PDB Chemical Component A5B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A5B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C11 |
N2 |
1.399 |
1.323 |
| C11 |
C10 |
1.385 |
1.386 |
| N2 |
C12 |
1.354 |
1.325 |
| C9 |
C10 |
1.396 |
1.502 |
| C9 |
N1 |
1.477 |
1.459 |
| C10 |
C13 |
1.388 |
1.385 |
| C12 |
N4 |
1.341 |
1.386 |
| C12 |
N3 |
1.344 |
1.323 |
| N4 |
C20 |
1.352 |
1.392 |
| C13 |
N3 |
1.340 |
1.338 |
| C13 |
C14 |
1.389 |
1.479 |
| N1 |
C8 |
1.329 |
1.284 |
| C1 |
O1 |
1.418 |
1.429 |
| C21 |
C20 |
1.388 |
1.393 |
| C21 |
C22 |
1.393 |
1.364 |
| C20 |
C25 |
1.394 |
1.390 |
| O1 |
C2 |
1.350 |
1.357 |
| C14 |
C19 |
1.395 |
1.400 |
| C14 |
C15 |
1.387 |
1.396 |
| C19 |
C18 |
1.394 |
1.377 |
| C8 |
C15 |
1.402 |
1.469 |
| C8 |
C7 |
1.396 |
1.478 |
| C15 |
C16 |
1.388 |
1.402 |
| C22 |
C23 |
1.386 |
1.399 |
| C25 |
C24 |
1.403 |
1.383 |
| C18 |
C17 |
1.395 |
1.385 |
| C16 |
C17 |
1.391 |
1.378 |
| C2 |
C7 |
1.382 |
1.401 |
| C2 |
C3 |
1.388 |
1.386 |
| C7 |
C6 |
1.404 |
1.397 |
| C17 |
CL1 |
1.751 |
1.736 |
| C23 |
C24 |
1.401 |
1.404 |
| C23 |
C27 |
1.408 |
1.471 |
| C24 |
O2 |
1.365 |
1.358 |
| C3 |
C4 |
1.395 |
1.382 |
| O4 |
C27 |
1.249 |
1.215 |
| C6 |
F1 |
1.431 |
1.351 |
| C6 |
C5 |
1.394 |
1.382 |
| C27 |
O3 |
1.250 |
1.348 |
| O2 |
C26 |
1.439 |
1.429 |
| C4 |
C5 |
1.393 |
1.385 |
| C26 |
H1 |
1.100 |
1.091 |
| C26 |
H2 |
1.100 |
1.090 |
| C26 |
H3 |
1.101 |
1.089 |
| C25 |
H4 |
1.080 |
1.080 |
| O3 |
H5 |
0.950 |
0.966 |
| C22 |
H6 |
1.080 |
1.081 |
| C21 |
H7 |
1.080 |
1.080 |
| N4 |
H8 |
1.000 |
0.970 |
| C11 |
H9 |
1.079 |
1.080 |
| C9 |
H10 |
1.100 |
1.091 |
| C9 |
H11 |
1.100 |
1.090 |
| C19 |
H12 |
1.080 |
1.080 |
| C18 |
H13 |
1.080 |
1.080 |
| C16 |
H14 |
1.080 |
1.081 |
| C5 |
H15 |
1.080 |
1.080 |
| C4 |
H16 |
1.081 |
1.080 |
| C3 |
H17 |
1.081 |
1.079 |
| C1 |
H18 |
1.100 |
1.090 |
| C1 |
H19 |
1.100 |
1.090 |
| C1 |
H20 |
1.100 |
1.091 |
Bond Angles for A5B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C10 |
C13 |
119.0 |
119.0 |
| C10 |
C11 |
H9 |
120.8 |
120.4 |
| C9 |
C10 |
C13 |
128.7 |
121.5 |
| C9 |
N1 |
C8 |
127.6 |
122.6 |
| N1 |
C9 |
H10 |
109.4 |
109.5 |
| N1 |
C9 |
H11 |
109.3 |
109.5 |
| C10 |
C13 |
C14 |
124.6 |
122.8 |
| C12 |
N4 |
H8 |
116.3 |
120.0 |
| C13 |
C14 |
C19 |
113.7 |
117.3 |
| C13 |
C14 |
C15 |
125.2 |
123.3 |
| N1 |
C8 |
C15 |
124.7 |
125.5 |
| N1 |
C8 |
C7 |
115.2 |
117.3 |
| C20 |
C21 |
H7 |
118.9 |
119.8 |
| C21 |
C22 |
H6 |
119.8 |
120.0 |
| C20 |
C25 |
H4 |
120.0 |
120.0 |
| C19 |
C14 |
C15 |
121.1 |
119.4 |
| C14 |
