PDB Chemical Component A3T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A3T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C O 1.359 1.213
C N8 1.331 1.347
C CA 1.530 1.507
N CA 1.470 1.469
N1 C2 1.322 1.321
N1 C6 1.341 1.329
C2 N3 1.321 1.316
N3 C4 1.341 1.329
C4 C5 1.389 1.405
C4 N9 1.330 1.371
C5 C6 1.389 1.406
C5 N7 1.329 1.354
C6 N6 1.331 1.383
N7 C8 1.331 1.302
C8 N9 1.331 1.364
N8 C3' 1.470 1.466
N9 C1' 1.481 1.465
CA CB 1.530 1.530
CB OG 1.431 1.429
CB CG2 1.531 1.531
C1' C2' 1.530 1.550
C1' O4' 1.438 1.444
C2' O2' 1.431 1.430
C2' C3' 1.526 1.548
C3' C4' 1.529 1.541
C4' O4' 1.439 1.437
C4' C5' 1.530 1.530
C5' O5' 1.430 1.429
N HN 1.000 1.008
N HNA 1.001 1.009
C2 H2 1.080 1.080
N6 HN6 1.000 0.970
N6 HN6A 1.000 0.971
C8 H8 1.080 1.079
N8 HN8 1.000 0.970
CA HA 1.100 1.091
CB HB 1.100 1.090
OG HOG 0.950 0.967
C1' H1' 1.100 1.090
C2' H2' 1.100 1.090
O2' HO2' 0.950 0.967
C3' H3' 1.100 1.090
C4' H4' 1.100 1.089
C5' H5' 1.100 1.090
C5' H5'A 1.100 1.089
O5' HO5' 0.950 0.967
CG2 HG2 1.100 1.091
CG2 HG2A 1.100 1.090
CG2 HG2B 1.100 1.090

Bond Angles for A3T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O C N8 124.5 120.0
O C CA 118.2 120.0
N8 C CA 117.3 120.0
C N8 C3' 123.8 120.0
C N8 HN8 118.1 120.0
C CA N 108.8 109.5
C CA CB 110.8 109.5
C CA HA 109.1 109.5
N CA CB 109.4 109.5
CA N HN 109.5 111.0
CA N HNA 109.5 111.0
N CA HA 110.4 109.5
C2 N1 C6 120.9 121.2
N1 C2 N3 121.9 122.5
N1 C2 H2 119.1 118.7
N1 C6 C5 118.9 118.4
N1 C6 N6 120.7 120.8
C2 N3 C4 120.6 120.6
N3 C2 H2 119.1 118.8
N3 C4 C5 119.1 119.1
N3 C4 N9 133.9 134.9
C5 C4 N9 107.0 106.0
C4 C5 C6 118.6 118.2
C4 C5 N7 107.5 107.1
C4 N9 C8 108.0 107.5
C4 N9 C1' 127.0 126.3
C6 C5 N7 133.9 134.7
C5 C6 N6 120.3 120.8
C5 N7 C8 107.7 109.5
C6 N6 HN6 109.5 120.0
C6 N6 HN6A 109.5 120.0
N7 C8 N9 109.8 109.9
N7 C8 H8 125.1 125.1
C8 N9 C1' 124.8 126.2
N9 C8 H8 125.1 125.0
N8 C3' C2' 111.2 110.5
N8 C3' C4' 109.4 110.5
C3' N8 HN8 118.1 120.0
N8 C3' H3' 106.2 110.4
N9 C1' C2' 113.8 110.6
N9 C1' O4' 108.5 110.7
N9 C1' H1' 106.0 110.5
CA CB OG 108.5 109.5
CA CB CG2 111.7 109.5
CB CA HA 108.4 109.4
CA CB HB 109.3 109.5
OG CB CG2 111.3 109.5
OG CB HB 109.7 109.5
CB OG HOG 109.5 114.1
CG2 CB HB 106.3 109.4
CB CG2 HG2 109.5 109.4
CB CG2 HG2A 109.5 109.5
CB CG2 HG2B 109.4 109.5
C2' C1' O4' 105.4 103.5
C1' C2' O2' 109.3 110.9
C1' C2' C3' 100.6 102.1
C2' C1' H1' 109.1 110.6
C1' C2' H2' 115.2 110.9
C1' O4' C4' 109.0 107.0
O4' C1' H1' 114.3 110.8
O2' C2' C3' 109.6 110.9
