Atom Nomenclature for A3W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for A3W

Atom Name (V3) Atom Name (V2)
CAD C1
CAA C2
OAB O1
CAC C3
CAF C4
NAE N1
CAM C5
NAR N2
NAL N3
CAK C6
NAJ N4
CAI C7
CAH C8
OAG O2
CAN C9
CAO C10
NAP N5
CAQ C11
CAU C12
CAT C13
NAY N6
CAZ C14
NBC N7
CBA C15
CAV C16
CAW C17
FBB F1
FAS F2
FAX F3
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20