PDB Chemical Component A5T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A5T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CLA C36 1.791 1.735
C33 C36 1.384 1.384
C36 C38 1.399 1.384
CLR3 C33 1.788 1.736
C33 C32 1.393 1.383
C38 C37 1.395 1.381
C38 H38 1.080 1.080
C34 C37 1.398 1.383
C37 H37 1.080 1.080
C32 C34 1.390 1.382
C34 H34 1.080 1.081
C29 C32 1.508 1.507
C29 N26 1.458 1.465
C29 H29 1.100 1.090
C29 H29A 1.100 1.090
C28 N26 1.482 1.464
N26 C22 1.356 1.348
C28 C31 1.532 1.530
C28 C30 1.526 1.530
C28 H28 1.100 1.090
C31 C30 1.514 1.530
C31 H31 1.101 1.091
C31 H31A 1.100 1.090
C30 H30 1.100 1.090
C30 H30A 1.100 1.090
C22 C20 1.487 1.464
C22 O25 1.251 1.217
C19 C20 1.369 1.337
C20 C23 1.512 1.506
C23 N27 1.464 1.471
C23 C 1.532 1.538
C23 H23 1.100 1.090
C24 N27 1.446 1.467
N27 HN27 0.999 1.009
C21 C24 1.538 1.522
C24 CA 1.541 1.521
C24 H24 1.100 1.091
C19 C21 1.538 1.502
C21 H21 1.100 1.089
C21 H21A 1.100 1.090
NB C 1.463 1.472
C H 1.099 1.089
C HA 1.100 1.090
NB CA 1.469 1.468
NB HNB 1.000 1.008
CA HAA 1.100 1.090
CA HAB 1.100 1.090
C18 C19 1.521 1.472
C17 C18 1.400 1.398
C16 C18 1.400 1.398
C14 C16 1.395 1.380
C16 H16 1.080 1.079
C13 C14 1.399 1.384
C14 H14 1.080 1.080
C15 C17 1.389 1.379
C17 H17 1.080 1.080
C13 C15 1.394 1.383
C15 H15 1.080 1.080
C12 C13 1.483 1.507
C10 C12 1.342 1.530
C12 H12 1.100 1.089
C12 H12A 1.100 1.090
C10 C8 1.507 1.529
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
O5 C8 1.441 1.429
C8 H8 1.100 1.091
C8 H8A 1.100 1.090
O5 C3 1.393 1.359
C2 C3 1.373 1.387
C3 C6 1.398 1.389
C6 C9 1.393 1.383
C6 F1 1.334 1.351
CL11 C2 1.798 1.736
C2 C4 1.396 1.386
F2 C4 1.340 1.351
C4 C7 1.383 1.384
C7 C9 1.381 1.384
C7 H7 1.080 1.079
C9 H9 1.080 1.080

Bond Angles for A5T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CLA C36 C38 121.3 120.0
C33 C36 C38 119.9 119.9
C36 C38 C37 120.3 120.0
C36 C38 H38 119.8 120.0
CLR3 C33 C32 120.3 120.0
C33 C32 C34 119.9 120.0
C37 C38 H38 119.8 120.0
C38 C37 H37 120.4 120.0
C34 C37 H37 120.4 120.0
C32 C34 H34 119.8 120.0
N26 C29 H29 106.6 109.4
N26 C29 H29A 104.6 109.5
C29 N26 C22 120.7 120.0
H29 C29 H29A 116.7 109.5
C28 N26 C22 127.5 120.0
N26 C22 C20 123.2 120.0
N26 C22 O25 120.4 120.0