C19 |
C18 |
118.9 |
120.6 |
| C14 |
C19 |
H12 |
120.5 |
119.6 |
| C14 |
C15 |
C16 |
119.6 |
119.2 |
| C19 |
C18 |
C17 |
120.1 |
120.1 |
| C18 |
C19 |
H12 |
120.5 |
119.8 |
| C19 |
C18 |
H13 |
120.0 |
120.0 |
| C8 |
C7 |
C6 |
120.7 |
120.2 |
| C15 |
C16 |
H14 |
120.1 |
119.7 |
| C18 |
C17 |
CL1 |
121.1 |
120.0 |
| C17 |
C18 |
H13 |
119.9 |
119.9 |
| C2 |
C3 |
H17 |
120.4 |
120.0 |
| C7 |
C6 |
F1 |
121.6 |
120.1 |
| C7 |
C6 |
C5 |
120.2 |
119.9 |
| C23 |
C27 |
O3 |
120.9 |
120.0 |
| C3 |
C4 |
H16 |
119.8 |
119.8 |
| O4 |
C27 |
O3 |
118.3 |
120.0 |
| F1 |
C6 |
C5 |
118.2 |
120.0 |
| C6 |
C5 |
H15 |
120.2 |
119.9 |
| C27 |
O3 |
H5 |
109.5 |
117.0 |
| O2 |
C26 |
H1 |
109.5 |
109.4 |
| O2 |
C26 |
H2 |
109.5 |
109.5 |
| O2 |
C26 |
H3 |
109.5 |
109.5 |
| C4 |
C5 |
H15 |
120.1 |
119.8 |
| H1 |
C26 |
H2 |
109.5 |
109.4 |
| H1 |
C26 |
H3 |
109.5 |
109.5 |
| H2 |
C26 |
H3 |
109.5 |
109.5 |
| H10 |
C9 |
H11 |
109.5 |
109.4 |
| H18 |
C1 |
H19 |
109.4 |
109.5 |
| H18 |
C1 |
H20 |
109.5 |
109.5 |
| H19 |
C1 |
H20 |
109.5 |
109.4 |
Torsion Angles for A5B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C10 |
C11 |
C13 |
180.7 |
179.2 |
| C11 |
C10 |
C13 |
C14 |
181.4 |
181.3 |
| N2 |
C12 |
N4 |
H8 |
348.3 |
174.1 |
| C11 |
C10 |
C9 |
C13 |
179.2 |
180.8 |
| C9 |
C10 |
C11 |
H9 |
0.7 |
359.1 |
| C9 |
C10 |
C13 |
C14 |
0.6 |
2.2 |
| N1 |
C9 |
C10 |
C13 |
51.3 |
63.2 |
| C9 |
N1 |
C8 |
C15 |
6.4 |
359.8 |
| C9 |
N1 |
C8 |
C7 |
176.7 |
179.9 |
| H10 |
C9 |
N1 |
H11 |
119.9 |
119.9 |
| C13 |
C10 |
C11 |
H9 |
180.0 |
179.9 |
| C10 |
C13 |
C14 |
C19 |
147.8 |
141.2 |
| C10 |
C13 |
C14 |
C15 |
329.9 |
321.2 |
| N3 |
C12 |
N4 |
H8 |
165.5 |
354.4 |
| N4 |
C20 |
C21 |
H7 |
358.9 |
0.2 |
| N4 |
C20 |
C25 |
H4 |
0.2 |
359.8 |
| C19 |
C14 |
C13 |
C15 |
177.9 |
180.0 |
| C13 |
C14 |
C19 |
C18 |
182.1 |
180.2 |
| C13 |
C14 |
C19 |
H12 |
2.1 |
0.3 |
| C13 |
C14 |
C15 |
C16 |
179.3 |
179.5 |
| C8 |
N1 |
C9 |
H10 |
183.2 |
174.3 |
| C8 |
N1 |
C9 |
H11 |
63.3 |
54.4 |
| N1 |
C8 |
C7 |
C6 |
249.9 |
90.0 |
| C20 |
C21 |
C22 |
H6 |
182.3 |
180.2 |
| C21 |
C20 |
C25 |
H4 |
181.0 |
180.0 |
| O1 |
C2 |
C3 |
H17 |
0.2 |
0.1 |
| C13 |
C14 |
C19 |
C15 |
182.0 |
180.0 |
| C19 |
C14 |
C15 |
C16 |
1.6 |
359.6 |
| C14 |
C19 |
C18 |
C17 |
359.2 |
0.1 |
| C18 |
C19 |
C14 |
H12 |
180.0 |
179.9 |
| C14 |
C19 |
C18 |
H13 |
179.3 |
180.1 |
| C13 |
C14 |
C15 |
C19 |
177.7 |
180.0 |
| N1 |
C8 |
C15 |
C14 |
32.1 |
41.2 |
| C15 |
C14 |
C19 |
C18 |
0.1 |
0.2 |
| C15 |
C14 |
C19 |
H12 |
180.1 |
180.3 |
| C14 |
C15 |
C16 |
H14 |
177.4 |
180.3 |