O2' C2' H2' 107.1 110.8
C2' O2' HO2' 109.5 114.0
C2' C3' C4' 102.0 104.2
C3' C2' H2' 114.9 111.0
C2' C3' H3' 113.1 110.5
C3' C4' O4' 106.8 107.3
C3' C4' C5' 109.2 109.9
C4' C3' H3' 114.9 110.6
C3' C4' H4' 111.9 109.9
O4' C4' C5' 110.9 109.9
O4' C4' H4' 110.2 109.9
C4' C5' O5' 109.9 109.5
C5' C4' H4' 107.9 110.0
C4' C5' H5' 109.3 109.5
C4' C5' H5'A 109.4 109.5
O5' C5' H5' 109.4 109.5
O5' C5' H5'A 109.3 109.5
C5' O5' HO5' 109.5 114.0
HN N HNA 109.5 111.0
HN6 N6 HN6A 109.5 119.9
H5' C5' H5'A 109.6 109.5
HG2 CG2 HG2A 109.4 109.5
HG2 CG2 HG2B 109.5 109.5
HG2A CG2 HG2B 109.5 109.5

Torsion Angles for A3T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N8 C O CA 180.4 180.2
O C N8 C3' 0.5 0.1
O C N8 HN8 180.5 180.1
O C CA N 319.9 339.9
O C CA CB 80.2 100.0
O C CA HA 199.4 219.9
O C N8 CA 179.6 179.8
N8 C CA N 139.5 159.7
N8 C CA CB 259.8 279.8
N8 C CA HA 19.1 39.7
C N8 C3' C2' 93.3 155.0
C N8 C3' C4' 205.2 269.7
C3' N8 C HN8 180.0 180.0
C N8 C3' H3' 329.7 32.4
O C CA N8 180.4 180.2
CA C N8 C3' 180.9 180.3
CA C N8 HN8 0.9 0.3
N CA C CB 239.7 240.0
C CA N HN 180.0 296.1
C CA N HNA 300.0 60.0
N CA C HA 120.4 120.0
C CA CB OG 169.6 304.9
C CA CB CG2 46.5 184.9
CB CA C HA 240.8 240.1
C CA CB HB 289.2 65.0
C CA N CB 121.2 120.0
C CA N HA 240.4 240.0
N CA CB OG 289.6 65.0
N CA CB CG2 166.5 305.0
CB CA N HA 119.2 120.0
N CA CB HB 49.1 185.0
HN N CA HNA 240.0 236.1
C2 N1 C6 C5 0.1 360.0
C2 N1 C6 N6 181.2 180.0
N1 C2 N3 C4 359.8 0.1
N3 C2 N1 H2 180.0 179.9
C6 N1 C2 N3 0.2 360.0
C6 N1 C2 H2 180.2 180.0
C4 C5 C6 N1 359.6 360.0
N1 C6 C5 N7 179.6 180.1
C5 C6 N1 N6 178.9 180.0
N1 C6 N6 HN6 360.0 360.0
N1 C6 N6 HN6A 120.0 179.9
N3 C2 N1 C6 0.2 360.0
N1 C2 N3 H2 180.0 180.1
C2 N3 C4 C5 359.9 359.9
C2 N3 C4 N9 179.8 179.9
C4 N3 C2 H2 179.8 180.1
C5 C4 N3 N9 180.1 179.9
N3 C4 C5 C6 0.4 0.1
N3 C4 C5 N7 180.4 180.0
N3 C4 N9 C8 179.4 180.0
N3 C4 N9 C1' 354.3 359.9
N1 C6 C5 C4 359.6 360.0
N3 C4 C5 N9 179.9 180.1
C5 C4 N9 C8 359.3 0.0
C5 C4 N9 C1' 174.2 180.0
C6 C5 C4 N7 180.0 180.1
C4 C5 C6 N6 178.5 180.0
C4 C5 N7 C8 359.9 0.0
N3 C4 N9 C5 180.1 179.9
N9 C4 C5 C6 180.5 180.0
N9 C4 C5 N7 0.5 360.0
N7 C8 N9 C4 0.6 360.0
C8 N9 C4 C1' 185.1 180.0
C4 N9 C8 H8 180.6 180.0
C4 N9 C1' C2' 44.3 85.0
C4 N9 C1' O4' 161.2 199.1
C4 N9 C1' H1' 284.4 322.2
N1 C6 C5 N6 181.1 180.0
C6 C5 C4 N9 180.5 180.0
C4 C5 C6 N7 180.0 179.9
C6 C5 N7 C8 179.9 179.9
C5 C6 N6 HN6 181.1 180.0
C5 C6 N6 HN6A 301.1 359.9
N7 C5 C4 N9 0.5 360.0
C4 C5 N7 C6 180.0 180.1
N7 C5 C6 N6 358.5 0.1