C31 C28 C30 59.3 60.0
C31 C28 H28 135.8 117.5
C28 C31 C30 60.1 60.0
C28 C31 H31 130.8 117.5
C28 C31 H31A 135.9 117.5
C30 C28 H28 135.8 117.5
C28 C30 C31 60.5 60.0
C28 C30 H30 130.6 117.5
C28 C30 H30A 135.7 117.5
C30 C31 H31 130.8 117.5
C30 C31 H31A 135.9 117.5
C31 C30 H30 130.6 117.5
C31 C30 H30A 135.7 117.5
H31 C31 H31A 74.8 115.5
H30 C30 H30A 75.1 115.5
O25 C22 C20 116.4 120.0
C22 C20 C23 117.1 119.0
C20 C23 N27 111.6 109.3
C20 C23 C 110.4 107.8
C20 C23 H23 107.3 110.3
N27 C23 C 109.4 108.0
N27 C23 H23 108.4 110.3
C23 N27 HN27 109.0 111.0
C C23 H23 109.6 111.1
C23 C H 109.6 109.8
C23 C HA 109.7 109.7
C24 N27 HN27 108.9 111.1
C21 C24 CA 112.2 111.8
C21 C24 H24 107.5 107.4
CA C24 H24 107.8 108.0
C24 CA NB 112.2 111.0
C24 CA HAA 108.6 109.2
C24 CA HAB 107.9 109.2
C19 C21 H21 107.9 109.4
C19 C21 H21A 106.8 109.0
H21 C21 H21A 113.2 109.2
NB C H 109.6 109.8
NB C HA 109.7 109.8
H C HA 109.1 109.8
CA NB HNB 108.5 111.0
NB CA HAA 108.6 109.2
NB CA HAB 108.0 109.2
HAA CA HAB 111.7 109.2
C14 C16 H16 119.8 120.1
C13 C14 H14 120.0 120.0
C15 C17 H17 119.2 120.1
C13 C15 H15 120.3 120.0
C10 C12 H12 105.9 109.5
C10 C12 H12A 103.3 109.5
H12 C12 H12A 118.8 109.5
C8 C10 H10 105.5 109.5
C8 C10 H10A 102.5 109.5
C10 C8 H8 108.3 109.4
C10 C8 H8A 107.4 109.5
H10 C10 H10A 120.1 109.5
O5 C8 H8 108.3 109.5
O5 C8 H8A 107.4 109.4
H8 C8 H8A 112.4 109.5
O5 C3 C6 125.0 120.1
C3 C6 C9 121.9 120.0
C3 C6 F1 121.0 120.0
F1 C6 C9 117.1 120.0
C6 C9 C7 119.9 120.1
C6 C9 H9 120.0 120.0
CL11 C2 C4 123.4 120.0
C2 C4 C7 121.3 120.0
F2 C4 C7 117.3 120.0
C4 C7 C9 118.5 120.1
C4 C7 H7 120.8 120.0
C9 C7 H7 120.7 119.9
C7 C9 H9 120.0 120.0

Torsion Angles for A5T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C33 C36 CLA C38 181.2 180.3
CLA C36 C38 C37 179.8 180.0
CLA C36 C38 H38 359.8 0.0
CLA C36 C33 C38 178.9 179.7
C33 C36 C38 C37 358.6 359.7
C33 C36 C38 H38 178.7 179.7
C37 C38 C36 H38 180.0 180.0
C36 C38 C37 H37 180.5 180.0
CLR3 C33 C36 C38 180.5 180.3
CLR3 C33 C32 C34 180.5 180.0
C32 C33 C36 C38 1.4 0.3
C33 C32 C34 H34 179.5 180.0
C36 C38 C37 H38 180.0 180.0
C34 C37 C38 H37 180.0 180.1
C36 C38 H38 C37 180.0 180.0
H38 C38 C37 H37 0.5 360.0
C33 C32 C34 C37 359.5 359.8
C34 C37 C38 H38 180.4 180.0
