PDB Chemical Component A44
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A44
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
N1 |
1.331 |
1.320 |
| C2 |
N3 |
1.314 |
1.316 |
| N1 |
C6 |
1.344 |
1.329 |
| CB' |
CA' |
1.506 |
1.530 |
| CB' |
OC' |
1.451 |
1.429 |
| N3 |
C4 |
1.344 |
1.329 |
| C6 |
N6 |
1.335 |
1.384 |
| C6 |
C5 |
1.393 |
1.405 |
| CD' |
OC' |
1.452 |
1.428 |
| CA' |
O2' |
1.443 |
1.429 |
| C4 |
C5 |
1.378 |
1.406 |
| C4 |
N9 |
1.375 |
1.372 |
| C5 |
N7 |
1.382 |
1.355 |
| O2' |
C2' |
1.422 |
1.429 |
| C2' |
C1' |
1.521 |
1.554 |
| C2' |
C3' |
1.525 |
1.548 |
| N9 |
C1' |
1.459 |
1.465 |
| N9 |
C8 |
1.364 |
1.363 |
| N7 |
C8 |
1.311 |
1.301 |
| C1' |
O4' |
1.420 |
1.444 |
| O3' |
C3' |
1.421 |
1.429 |
| C3' |
C4' |
1.518 |
1.541 |
| O4' |
C4' |
1.455 |
1.438 |
| C4' |
C5' |
1.511 |
1.530 |
| O5' |
C5' |
1.425 |
1.429 |
| O5' |
P |
1.584 |
1.609 |
| OP1 |
P |
1.480 |
1.480 |
| P |
OP2 |
1.474 |
1.610 |
| P |
OP3 |
1.591 |
1.611 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'' |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.091 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
H2' |
1.100 |
1.090 |
| C1' |
H1' |
1.100 |
1.090 |
| C8 |
H8 |
1.080 |
1.080 |
| N6 |
H61 |
0.999 |
0.970 |
| N6 |
H62 |
1.000 |
0.971 |
| C2 |
H2 |
1.080 |
1.080 |
| CA' |
HCA2 |
1.100 |
1.090 |
| CA' |
HCA1 |
1.100 |
1.091 |
| CD' |
HCD1 |
1.100 |
1.089 |
| CD' |
HCD2 |
1.100 |
1.090 |
| CD' |
HCD3 |
1.100 |
1.091 |
| CB' |
HCB1 |
1.100 |
1.091 |
| CB' |
HCB2 |
1.100 |
1.090 |
| OP3 |
HOP3 |
0.950 |
0.967 |
Bond Angles for A44
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N3 |
C4 |
110.4 |
120.6 |
| N3 |
C2 |
H2 |
115.3 |
118.7 |
| CB' |
CA' |
HCA2 |
109.1 |
109.4 |
| CB' |
CA' |
HCA1 |
109.1 |
109.4 |
| C6 |
N6 |
H61 |
109.5 |
120.1 |
| C6 |
N6 |
H62 |
109.5 |
120.0 |
| OC' |
CD' |
HCD1 |
109.5 |
109.5 |
| OC' |
CD' |
HCD2 |
109.5 |
109.5 |
| OC' |
CD' |
HCD3 |
109.5 |
109.5 |
| O2' |
C2' |
C1' |
109.4 |
110.9 |
| O2' |
C2' |
H2' |
111.9 |
110.8 |
| C1' |
C2' |
H2' |
110.4 |
110.9 |
| C2' |
C1' |
H1' |
109.4 |
110.6 |
| C2' |
C3' |
H3' |
108.4 |
110.5 |
| N9 |
C1' |
H1' |
110.3 |
110.8 |
| N9 |
C8 |
H8 |
123.1 |
125.0 |
| N7 |
C8 |
H8 |
123.1 |
125.0 |
| O3' |
C3' |
