PDB Chemical Component A5P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A5P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.219	1.429
C1	C2	1.520	1.529
C1	H11	1.116	1.091
C1	H12	1.115	1.090
O1	HO1	0.950	0.967
C2	O2	1.429	1.429
C2	C3	1.531	1.529
C2	HC2	1.115	1.090
O2	HO2	0.950	0.966
C3	O3	1.428	1.429
C3	C4	1.535	1.530
C3	HC3	1.115	1.090
O3	HO3	0.949	0.967
C4	O4	1.429	1.428
C4	C5	1.530	1.528
C4	HC4	1.115	1.090
O4	HO4	0.950	0.968
C5	O5	1.428	1.428
C5	H51	1.115	1.089
C5	H52	1.114	1.090
O5	P	1.599	1.609
P	O1P	1.483	1.480
P	O2P	1.482	1.610
P	O3P	1.487	1.609
O2P	HOP2	0.949	0.967
O3P	HOP3	0.949	0.968

Bond Angles for A5P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	119.2	109.5
O1	C1	H11	108.7	109.4
O1	C1	H12	108.7	109.5
C1	O1	HO1	119.2	106.8
C2	C1	H11	108.7	109.5
C2	C1	H12	108.8	109.5
C1	C2	O2	108.8	109.5
C1	C2	C3	103.1	109.5
C1	C2	HC2	120.9	109.5
H11	C1	H12	101.3	109.5
O2	C2	C3	124.4	109.5
O2	C2	HC2	97.4	109.5
C2	O2	HO2	108.8	106.8
C3	C2	HC2	103.8	109.4
C2	C3	O3	108.2	109.5
C2	C3	C4	109.1	109.5
C2	C3	HC3	113.5	109.5
O3	C3	C4	116.8	109.4
O3	C3	HC3	105.3	109.4
C3	O3	HO3	108.1	106.7
C4	C3	HC3	104.2	109.5
C3	C4	O4	121.7	109.4
C3	C4	C5	101.7	109.5
C3	C4	HC4	106.0	109.5
O4	C4	C5	106.4	109.5
O4	C4	HC4	101.2	109.4
C4	O4	HO4	121.7	106.8
C5	C4	HC4	121.3	109.5
C4	C5	O5	124.6	109.5
C4	C5	H51	106.8	109.5
C4	C5	H52	106.8	109.5
O5	C5	H51	106.9	109.4
O5	C5	H52	106.8	109.4
C5	O5	P	140.2	106.9
H51	C5	H52	102.8	109.4
O5	P	O1P	106.7	109.5
O5	P	O2P	104.6	109.6
O5	P	O3P	107.1	109.5
O1P	P	O2P	113.5	109.4
O1P	P	O3P	112.4	109.4
O2P	P	O3P	111.9	109.5
P	O2P	HOP2	104.6	106.8
P	O3P	HOP3	107.1	106.8

Torsion Angles for A5P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	H11	234.7	240.0
C2	C1	O1	H12	125.3	120.1
O1	C1	C2	O2	126.5	60.0
O1	C1	C2	C3	260.2	180.0
O1	C1	C2	HC2	15.3	299.9
H11	C1	O1	H12	250.5	240.0
O1	C1	C2	H11	125.2	119.9
O1	C1	C2	H12	234.8	240.0
C2	C1	O1	HO1	180.0	180.0
H11	C1	C2	H12	109.5	120.0
O2	C2	C1	C3	226.3	240.0
O2	C2	C1	HC2	111.2	120.0
C1	C2	O2	HO2	180.0	60.0
C3	C2	C1	HC2	244.9	240.0
C1	C2	C3	O3	226.9	300.0
C1	C2	C3	C4	99.0	180.0
C1	C2	C3	HC3	343.3	60.0
O1	C1	H11	C2	228.9	240.0
O1	C1	H11	H12	114.4	120.0
H11	C1	O1	HO1	305.3	300.0
C2	C1	H11	H12	245.5	240.0
H11	C1	C2	O2	1.3	300.0
H11	C1	C2	C3	135.0	60.0
H11	C1	C2	HC2	250.1	180.0
O1	C1	H12	C2	131.2	120.1
O1	C1	H12	H11	245.6	240.1
H12	C1	O1	HO1	54.8	59.9
C2	C1	H12	H11	114.5	120.0
H12	C1	C2	O2	251.7	180.0
H12	C1	C2	C3	25.4	300.0
H12	C1	C2	HC2	140.5	60.0
HO1	O1	C1	C2	180.0	180.0
HO1	O1	C1	H11	305.3	300.0
HO1	O1	C1	H12	54.8	59.9
O2	C2	C1	H11	1.3	300.0
O2	C2	C1	H12	251.7	180.0
C1	C2	O2	C3	121.4	120.0
C1	C2	O2	HC2	233.8	240.0
C3	C2	O2	HC2	112.4	120.0
O2	C2	C3	O3	350.9	60.0
O2	C2	C3	C4	222.9	300.0
O2	C2	C3	HC3	107.3	180.0
C3	C2	C1	H11	135.0	60.0
C3	C2	C1	H12	25.4	300.0
C1	C2	C3	O2	236.0	240.0
C1	C2	C3	HC2	126.8	120.0