C38 C37 C34 H37 180.0 179.9
H37 C37 C38 H38 0.5 360.0
C32 C34 C37 H37 180.4 180.3
H34 C34 C37 H37 0.4 0.0
C29 C32 C34 H34 359.7 0.0
H29 C29 N26 H29A 124.2 120.0
C28 N26 C29 C22 175.9 180.0
C29 N26 C22 C20 176.4 28.3
C29 N26 C22 O25 356.4 208.4
N26 C29 H29 H29A 243.6 240.0
H29 C29 N26 C22 330.5 321.7
N26 C29 H29A H29 117.5 120.0
H29A C29 N26 C22 206.2 201.7
C28 N26 C29 H29 146.4 141.6
C28 N26 C29 H29A 22.2 21.6
C29 N26 C28 C22 184.4 180.0
C28 N26 C22 C20 1.2 208.3
C28 N26 C22 O25 181.2 28.5
C22 N26 C29 H29 330.5 321.7
C22 N26 C29 H29A 206.2 201.7
O25 C22 N26 C20 180.0 180.1
N26 C22 C20 C23 119.6 340.2
C31 C28 N26 C22 241.3 310.0
C30 C28 C31 H28 125.8 107.5
C31 C28 C30 C31 360.0 -0.0
C31 C28 C30 H30 120.0 107.4
C31 C28 C30 H30A 233.3 252.5
C30 C31 C28 H31 240.0 252.6
C30 C31 C28 H31A 126.7 107.5
C28 C31 C30 H30 240.0 252.5
C28 C31 C30 H30A 126.8 107.5
H31 C31 C28 H31A 246.7 214.9
C30 C28 N26 C22 304.9 18.6
C31 C28 C30 H28 234.1 252.5
C30 C28 C31 C30 -0.0 -0.0
C30 C28 C31 H31 120.0 107.4
C30 C28 C31 H31A 233.3 252.5
C28 C30 C31 H31 240.0 252.5
C28 C30 C31 H31A 126.7 107.5
C31 C30 C28 H30 240.0 252.6
C31 C30 C28 H30A 126.7 107.5
H30 C30 C28 H30A 246.7 214.9
H28 C28 N26 C22 93.1 164.4
C31 C28 H28 C30 90.5 68.6
H28 C28 C31 C30 234.2 252.5
H28 C28 C31 H31 354.2 359.9
H28 C28 C31 H31A 107.5 145.0
H28 C28 C30 C31 125.9 107.5
H28 C28 C30 H30 245.9 214.9
H28 C28 C30 H30A 359.2 360.0
C30 C31 C28 C30 360.0 360.0
C30 C31 C28 H28 234.2 252.5
C28 C31 C30 H31 120.0 107.5
C28 C31 C30 H31A 233.3 252.5
C31 C30 C28 H28 125.9 107.5
C28 C30 C31 H30 120.0 107.5
C28 C30 C31 H30A 233.2 252.5
H31 C31 C30 H31A 113.3 145.0
H30 C30 C31 H30A 113.2 144.9
H31 C31 C28 C30 120.0 107.4
H31 C31 C28 H28 354.2 359.9
C28 C31 H31 C30 277.1 291.4
C28 C31 H31 H31A 138.5 145.8
C30 C31 H31 H31A 221.4 214.3
H31 C31 C30 H30 120.0 144.9
H31 C31 C30 H30A 6.8 0.0
H31A C31 C28 C30 233.3 252.5
H31A C31 C28 H28 107.5 145.0
C28 C31 H31A C30 92.1 68.6
C28 C31 H31A H31 226.1 214.2
C30 C31 H31A H31 134.0 145.6
H31A C31 C30 H30 6.7 360.0
H31A C31 C30 H30A 253.5 215.0
H30 C30 C28 H28 245.9 214.9
C28 C30 H30 C31 276.8 291.4
C28 C30 H30 H30A 138.5 145.8
H30 C30 C31 H31 120.0 144.9
H30 C30 C31 H31A 6.7 360.0