H3' |
109.8 |
110.5 |
| C3' |
C4' |
H4' |
109.0 |
109.9 |
| O4' |
C4' |
H4' |
109.8 |
109.8 |
| C4' |
C5' |
H5' |
109.3 |
109.5 |
| C4' |
C5' |
H5'' |
109.3 |
109.4 |
| O5' |
C5' |
H5' |
109.3 |
109.5 |
| O5' |
C5' |
H5'' |
109.3 |
109.4 |
| O5' |
P |
OP3 |
105.1 |
109.5 |
| OP1 |
P |
OP3 |
105.6 |
109.4 |
| OP2 |
P |
OP3 |
109.3 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| H5' |
C5' |
H5'' |
109.5 |
109.5 |
| H61 |
N6 |
H62 |
109.5 |
119.9 |
| HCA2 |
CA' |
HCA1 |
109.5 |
109.5 |
| HCD1 |
CD' |
HCD2 |
109.5 |
109.5 |
| HCD1 |
CD' |
HCD3 |
109.4 |
109.5 |
| HCD2 |
CD' |
HCD3 |
109.5 |
109.5 |
| HCB1 |
CB' |
HCB2 |
109.5 |
109.4 |
Torsion Angles for A44
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C6 |
N6 |
H61 |
0.0 |
180.0 |
| N1 |
C6 |
N6 |
H62 |
120.0 |
0.1 |
| HCA2 |
CA' |
CB' |
HCA1 |
240.5 |
120.0 |
| OC' |
CB' |
CA' |
HCA2 |
188.3 |
305.0 |
| OC' |
CB' |
CA' |
HCA1 |
307.8 |
185.0 |
| CB' |
OC' |
CD' |
HCD1 |
180.0 |
300.0 |
| CB' |
OC' |
CD' |
HCD2 |
300.0 |
60.0 |
| CB' |
OC' |
CD' |
HCD3 |
60.0 |
180.0 |
| C4 |
N3 |
C2 |
H2 |
179.7 |
179.7 |
| H61 |
N6 |
C6 |
H62 |
240.0 |
180.0 |
| HCD1 |
CD' |
OC' |
HCD2 |
240.0 |
240.0 |
| HCD1 |
CD' |
OC' |
HCD3 |
120.0 |
120.0 |
| HCD2 |
CD' |
OC' |
HCD3 |
240.0 |
240.0 |
| CA' |
O2' |
C2' |
H2' |
309.0 |
26.3 |
| C4 |
N9 |
C1' |
H1' |
310.5 |
321.8 |
| C4 |
N9 |
C8 |
H8 |
181.3 |
180.3 |
| C5 |
N7 |
C8 |
H8 |
179.4 |
180.0 |
| C1' |
C2' |
O2' |
H2' |
122.8 |
123.7 |
| O2' |
C2' |
C1' |
H1' |
334.3 |
36.8 |
| O2' |
C2' |
C3' |
H3' |
168.1 |
102.3 |
| O2' |
C2' |
C1' |
H2' |
236.4 |
236.4 |
| C1' |
C2' |
C3' |
H3' |
284.9 |
220.4 |
| N9 |
C1' |
C2' |
H1' |
238.4 |
236.9 |
| O3' |
C3' |
C2' |
H3' |
237.9 |
237.3 |
| C2' |
C3' |
C4' |
H4' |
76.4 |
117.6 |
| N9 |
C1' |
C2' |
H2' |
336.4 |
37.3 |
| C2' |
C1' |
N9 |
H1' |
121.0 |
123.0 |
| C8 |
N9 |
C1' |
H1' |
130.0 |
142.0 |
| N7 |
C8 |
N9 |
H8 |
180.0 |
180.0 |
| N9 |
C8 |
N7 |
H8 |
180.0 |
180.0 |
| C1' |
O4' |
C4' |
H4' |
269.4 |
266.9 |
| C2' |
C3' |
O3' |
H3' |
121.3 |
122.7 |
| O3' |
C3' |
C4' |
H4' |
313.7 |
358.7 |
| O4' |
C4' |
C3' |
H4' |
243.7 |
240.5 |
| C3' |
C4' |
C5' |
H5' |
173.8 |
64.6 |
| C3' |
C4' |
C5' |
H5'' |
293.6 |
304.6 |
| C3' |
C4' |
O4' |
H4' |
115.7 |
119.5 |
