C11 H16 N5 O7 P
361.248
A
2-(6-amino-9H-purin-9-yl)-1,5-anhydro-2-deoxy-6-O-phosphono-D-altritol
N
0
Corina
N
2010-08-26
3OK2
N
2021-03-13
RCSB
REL
((2R,3S,4S,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydro-2H-pyran-2-yl)methyl dihydrogen phosphate
ATOMN
A6A
RNA linking
P
0
-9.601
-0.703
1.990
1
N
P
A6A
N
4.764
0.980
0.120
1
N
P
N1
0
-3.814
5.562
4.836
1
Y
N1
A6A
N
-5.812
0.992
0.110
2
N
N
C2
0
-4.832
6.434
4.861
1
Y
C2
A6A
N
-5.625
-0.223
0.593
3
N
C
N3
0
-6.110
6.230
4.597
1
Y
N3
A6A
N
-4.430
-0.765
0.701
4
N
N
C4
0
-6.323
4.914
4.284
1
Y
C4
A6A
N
-3.346
-0.095
0.321
5
N
C
C5
0
-5.366
3.902
4.230
1
Y
C5
A6A
N
-3.492
1.202
-0.199
6
N
C
C6
0
-4.054
4.249
4.534
1
Y
C6
A6A
N
-4.788
1.736
-0.295
7
N
C
N6
0
-3.077
3.345
4.528
1
N
N6
A6A
N
-4.994
3.009
-0.799
8
N
N
N7
0
-5.914
2.687
3.881
1
Y
N7
A6A
N
-2.251
1.652
-0.503
9
N
N
C8
0
-7.185
2.973
3.709
1
Y
C8
A6A
N
-1.374
0.736
-0.210
10
N
C
N9
0
-7.510
4.281
3.921
1
Y
N9
A6A
N
-2.000
-0.361
0.302
11
N
N
C1'
0
-8.872
4.861
3.812
1
N
C1'
A6A
N
-1.355
-1.598
0.750
12
R
C
C2'
0
-9.345
5.041
2.334
1
N
C2'
A6A
N
-0.738
-2.318
-0.453
13
S
C
O2'
0
-10.485
5.917
2.327
1
N
O2'
A6A
N
-0.167
-3.557
-0.027
14
N
O
C3'
0
-9.782
3.758
1.671
1
N
C3'
A6A
N
0.352
-1.431
-1.062
15
S
C
O3'
0
-10.354
4.004
0.417
1
N
O3'
A6A
N
0.984
-2.124
-2.140
16
N
O
C4'
0
-10.737
2.955
2.565
1
N
C4'
A6A
N
1.391
-1.103
0.014
17
R
C
O4'
0
-10.022
2.770
3.760
1
N
O4'
A6A
N
0.747
-0.462
1.117
18
N
O
C5'
0
-10.966
1.553
2.061
1
N
C5'
A6A
N
2.452
-0.168
-0.570
19
N
C
O5'
0
-9.722
0.892
2.030
1
N
O5'
A6A
N
3.483
0.045
0.396
20
N
O
C6'
0
-9.915
4.003
4.480
1
N
C6'
A6A
N
-0.250
-1.263
1.755
21
N
C
OP1
0
-10.337
-1.278
0.823
1
N
OP1
A6A
N
5.452
0.524
-1.108
22
N
O
OP2
0
-8.147
-1.043
2.083
1
N
OP2
A6A
N
4.285
2.506
-0.069
23
N
O
OP3
0
-10.424
-1.184
3.297
1
N
OP3
A6A
Y
5.776
0.887
1.368
24
N
O
H2
0
-4.570
7.445
5.136
1
N
H2
A6A
N
-6.485
-0.794
0.911
25
N
H
HN6
0
-2.212
3.786
4.768
1
N
HN6
A6A
N
-4.238
3.543
-1.091
26
N
H
HN6A
0
-3.282
2.629
5.195
0
N
HN6A
A6A
N
-5.893
3.367
-0.860
27
N
H
H8
0
-7.915
2.231
3.422
1
N
H8
A6A
N
-0.308
0.831
-0.351
28
N
H
H1'
0
-8.782
5.838
4.309
1
N
H1'
A6A
N
-2.094
-2.244
1.223
29
N
H
H2'
0
-8.482
5.435
1.778
1
N
H2'
A6A
N
-1.510
-2.510
-1.198
30
N
H
HO2'
0
-10.787
6.038
1.434
0
N
HO2'
A6A
N
0.242
-4.067
-0.739
31
N
H
H3'
0
-8.881
3.146
1.518
1
N
H3'
A6A
N
-0.094
-0.508
-1.431
32
N
H
HO3'
0
-10.620
3.181
0.023
0
N
HO3'
A6A
Y
1.687
-1.620
-2.573
33
N
H
H4'
0
-11.699
3.484
2.630
1
N
H4'
A6A
N
1.865
-2.023
0.354
34
N
H
H5'
0
-11.657
1.021
2.732
1
N
H5'
A6A
N
2.881
-0.619
-1.465
35
N
H
H5'A
0
-11.400
1.583
1.051
0
N
H5'A
A6A
N
1.993
0.786
-0.828
36
N
H
H6'
0
-9.620
3.802
5.520
1
N
H6'
A6A
N
-0.677
-0.712
2.594
37
N
H
H6'A
0
-10.884
4.523
4.473
0
N
H6'A
A6A
N
0.203
-2.186
2.119
38
N
H
HOP2
0
-7.904
-1.598
1.352
0
N
HOP2
A6A
N
3.825
2.872
0.699
39
N
H
HOP3
0
-11.168
-1.709
3.028
0
N
HOP3
A6A
Y
6.573
1.426
1.270
40
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
Y
5
N
doub
Y
6
N
sing
Y
7
N
doub
N
8
N
sing
Y
9
N
sing
Y
10
N
sing
Y
11
N
doub
Y
12
N
sing
Y
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
doub
Y
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
RCSB
RCSB
RCSB
RCSB
O=P(O)(O)OCC3OCC(n1cnc2c(ncnc12)N)C(O)C3O
Nc1ncnc2n(cnc12)[C@@H]3CO[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
Nc1ncnc2n(cnc12)[CH]3CO[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
c1nc(c2c(n1)n(cn2)[C@@H]3CO[C@@H]([C@H]([C@H]3O)O)COP(=O)(O)O)N
c1nc(c2c(n1)n(cn2)C3COC(C(C3O)O)COP(=O)(O)O)N
InChI=1S/C11H16N5O7P/c12-10-7-11(14-3-13-10)16(4-15-7)5-1-22-6(9(18)8(5)17)2-23-24(19,20)21/h3-6,8-9,17-18H,1-2H2,(H2,12,13,14)(H2,19,20,21)/t5-,6-,8+,9-/m1/s1
WJZBVGLXFAAYLT-MTSNSDSCSA-N
2-(6-amino-9H-purin-9-yl)-1,5-anhydro-2-deoxy-6-O-phosphono-D-altritol
[(2R,3S,4S,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxan-2-yl]methyl dihydrogen phosphate