C31 C30 H30 H30A 221.6 214.4
H30A C30 C28 H28 359.2 360.0
C28 C30 H30A C31 92.4 68.6
C28 C30 H30A H30 226.2 214.2
H30A C30 C31 H31 6.8 0.0
H30A C30 C31 H31A 253.5 215.0
C31 C30 H30A H30 133.8 145.6
N26 C22 C20 O25 180.0 180.1
C22 C20 C23 N27 203.6 202.9
C22 C20 C23 C 81.6 85.8
C22 C20 C23 H23 322.2 324.3
N26 C22 O25 C20 180.0 179.9
O25 C22 C20 C23 299.5 160.1
C19 C20 C23 H23 145.2 144.6
N27 C23 C20 C 121.9 117.2
N27 C23 C20 H23 241.4 238.6
C20 C23 N27 HN27 60.5 68.1
C C23 C20 H23 119.4 121.4
C20 C23 C H 183.8 174.1
C20 C23 C HA 303.6 294.9
C20 C23 N27 C 237.5 243.0
C20 C23 N27 H23 118.0 121.4
C C23 N27 H23 240.5 238.4
N27 C23 C H 60.6 56.1
N27 C23 C HA 180.4 176.9
C24 N27 C23 HN27 240.0 236.4
C20 C23 C N27 123.2 118.0
C20 C23 C H23 242.0 239.1
N27 C23 C H23 118.7 121.1
C C23 N27 HN27 183.0 185.2
NB C C23 H 240.0 240.4
NB C C23 HA 120.2 119.6
H C C23 HA 240.2 239.2
C20 C23 H23 N27 239.3 239.2
C20 C23 H23 C 119.9 119.5
N27 C23 H23 C 240.6 240.2
H23 C23 N27 HN27 302.5 306.8
H23 C23 C H 301.8 295.0
H23 C23 C HA 61.7 55.8
C24 N27 C23 C 63.0 61.6
C24 N27 C23 H23 182.5 183.2
C23 N27 C24 HN27 120.0 123.5
HN27 N27 C23 C 183.0 185.2
HN27 N27 C23 H23 302.5 306.8
C21 C24 N27 HN27 304.6 304.4
CA C24 C21 H24 241.7 241.6
C21 C24 CA NB 291.3 289.6
C21 C24 CA HAA 51.3 50.0
C21 C24 CA HAB 172.5 169.2
CA C24 N27 HN27 181.3 179.8
C21 C24 CA H24 118.1 118.0
C24 CA NB HNB 187.5 179.9
NB CA C24 HAA 240.0 239.6
NB CA C24 HAB 118.8 120.4
HAA CA C24 HAB 238.8 240.7
H24 C24 N27 HN27 62.9 61.4
C21 C24 H24 CA 238.9 239.2
H24 C24 CA NB 173.2 171.6
H24 C24 CA HAA 293.2 291.9
H24 C24 CA HAB 54.4 51.2
C19 C21 C24 H24 202.7 199.2
H21 C21 C19 H21A 122.1 119.3
H21 C21 C24 CA 204.4 201.4
H21 C21 C24 H24 322.7 319.8
C19 C21 H21 H21A 242.0 240.8
H21A C21 C24 CA 326.5 320.7
H21A C21 C24 H24 84.8 79.1
C19 C21 H21A H21 118.7 119.4
NB C C23 H23 181.8 175.4
C23 C NB H 120.0 119.6
C23 C NB HA 239.8 240.4
C24 CA NB C 307.4 303.7
H C NB HA 119.8 120.8
H C C23 H23 301.8 295.0
C23 C H HA 120.2 120.7
NB C H HA 239.8 239.2
HA C C23 H23 61.7 55.8
C23 C HA H 239.9 239.2
NB C HA H 120.1 120.8
NB CA C24 H24 173.2 171.6
C24 CA NB HAA 120.0 120.4
C24 CA NB HAB 241.2 239.6
CA NB C H 295.0 301.7
CA NB C HA 175.2 180.8