| O4' |
C4' |
C5' |
H5' |
58.0 |
306.7 |
| O4' |
C4' |
C5' |
H5'' |
177.8 |
186.7 |
| O5' |
C5' |
C4' |
H5' |
239.9 |
120.1 |
| O5' |
C5' |
C4' |
H5'' |
120.1 |
240.1 |
| H5' |
C5' |
C4' |
H5'' |
240.2 |
120.0 |
| C4' |
C5' |
O5' |
H5' |
120.1 |
239.9 |
| C4' |
C5' |
O5' |
H5'' |
239.9 |
119.9 |
| C5' |
O5' |
P |
OP3 |
294.7 |
175.0 |
| H5' |
C5' |
O5' |
H5'' |
119.8 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
247.3 |
240.0 |
| OP2 |
P |
O5' |
OP3 |
115.9 |
120.0 |
| O5' |
P |
OP2 |
HOP2 |
124.6 |
300.0 |
| O5' |
P |
OP3 |
HOP3 |
244.9 |
180.0 |
| O5' |
P |
OP1 |
OP3 |
112.4 |
120.0 |
| OP2 |
P |
OP1 |
OP3 |
235.8 |
240.0 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
| OP1 |
P |
OP3 |
HOP3 |
0.0 |
300.0 |
| O5' |
P |
OP2 |
OP3 |
246.9 |
240.0 |
| OP1 |
P |
OP2 |
OP3 |
122.4 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
130.9 |
59.9 |
| OP3 |
P |
OP2 |
HOP2 |
237.6 |
60.1 |
| HOP2 |
OP2 |
P |
OP3 |
237.6 |
60.1 |
| C4' |
C5' |
H5' |
H5'' |
119.7 |
240.1 |
| O5' |
C5' |
H5' |
H5'' |
240.3 |
120.0 |
| C4' |
C5' |
H5'' |
H5' |
240.3 |
120.0 |
| O5' |
C5' |
H5'' |
H5' |
119.7 |
240.0 |
| H4' |
C4' |
C5' |
H5' |
297.4 |
185.7 |
| H4' |
C4' |
C5' |
H5'' |
57.2 |
65.7 |
| H3' |
C3' |
C4' |
H4' |
190.7 |
236.2 |
| HO3' |
O3' |
C3' |
H3' |
58.6 |
61.0 |
| O2' |
C2' |
H2' |
C1' |
122.2 |
123.6 |
| H2' |
C2' |
C1' |
H1' |
98.0 |
160.4 |
| H2' |
C2' |
C3' |
H3' |
41.7 |
338.7 |
| H1' |
C1' |
C2' |
H2' |
98.0 |
160.4 |
| C6 |
N6 |
H61 |
H62 |
120.0 |
180.0 |
| C6 |
N6 |
H62 |
H61 |
240.0 |
180.0 |
| H2 |
C2 |
N3 |
C4 |
179.7 |
179.7 |
| CB' |
CA' |
HCA2 |
HCA1 |
119.3 |
240.0 |
| CB' |
CA' |
HCA1 |
HCA2 |
240.7 |
120.0 |
| OC' |
CD' |
HCD1 |
HCD2 |
120.0 |
120.0 |
| OC' |
CD' |
HCD1 |
HCD3 |
240.0 |
240.0 |
| HCD2 |
CD' |
HCD1 |
HCD3 |
120.0 |
120.0 |
| OC' |
CD' |
HCD2 |
HCD1 |
239.9 |
240.0 |
| OC' |
CD' |
HCD2 |
HCD3 |
120.0 |
120.0 |
| HCD1 |
CD' |
HCD2 |
HCD3 |
240.0 |
240.0 |
| OC' |
CD' |
HCD3 |
HCD1 |
120.0 |
120.0 |
| OC' |
CD' |
HCD3 |
HCD2 |
240.0 |
240.0 |
| HCD1 |
CD' |
HCD3 |
HCD2 |
120.0 |
120.0 |
| HCB1 |
CB' |
CA' |
HCA2 |
308.7 |
65.0 |
| HCB1 |
CB' |
CA' |
HCA1 |
68.2 |
305.0 |
| HCB2 |
CB' |
CA' |
HCA2 |
67.9 |
185.0 |
| HCB2 |
CB' |
CA' |
HCA1 |
187.4 |
65.0 |