PDB Chemical Component A65
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A65
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C4 |
C5 |
1.480 |
1.507 |
C4 |
C2 |
1.465 |
1.359 |
C4 |
C1 |
1.496 |
1.384 |
C5 |
O |
1.430 |
1.430 |
C3 |
S2 |
1.777 |
1.814 |
C2 |
S2 |
1.765 |
1.763 |
C2 |
S1 |
1.441 |
1.720 |
C1 |
N |
1.385 |
1.305 |
C1 |
S |
1.716 |
1.761 |
S1 |
N |
1.444 |
1.696 |
S |
C |
1.790 |
1.814 |
C5 |
H1 |
1.100 |
1.091 |
C5 |
H2 |
1.100 |
1.090 |
C3 |
H3 |
1.100 |
1.090 |
C3 |
H4 |
1.100 |
1.091 |
C3 |
H5 |
1.100 |
1.090 |
O |
H6 |
0.951 |
0.967 |
C |
H8 |
1.100 |
1.090 |
C |
H9 |
1.101 |
1.090 |
C |
H10 |
1.101 |
1.090 |
Bond Angles for A65
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C4 |
C2 |
136.1 |
122.8 |
C5 |
C4 |
C1 |
123.8 |
122.7 |
C4 |
C5 |
O |
110.8 |
109.5 |
C4 |
C5 |
H1 |
109.1 |
109.5 |
C4 |
C5 |
H2 |
109.2 |
109.5 |
C2 |
C4 |
C1 |
100.1 |
114.5 |
C4 |
C2 |
S2 |
130.3 |
127.2 |
C4 |
C2 |
S1 |
113.2 |
105.6 |
C4 |
C1 |
N |
112.7 |
116.7 |
C4 |
C1 |
S |
120.5 |
121.6 |
O |
C5 |
H1 |
109.1 |
109.5 |
O |
C5 |
H2 |
109.1 |
109.5 |
C5 |
O |
H6 |
109.5 |
114.0 |
C3 |
S2 |
C2 |
105.6 |
103.0 |
S2 |
C3 |
H3 |
109.5 |
109.5 |
S2 |
C3 |
H4 |
109.5 |
109.4 |
S2 |
C3 |
H5 |
109.5 |
109.4 |
S2 |
C2 |
S1 |
116.5 |
127.2 |
C2 |
S1 |
N |
105.2 |
95.8 |
N |
C1 |
S |
126.8 |
121.7 |
C1 |
N |
S1 |
108.8 |
107.3 |
C1 |
S |
C |
101.2 |
103.0 |
S |
C |
H8 |
109.5 |
109.5 |
S |
C |
H9 |
109.5 |
109.4 |
S |
C |
H10 |
109.5 |
109.4 |
H1 |
C5 |
H2 |
109.5 |
109.5 |
H3 |
C3 |
H4 |
109.5 |
109.5 |
H3 |
C3 |
H5 |
109.4 |
109.5 |
H4 |
C3 |
H5 |
109.5 |
109.5 |
H8 |
C |
H9 |
109.4 |
109.5 |
H8 |
C |
H10 |
109.4 |
109.5 |
H9 |
C |
H10 |
109.5 |
109.5 |
Torsion Angles for A65
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C4 |
C5 |
C1 |
179.4 |
180.3 |
C5 |
C4 |
C2 |
S2 |
0.4 |
360.0 |
C5 |
C4 |
C2 |
S1 |
180.1 |
180.0 |
C5 |
C4 |
C1 |
N |
180.0 |
180.0 |
C5 |
C4 |
C1 |
S |
359.7 |
0.0 |
O |
C5 |
C4 |
H1 |
239.8 |
240.0 |
O |
C5 |
C4 |
H2 |
120.2 |
120.0 |
C4 |
C5 |
O |
H6 |
180.0 |
180.0 |
H1 |
C5 |
C4 |
H2 |
240.4 |
240.0 |
C5 |
C4 |
C2 |
C1 |
180.5 |
179.7 |
C2 |
C4 |
C5 |
O |
94.0 |
90.0 |
C2 |
C4 |
C5 |
H1 |
214.3 |
210.0 |
C2 |
C4 |
C5 |
H2 |
333.8 |
330.0 |
C2 |
C4 |
C1 |
N |
0.3 |
359.7 |
C2 |
C4 |
C1 |
S |
180.1 |
179.8 |
C3 |
S2 |
C2 |
C4 |
11.1 |
180.0 |
S2 |
C2 |
C4 |
S1 |
180.3 |
180.0 |
C4 |
C2 |
S1 |
N |
0.2 |
359.8 |
C5 |
C4 |
C1 |
C2 |
179.6 |
180.3 |
C1 |
C4 |
C5 |
O |
274.6 |
269.7 |
C1 |
C4 |
C5 |
H1 |
34.8 |
29.7 |
C1 |
C4 |