| C18 |
C19 |
C14 |
C15 |
0.1 |
0.2 |
| C14 |
C19 |
C18 |
H12 |
180.0 |
180.1 |
| C19 |
C18 |
C17 |
CL1 |
180.0 |
179.9 |
| C17 |
C18 |
C19 |
H13 |
180.0 |
180.0 |
| N1 |
C8 |
C15 |
C7 |
169.9 |
180.1 |
| C8 |
C15 |
C16 |
H14 |
0.7 |
0.7 |
| N1 |
C8 |
C7 |
C15 |
189.2 |
179.9 |
| C8 |
C7 |
C6 |
F1 |
357.8 |
0.0 |
| C8 |
C7 |
C6 |
C5 |
179.5 |
180.0 |
| N1 |
C8 |
C15 |
C16 |
208.5 |
220.8 |
| C17 |
C18 |
C19 |
H12 |
179.2 |
180.0 |
| C19 |
C18 |
C17 |
H13 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
C17 |
357.4 |
0.3 |
| C16 |
C17 |
C18 |
H13 |
179.7 |
179.9 |
| C2 |
C3 |
C4 |
H16 |
180.0 |
179.7 |
| F1 |
C6 |
C7 |
C5 |
178.3 |
180.0 |
| C7 |
C6 |
C5 |
H15 |
178.9 |
180.0 |
| CL1 |
C17 |
C18 |
H13 |
359.9 |
359.9 |
| O4 |
C27 |
C23 |
O3 |
187.2 |
180.0 |
| C23 |
C27 |
O3 |
H5 |
187.1 |
180.0 |
| C24 |
O2 |
C26 |
H1 |
180.0 |
180.1 |
| C24 |
O2 |
C26 |
H2 |
300.0 |
300.0 |
| C24 |
O2 |
C26 |
H3 |
60.0 |
60.0 |
| C3 |
C4 |
C5 |
H15 |
180.1 |
180.0 |
| C23 |
C27 |
O4 |
O3 |
173.0 |
180.0 |
| O4 |
C27 |
O3 |
H5 |
360.0 |
360.0 |
| C7 |
C6 |
F1 |
C5 |
181.6 |
180.0 |
| F1 |
C6 |
C5 |
H15 |
0.5 |
0.1 |
| C7 |
C6 |
C5 |
F1 |
178.4 |
180.0 |
| C4 |
C5 |
C6 |
H15 |
180.0 |
180.0 |
| H1 |
C26 |
O2 |
H2 |
240.0 |
240.1 |
| H1 |
C26 |
O2 |
H3 |
120.0 |
120.0 |
| H2 |
C26 |
O2 |
H3 |
240.0 |
239.9 |
| C6 |
C5 |
C4 |
H15 |
180.0 |
180.0 |
| O2 |
C26 |
H1 |
H2 |
120.0 |
120.0 |
| O2 |
C26 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C26 |
H1 |
H3 |
120.0 |
120.0 |
| O2 |
C26 |
H2 |
H1 |
240.0 |
240.1 |
| O2 |
C26 |
H2 |
H3 |
120.0 |
120.1 |
| H1 |
C26 |
H2 |
H3 |
240.0 |
240.0 |
| O2 |
C26 |
H3 |
H1 |
120.0 |
120.0 |
| O2 |
C26 |
H3 |
H2 |
240.0 |
239.9 |
| H1 |
C26 |
H3 |
H2 |
120.0 |
120.0 |
| H7 |
C21 |
C22 |
H6 |
2.3 |
0.0 |
| H9 |
C11 |
C10 |
C13 |
180.0 |
179.9 |
| H10 |
C9 |
C10 |
C13 |
171.4 |
183.2 |
| H10 |
C9 |
N1 |
C8 |
183.2 |
174.3 |
| N1 |
C9 |
H10 |
H11 |
240.2 |
240.0 |
| H11 |
C9 |
C10 |
C13 |
291.2 |
303.1 |
| H11 |
C9 |
N1 |
C8 |
63.3 |
54.4 |
| N1 |
C9 |
H11 |
H10 |
119.8 |
120.0 |
| H12 |
C19 |
C14 |
C15 |
180.1 |
180.3 |
| C14 |
C19 |
H12 |
C18 |
180.0 |
179.9 |
| H12 |
C19 |
C18 |
C17 |
179.2 |
180.0 |
| H12 |
C19 |
C18 |
H13 |
359.2 |
360.0 |
| C19 |
C18 |
H13 |
C17 |
180.0 |
180.0 |
| H13 |
C18 |
C19 |
H12 |
359.2 |
360.0 |
| H13 |
C18 |
C17 |
CL1 |
359.9 |
359.9 |
| H16 |
C4 |
C5 |
H15 |
0.1 |
0.0 |
| H17 |
C3 |
C4 |
H16 |
360.0 |
360.0 |
| H19 |
C1 |
H18 |
H20 |
120.0 |
120.0 |
| H18 |
C1 |
H19 |
H20 |
240.0 |
240.0 |
| H18 |
C1 |
H20 |
H19 |
120.0 |
120.0 |