HAA CA NB HAB 121.2 119.2
HNB NB C H 55.0 65.5
HNB NB C HA 295.1 304.7
HNB NB CA HAA 67.5 59.5
HNB NB CA HAB 306.3 300.3
HAA CA C24 H24 293.2 291.9
C24 CA HAA NB 237.8 238.5
C24 CA HAA HAB 118.9 119.3
HAA CA NB HNB 67.5 59.5
NB CA HAA HAB 241.1 240.8
HAB CA C24 H24 54.4 51.2
C24 CA HAB NB 121.5 121.5
C24 CA HAB HAA 240.8 240.7
HAB CA NB HNB 306.3 300.3
NB CA HAB HAA 119.3 119.3
C18 C19 C21 H21 65.9 71.3
C18 C19 C21 H21A 303.8 312.0
C13 C14 C16 H16 181.9 180.0
H14 C14 C16 H16 1.9 0.0
C15 C13 C14 H14 178.5 179.7
C13 C15 C17 H17 180.3 180.0
H15 C15 C17 H17 0.3 0.1
C12 C13 C14 H14 359.8 360.0
C12 C13 C15 H15 359.1 360.0
H12 C12 C10 H12A 125.6 120.0
C10 C12 H12 H12A 244.6 240.0
C10 C12 H12A H12 116.8 120.0
C8 C10 C12 H12 264.5 60.0
C8 C10 C12 H12A 139.0 300.0
H10 C10 C8 H10A 126.4 120.0
O5 C8 C10 H8 240.0 240.0
O5 C8 C10 H8A 118.4 120.0
H8 C8 C10 H8A 238.4 240.0
H10 C10 C12 H12 24.5 180.0
H10 C10 C12 H12A 259.0 60.0
C8 C10 H10 H10A 245.2 239.9
H10 C10 C8 H8 137.2 180.1
H10 C10 C8 H8A 258.8 300.1
H10A C10 C12 H12 150.9 300.0
H10A C10 C12 H12A 25.4 179.9
C8 C10 H10A H10 116.3 120.0
H10A C10 C8 H8 10.8 60.0
H10A C10 C8 H8A 132.3 180.0
O5 C8 C10 H10 17.2 60.1
O5 C8 C10 H10A 250.7 300.0
C10 C8 O5 H8 120.0 120.0
C10 C8 O5 H8A 241.6 239.9
H8 C8 O5 H8A 121.6 120.0
H8 C8 C10 H10 137.2 180.1
H8 C8 C10 H10A 10.8 60.0
C10 C8 H8 H8A 118.5 120.0
O5 C8 H8 H8A 241.5 240.0
H8A C8 C10 H10 258.8 300.1
H8A C8 C10 H10A 132.3 180.0
C10 C8 H8A H8 241.0 240.0
O5 C8 H8A H8 119.0 120.0
C3 O5 C8 H8 11.9 60.0
C3 O5 C8 H8A 250.3 300.0
O5 C3 C6 C9 180.7 179.9
O5 C3 C6 F1 359.5 360.0
C2 C3 C6 C9 0.9 0.3
F1 C6 C3 C9 178.9 180.0
C3 C6 C9 C7 358.7 0.0
C3 C6 C9 H9 178.7 180.0
C3 C6 C9 F1 178.9 180.0
C4 C7 C9 C6 1.2 359.7
C6 C9 C7 H7 181.2 180.0
C7 C9 C6 H9 180.0 180.0
C3 C6 F1 C9 181.1 180.0
F1 C6 C9 C7 179.8 180.0
F1 C6 C9 H9 359.8 360.0
CL11 C2 C4 C7 180.6 180.0
F2 C4 C2 C7 179.1 180.0
C2 C4 C7 C9 359.1 0.3
C2 C4 C7 H7 179.2 180.0
C2 C4 F2 C7 180.8 180.0
F2 C4 C7 C9 180.0 180.3
F2 C4 C7 H7 0.0 360.0
C6 C9 C7 C4 1.2 359.7
C9 C7 C4 H7 180.0 180.3
C4 C7 C9 H9 181.2 179.7
C6 C9 C7 H9 180.0 180.0
C4 C7 C9 H7 180.0 179.7
C4 C7 H7 C9 180.0 180.3
H7 C7 C9 H9 1.2 360.0
C6 C9 H9 C7 180.0 180.0
H9 C9 C7 H7 1.2 360.0