C5 |
H2 |
154.4 |
149.7 |
C1 |
C4 |
C2 |
S2 |
179.9 |
180.3 |
C1 |
C4 |
C2 |
S1 |
359.7 |
0.3 |
N |
C1 |
C4 |
S |
180.2 |
180.0 |
C4 |
C1 |
N |
S1 |
359.8 |
0.1 |
C4 |
C1 |
S |
C |
180.2 |
180.0 |
O |
C5 |
C4 |
C2 |
94.0 |
90.0 |
O |
C5 |
C4 |
C1 |
274.6 |
269.7 |
C4 |
C5 |
O |
H1 |
120.2 |
120.0 |
C4 |
C5 |
O |
H2 |
239.8 |
240.0 |
H1 |
C5 |
O |
H2 |
119.6 |
120.0 |
C4 |
C2 |
S2 |
C3 |
11.1 |
180.0 |
C3 |
S2 |
C2 |
S1 |
191.4 |
0.0 |
H3 |
C3 |
S2 |
H4 |
240.0 |
240.0 |
H3 |
C3 |
S2 |
H5 |
120.0 |
120.0 |
H4 |
C3 |
S2 |
H5 |
240.0 |
240.0 |
S2 |
C2 |
C4 |
C1 |
179.9 |
180.3 |
C4 |
C2 |
S2 |
S1 |
179.7 |
180.0 |
C2 |
S2 |
C3 |
H3 |
180.0 |
180.0 |
C2 |
S2 |
C3 |
H4 |
300.0 |
300.0 |
C2 |
S2 |
C3 |
H5 |
60.0 |
60.0 |
S2 |
C2 |
S1 |
N |
180.0 |
179.8 |
S1 |
C2 |
C4 |
C1 |
359.7 |
0.3 |
C4 |
C2 |
S1 |
S2 |
180.2 |
180.0 |
C1 |
N |
S1 |
C2 |
0.0 |
0.0 |
C4 |
C1 |
N |
S |
179.7 |
180.0 |
C2 |
S1 |
N |
C1 |
0.0 |
0.0 |
N |
C1 |
S |
C |
360.0 |
0.0 |
C4 |
C1 |
S |
N |
180.3 |
180.0 |
S |
C1 |
N |
S1 |
180.0 |
180.1 |
C1 |
S |
C |
H8 |
180.0 |
180.0 |
C1 |
S |
C |
H9 |
300.0 |
300.0 |
C1 |
S |
C |
H10 |
60.0 |
60.0 |
S1 |
N |
C1 |
S |
180.0 |
180.1 |
H8 |
C |
S |
H9 |
240.0 |
240.0 |
H8 |
C |
S |
H10 |
120.0 |
120.0 |
H9 |
C |
S |
H10 |
240.0 |
240.0 |
H1 |
C5 |
C4 |
C2 |
214.3 |
210.0 |
H1 |
C5 |
C4 |
C1 |
34.8 |
29.7 |
C4 |
C5 |
H1 |
O |
238.8 |
240.0 |
C4 |
C5 |
H1 |
H2 |
119.4 |
120.0 |
O |
C5 |
H1 |
H2 |
240.6 |
240.0 |
H1 |
C5 |
O |
H6 |
59.8 |
60.0 |
H2 |
C5 |
C4 |
C2 |
333.8 |
330.0 |
H2 |
C5 |
C4 |
C1 |
154.4 |
149.7 |
C4 |
C5 |
H2 |
O |
121.3 |
120.0 |
C4 |
C5 |
H2 |
H1 |
240.6 |
240.0 |
O |
C5 |
H2 |
H1 |
119.4 |
120.0 |
H2 |
C5 |
O |
H6 |
300.2 |
300.0 |
H3 |
C3 |
S2 |
C2 |
180.0 |
180.0 |
S2 |
C3 |
H3 |
H4 |
120.0 |
120.0 |
S2 |
C3 |
H3 |
H5 |
240.0 |
240.0 |
H4 |
C3 |
H3 |
H5 |
120.0 |
120.1 |
H4 |
C3 |
S2 |
C2 |
300.0 |
300.0 |
S2 |
C3 |
H4 |
H3 |
240.0 |
240.0 |
S2 |
C3 |
H4 |
H5 |
120.0 |
119.9 |
H3 |
C3 |
H4 |
H5 |
240.0 |
239.9 |
H5 |
C3 |
S2 |
C2 |
60.0 |
60.0 |
S2 |
C3 |
H5 |
H3 |
120.0 |
120.0 |
S2 |
C3 |
H5 |
H4 |
240.0 |
240.0 |
H3 |
C3 |
H5 |
H4 |
120.0 |
120.1 |
H6 |
O |
C5 |
H1 |
59.8 |
60.0 |
H6 |
O |
C5 |
H2 |
300.2 |
300.0 |
S |
C |
H8 |
H9 |
120.0 |
119.9 |
S |
C |
H8 |
H10 |
240.0 |
240.0 |
H9 |
C |
H8 |
H10 |
120.0 |
120.1 |
S |
C |
H9 |
H8 |
240.0 |
240.0 |
S |
C |
H9 |
H10 |
120.0 |
120.0 |
H8 |
C |
H9 |
H10 |
240.0 |
239.9 |
S |
C |
H10 |
H8 |
120.0 |
120.0 |
S |
C |
H10 |
H9 |
240.0 |
240.1 |
H8 |
C |
H10 |
H9 |
120.0 |
120.1 |