PDB Chemical Component A5E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A5E
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.243 |
1.213 |
| C1 |
C |
1.524 |
1.509 |
| C1 |
C2 |
1.523 |
1.529 |
| C |
N1 |
1.343 |
1.346 |
| C2 |
C3 |
1.504 |
1.505 |
| N1 |
N |
1.338 |
1.398 |
| C3 |
N |
1.285 |
1.295 |
| C3 |
C4 |
1.490 |
1.467 |
| S |
C4 |
1.708 |
1.759 |
| S |
C7 |
1.697 |
1.759 |
| C4 |
C5 |
1.397 |
1.364 |
| C7 |
C6 |
1.373 |
1.337 |
| C5 |
C6 |
1.412 |
1.378 |
| C7 |
H1 |
1.080 |
1.081 |
| C5 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.080 |
1.080 |
| C2 |
H4 |
1.100 |
1.090 |
| C1 |
H5 |
1.100 |
1.089 |
| N1 |
H6 |
1.000 |
0.970 |
| C2 |
H7 |
1.100 |
1.091 |
| C1 |
H8 |
1.100 |
1.090 |
Bond Angles for A5E
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
O |
119.5 |
120.1 |
| O |
C |
N1 |
121.0 |
120.2 |
| C1 |
C |
N1 |
119.5 |
119.6 |
| C |
C1 |
H5 |
108.5 |
109.5 |
| C |
C1 |
H8 |
108.4 |
109.5 |
| C1 |
C2 |
H4 |
108.1 |
109.4 |
| C1 |
C2 |
H7 |
108.0 |
109.4 |
| C |
N1 |
N |
127.5 |
120.6 |
| C |
N1 |
H6 |
116.3 |
119.8 |
| C2 |
C3 |
N |
125.7 |
121.2 |
| C3 |
N |
N1 |
118.5 |
121.5 |
| N |
N1 |
H6 |
116.3 |
119.7 |
| S |
C7 |
H1 |
125.5 |
125.0 |
| C4 |
C5 |
C6 |
112.8 |
114.4 |
| C4 |
C5 |
H2 |
123.6 |
122.8 |
| C7 |
C6 |
C5 |
114.3 |
115.2 |
| C6 |
C7 |
H1 |
125.5 |
125.0 |
| C7 |
C6 |
H3 |
122.8 |
122.4 |
| C6 |
C5 |
H2 |
123.6 |
122.8 |
| C5 |
C6 |
H3 |
122.9 |
122.4 |
| H4 |
C2 |
H7 |
109.4 |
109.4 |
| H5 |
C1 |
H8 |
109.5 |
109.5 |
Torsion Angles for A5E
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C |
O |
N1 |
179.3 |
180.0 |
| O |
C |
C1 |
H5 |
298.3 |
24.5 |
| O |
C |
C1 |
H8 |
57.1 |
264.4 |
| O |
C |
N1 |
N |
177.6 |
184.2 |
| O |
C |
N1 |
H6 |
357.6 |
4.2 |
| O |
C |
C1 |
N1 |
180.7 |
180.0 |
| C |
C1 |
C2 |
H4 |
124.1 |
287.0 |
| C |
C1 |
C2 |
H7 |
242.4 |
167.2 |
| C1 |
C |
N1 |
N |
358.3 |
4.2 |
| C1 |
C |
N1 |
H6 |
178.3 |
184.3 |
| H5 |
C1 |
C |
H8 |
241.2 |
120.1 |
| C1 |
C2 |
C3 |
N |
0.9 |
326.7 |
| H4 |
C2 |
C1 |
H7 |
241.7 |
119.8 |
| C1 |
C |
N1 |
O |
180.7 |
180.0 |
| N1 |
C |
C1 |
H5 |
117.6 |
204.4 |
| N1 |
C |
C1 |
H8 |
236.4 |
84.3 |
| C3 |
N |
N1 |
C |
6.1 |
15.2 |
| N |
N1 |
C |
H6 |
180.0 |
180.0 |
| C2 |
C3 |
N |
N1 |
354.5 |
1.3 |
| C |
N1 |
N |
H6 |
180.0 |
180.0 |
| C |
N1 |
N |
C3 |
6.1 |
15.2 |
| C3 |
N |
N1 |
H6 |
186.1 |
195.2 |
| C3 |
C4 |
C5 |
H2 |
1.2 |
0.0 |
| C4 |
S |
C7 |
H1 |
179.8 |
180.3 |
| S |
C4 |
C5 |
H2 |
179.5 |
180.5 |
| C6 |
C7 |
S |
H1 |
180.0 |
179.7 |
| S |
C7 |
C6 |
H3 |
180.0 |
180.2 |
| C7 |
C6 |
C5 |
C4 |
0.4 |
359.6 |
| C6 |
C5 |
C4 |
H2 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H3 |
180.4 |
179.6 |
| S |
C7 |
C6 |
H1 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
C7 |
0.4 |
359.6 |
| C7 |
C6 |
C5 |
H2 |
180.3 |
179.5 |
| C5 |
C6 |
C7 |
H3 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H2 |
180.0 |
180.0 |
| C5 |
C6 |
C7 |
H1 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H3 |
180.0 |
180.0 |
| H1 |
C7 |
C6 |
C5 |
180.0 |
180.0 |
| H1 |
C7 |
C6 |
H3 |
360.0 |
359.9 |
| C4 |
C5 |
H2 |
C6 |
180.0 |
180.0 |
| H2 |
C5 |
C6 |
H3 |
0.4 |
359.5 |
| C7 |
C6 |
H3 |
C5 |
180.0 |
180.0 |
| H3 |
C6 |
C7 |
H1 |
360.0 |
359.9 |
| H3 |
C6 |
C5 |
H2 |
0.4 |
359.5 |
| C1 |
C2 |
H4 |
H7 |
117.4 |
240.2 |
| H4 |
C2 |
C3 |
N |
240.0 |
86.7 |
| H5 |
C1 |
C |
O |
298.3 |
24.5 |
| H5 |
C1 |
C |
N1 |
117.6 |
204.4 |
| C |
C1 |
H5 |
H8 |
118.1 |
239.9 |
| H5 |
C1 |
C2 |
H4 |
3.5 |
46.9 |
| H5 |
C1 |
C2 |
H7 |
121.8 |
287.1 |
| C |
N1 |
H6 |
N |
180.0 |
180.0 |
| C1 |
C2 |
H7 |
H4 |
242.6 |
119.9 |
| H7 |
C2 |
C3 |
N |
121.8 |
206.6 |
| H8 |
C1 |
C |
O |
57.1 |
264.4 |
| H8 |
C1 |
C |
N1 |
236.4 |
84.3 |
| C |
C1 |
H8 |
H5 |
241.8 |
120.1 |
| H8 |
C1 |
C2 |
H4 |
244.7 |
167.1 |
| H8 |
C1 |
C2 |
H7 |
2.9 |
47.2 |