PDB Chemical Component A5M

Ideal Model

Chemical Description

Name 2'-AMINE-CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H15 N4 O7 P
Formal charge 0
Molecular weight 322.212 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 36
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-amino-2'-deoxycytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-4-amino-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N
SMILES (CACTVS) N[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)N
InChI descriptor InChI=1S/C9H15N4O7P/c10-5-1-2-13(9(15)12-5)8-6(11)7(14)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,14H,3,11H2,(H2,10,12,15)(H2,16,17,18)/t4-,6-,7?,8-/m1/s1
InChIKey descriptor HGDDYYFPFZSUMP-WDGWZIQESA-N

Status Information

Last modified 2011-06-04
Created 2005-03-10
Release status REL
Model PDB code 1YRM
Processing site RCSB