
298.8 |
| O4' |
C6' |
C1' |
H6' |
240.0 |
240.0 |
| O4' |
C6' |
C1' |
H6'A |
120.0 |
120.0 |
| H6' |
C6' |
C1' |
H6'A |
240.0 |
240.0 |
| C2' |
C1' |
H1' |
C6' |
117.4 |
119.7 |
| H1' |
C1' |
C6' |
O4' |
177.8 |
177.6 |
| H1' |
C1' |
C6' |
H6' |
297.8 |
297.6 |
| H1' |
C1' |
C6' |
H6'A |
57.8 |
57.6 |
| C3' |
C2' |
C1' |
C6' |
313.2 |
303.0 |
| C3' |
C2' |
C1' |
H1' |
192.6 |
183.1 |
| O2' |
C2' |
C3' |
H2' |
122.6 |
120.2 |
| O2' |
C2' |
C1' |
C6' |
71.7 |
63.0 |
| O2' |
C2' |
C1' |
H1' |
311.1 |
303.1 |
| C3' |
C2' |
O2' |
H2' |
241.0 |
239.8 |
| H2' |
C2' |
C1' |
C6' |
194.3 |
183.1 |
| H2' |
C2' |
C1' |
H1' |
73.7 |
63.2 |
| HO2' |
O2' |
C2' |
H2' |
62.0 |
59.8 |
| O3' |
C3' |
C2' |
H2' |
290.3 |
296.7 |
| C4' |
C3' |
O3' |
H3' |
242.5 |
239.8 |
| O3' |
C3' |
C4' |
O4' |
179.0 |
182.5 |
| O3' |
C3' |
C4' |
H4' |
305.1 |
302.5 |
| C4' |
C3' |
C2' |
H2' |
165.6 |
176.9 |
| O3' |
C3' |
C4' |
H3' |
117.8 |
120.3 |
| C5' |
C4' |
C3' |
H4' |
121.9 |
120.0 |
| O4' |
C4' |
C3' |
H4' |
233.9 |
240.0 |
| C3' |
C4' |
O4' |
C6' |
71.3 |
61.2 |
| H3' |
C3' |
C2' |
H2' |
48.1 |
57.0 |
| O3' |
C3' |
H3' |
C4' |
240.2 |
239.8 |
| H3' |
C3' |
C4' |
O4' |
61.1 |
62.2 |
| H3' |
C3' |
C4' |
H4' |
187.2 |
182.3 |
| HO3' |
O3' |
C3' |
C4' |
305.1 |
299.6 |
| HO3' |
O3' |
C3' |
H3' |
62.6 |
59.8 |
| P |
O5' |
C5' |
C4' |
160.7 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
309.1 |
302.3 |
| C3' |
C4' |
C5' |
H4' |
238.3 |
240.0 |
| O4' |
C4' |
C5' |
H4' |
126.0 |
120.0 |
| C5' |
C4' |
O4' |
C6' |
189.5 |
181.1 |
| C1' |
C6' |
O4' |
C4' |
283.8 |
298.8 |
| O4' |
C4' |
C3' |
H3' |
61.1 |
62.2 |
| C3' |
C4' |
O4' |
H4' |
120.8 |
120.0 |
| C5' |
C4' |
O4' |
H4' |
239.0 |
240.0 |
| C4' |
O4' |
C6' |
H6' |
163.9 |
178.9 |
| C4' |
O4' |
C6' |
H6'A |
43.8 |
58.9 |
| H4' |
C4' |
C3' |
H3' |
187.2 |
182.3 |
| C3' |
C4' |
H4' |
O4' |
241.8 |
240.0 |
| H4' |
C4' |
O4' |
C6' |
310.5 |
301.1 |
| O4' |
C6' |
C1' |
H1' |
177.8 |
177.6 |
| C1' |
C6' |
O4' |
H6' |
120.0 |
120.0 |
| C1' |
C6' |
O4' |
H6'A |
240.0 |
240.0 |
| C6' |
O4' |
C4' |
H4' |
310.5 |
301.1 |
| H6' |
C6' |
O4' |
H6'A |
120.0 |
120.0 |
| C5' |
O5' |
P |
OP2 |
184.8 |
65.0 |
| C5' |
O5' |
P |
OP3 |
303.6 |
185.0 |
| O5' |
C5' |
C4' |
H4' |
181.8 |
305.0 |
| H5' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
301.8 |
65.0 |
| O5' |
C5' |
H5' |
H5'A |
239.4 |
240.0 |
| H5'A |
C5' |
C4' |
H4' |
61.8 |
185.0 |
| O5' |
C5' |
H5'A |
H5' |
120.6 |
120.0 |
| H6' |
C6' |
C1' |
H1' |
297.8 |
297.6 |
| C1' |
C6' |
H6' |
O4' |
240.7 |
240.0 |
| C1' |
C6' |
H6' |
H6'A |
120.3 |
120.0 |
| O4' |
C6' |
H6' |
H6'A |
239.6 |
240.0 |
| H6'A |
C6' |
C1' |
H1' |
57.8 |
57.6 |
| C1' |
C6' |
H6'A |
O4' |
119.3 |
120.0 |
| C1' |
C6' |
H6'A |
H6' |
239.7 |
240.0 |
| O4' |
C6' |
H6'A |
H6' |
120.4 |
120.0 |
| HOP2 |
OP2 |
P |
OP3 |
121.2 |
300.0 |