O2	C2	C3	HC2	250.8	240.0
C3	C2	O2	HO2	58.6	300.0
O3	C3	C2	C4	128.0	120.0
O3	C3	C2	HC3	243.6	240.0
C2	C3	O3	HO3	180.0	300.0
C4	C3	C2	HC3	115.7	120.0
C2	C3	C4	O4	319.2	300.0
C2	C3	C4	C5	201.3	180.0
C2	C3	C4	HC4	73.6	59.9
HC2	C2	C1	H11	250.1	180.0
HC2	C2	C1	H12	140.5	60.0
C1	C2	HC2	O2	117.1	120.0
C1	C2	HC2	C3	245.3	240.0
O2	C2	HC2	C3	128.2	120.0
HC2	C2	O2	HO2	306.2	180.0
HC2	C2	C3	O3	100.1	180.0
HC2	C2	C3	C4	332.1	60.0
HC2	C2	C3	HC3	216.5	300.0
HO2	O2	C2	C3	58.6	300.0
HO2	O2	C2	HC2	306.2	180.0
O3	C3	C2	HC2	100.1	180.0
C2	C3	O3	C4	236.6	239.9
C2	C3	O3	HC3	121.6	120.0
C4	C3	O3	HC3	245.0	240.1
O3	C3	C4	O4	196.3	180.0
O3	C3	C4	C5	78.4	59.9
O3	C3	C4	HC4	310.7	299.9
C4	C3	C2	HC2	332.1	60.0
C2	C3	C4	O3	123.0	120.0
C2	C3	C4	HC3	238.5	239.9
O3	C3	C4	HC3	115.6	119.9
C4	C3	O3	HO3	303.4	60.0
O4	C4	C3	C5	117.9	120.0
O4	C4	C3	HC4	245.6	240.1
C3	C4	O4	HO4	180.0	300.0
C5	C4	C3	HC4	127.7	120.0
C3	C4	C5	O5	143.5	180.0
C3	C4	C5	H51	268.8	300.0
C3	C4	C5	H52	18.3	60.0
HC3	C3	C2	HC2	216.5	300.0
C2	C3	HC3	O3	241.9	240.0
C2	C3	HC3	C4	118.5	120.1
O3	C3	HC3	C4	236.6	240.1
HC3	C3	O3	HO3	58.4	180.0
HC3	C3	C4	O4	80.7	60.1
HC3	C3	C4	C5	322.8	300.0
HC3	C3	C4	HC4	195.1	180.0
HO3	O3	C3	C4	303.4	60.0
HO3	O3	C3	HC3	58.4	180.0
O4	C4	C3	HC3	80.7	60.1
C3	C4	O4	C5	244.5	239.9
C3	C4	O4	HC4	116.8	119.9
C5	C4	O4	HC4	232.3	240.0
O4	C4	C5	O5	15.2	60.0
O4	C4	C5	H51	140.5	180.0
O4	C4	C5	H52	250.0	300.0
C5	C4	C3	HC3	322.8	300.0
C3	C4	C5	O4	128.3	120.0
C3	C4	C5	HC4	242.9	240.0
O4	C4	C5	HC4	114.6	120.0
C5	C4	O4	HO4	295.5	60.0
O5	C5	C4	H51	234.7	240.0
O5	C5	C4	H52	125.2	120.0
C4	C5	O5	P	150.1	180.0
H51	C5	C4	H52	250.5	240.0
HC4	C4	C3	HC3	195.1	180.0
C3	C4	HC4	O4	232.2	240.1
C3	C4	HC4	C5	114.9	120.1
O4	C4	HC4	C5	242.7	240.0
HC4	C4	O4	HO4	63.2	180.0
HC4	C4	C5	O5	260.6	300.0
HC4	C4	C5	H51	25.9	60.0
HC4	C4	C5	H52	135.4	180.0
HO4	O4	C4	C5	295.5	60.0
HO4	O4	C4	HC4	63.2	180.0
O5	C5	C4	HC4	260.6	300.0
C4	C5	O5	H51	125.3	120.1
C4	C5	O5	H52	234.8	240.0
H51	C5	O5	H52	109.5	119.9
C5	O5	P	O1P	78.9	60.0
C5	O5	P	O2P	199.5	180.0
C5	O5	P	O3P	318.3	300.0
H51	C5	C4	HC4	25.9	60.0
C4	C5	H51	O5	224.6	239.9
C4	C5	H51	H52	112.3	120.0
O5	C5	H51	H52	247.7	240.1
H51	C5	O5	P	24.9	60.0
H52	C5	C4	HC4	135.4	180.0
C4	C5	H52	O5	135.4	120.1
C4	C5	H52	H51	247.7	240.0
O5	C5	H52	H51	112.3	119.9
H52	C5	O5	P	275.3	300.1
P	O5	C5	H51	24.9	60.0
P	O5	C5	H52	275.3	300.1
O1P	P	O5	O2P	239.5	240.0
O1P	P	O5	O3P	120.6	120.0
O2P	P	O5	O3P	241.1	240.0
O5	P	O2P	HOP2	180.0	179.9
O5	P	O3P	HOP3	180.0	300.0
O5	P	O1P	O2P	114.6	120.1
O5	P	O1P	O3P	242.9	240.0
O2P	P	O1P	O3P	128.2	119.9
O1P	P	O2P	HOP2	295.9	300.0
O1P	P	O3P	HOP3	63.1	180.0
O5	P	O2P	O1P	244.1	239.9
O5	P	O2P	O3P	115.6	120.0
O1P	P	O2P	O3P	231.5	240.1
O2P	P	O3P	HOP3	294.1	60.1
O5	P	O3P	O1P	116.9	120.0
O5	P	O3P	O2P	246.0	239.9
O1P	P	O3P	O2P	129.1	119.9
O3P	P	O2P	HOP2	64.4	59.9
HOP2	O2P	P	O3P	64.4	59.9