C5 N7 C8 N9 359.7 0.0
C5 N7 C8 H8 179.7 180.0
N1 C6 N6 C5 178.9 180.0
N6 C6 C5 N7 358.5 0.1
HN6 N6 C6 HN6A 240.0 180.0
C4 N9 C8 N7 0.6 360.0
N7 C8 N9 C1' 185.6 180.0
N9 C8 N7 H8 180.0 180.0
C4 N9 C8 C1' 175.0 180.0
N7 C8 N9 H8 180.0 180.0
C8 N9 C1' C2' 218.3 265.0
C8 N9 C1' O4' 335.3 19.1
C8 N9 C1' H1' 98.5 142.1
C3' N8 C CA 180.9 180.3
C N8 C3' HN8 180.0 180.0
C1' C2' C3' N8 154.8 97.8
O2' C2' C3' N8 39.8 339.6
C2' C3' N8 C4' 248.1 245.3
N8 C3' C2' H2' 279.2 216.0
C2' C3' N8 H3' 123.5 122.6
N8 C3' C4' O4' 215.2 239.3
N8 C3' C4' C5' 95.2 119.9
C4' C3' N8 H3' 235.4 237.4
N8 C3' C4' H4' 335.8 358.7
C4 N9 C1' C8 185.9 180.0
C1' N9 C8 H8 5.6 0.0
C2' C1' N9 O4' 243.1 245.9
N9 C1' C2' O2' 196.4 273.8
N9 C1' C2' C3' 81.2 155.6
C2' C1' N9 H1' 119.9 122.8
N9 C1' C2' H2' 317.0 37.3
N9 C1' O4' C4' 259.4 201.4
O4' C1' N9 H1' 236.8 236.9
C CA CB N 240.0 240.0
C CA CB HA 119.6 120.0
CB CA N HN 58.8 176.1
CB CA N HNA 178.8 300.0
N CA CB HA 239.6 240.0
OG CB CA CG2 123.1 120.0
OG CB CA HB 240.4 239.9
CA CB OG HOG 180.0 300.0
CG2 CB CA HB 117.3 119.9
CA CB CG2 HG2 180.0 60.0
CA CB CG2 HG2A 300.0 180.0
CA CB CG2 HG2B 60.0 300.0
CA CB OG CG2 236.7 240.0
OG CB CA HA 50.0 185.0
CA CB OG HB 119.3 120.1
CG2 CB OG HB 242.6 240.1
OG CB CG2 HG2 58.5 300.0
OG CB CG2 HG2A 178.5 60.0
OG CB CG2 HG2B 298.5 180.0
CA CB CG2 OG 121.5 120.0
CG2 CB CA HA 286.9 65.0
CA CB CG2 HB 240.9 240.0
OG CB CG2 HB 119.4 120.0
CG2 CB OG HOG 303.3 60.0
HG2 CG2 CB HG2A 240.0 240.0
HG2 CG2 CB HG2B 120.0 120.0
HG2A CG2 CB HG2B 240.0 240.0
N8 C3' C2' C1' 154.8 97.8
N9 C1' C2' O4' 118.7 118.5
N9 C1' C2' H1' 241.9 237.2
C2' C1' O4' C4' 21.6 319.9
O4' C1' C2' H1' 123.2 118.7
O2' C2' C1' C3' 115.2 118.2
O2' C2' C1' H2' 239.4 236.5
C1' C2' O2' HO2' 180.0 61.5
C1' C2' C3' C4' 38.2 339.1
C3' C2' C1' H2' 124.2 118.3
C1' C2' C3' H3' 274.3 220.3
N9 C1' O4' C2' 237.8 241.5
N9 C1' O4' H1' 118.0 122.9
O4' C1' C2' O2' 77.7 155.2
O4' C1' C2' C3' 322.5 37.0
C2' C1' O4' H1' 240.2 241.4
O4' C1' C2' H2' 198.3 278.8
C3' C4' O4' C1' 3.5 26.5
C1' O4' C4' C5' 122.3 145.9
C1' O4' C4' H4' 241.7 267.1
N8 C3' C2' O2' 39.8 339.6
O2' C2' C1' O4' 77.7 155.2
C1' C2' O2' C3' 250.7 247.3
O2' C2' C1' H1' 314.5 36.6
C1' C2' O2' H2' 125.4 123.6
O2' C2' C3' C4' 283.2 220.9
C3' C2' O2' H2' 234.7 236.3
O2' C2' C3' H3' 159.3 102.1
N8 C3' C2' C4' 116.6 118.7
C2' C3' N8 HN8 273.2 335.0
N8 C3' C2' H3' 240.5 237.4
C3' C2' C1' O4' 322.5 37.0
C1' C2' C3' O2' 115.0 118.2
C3' C2' C1' H1' 199.3 278.4
C1' C2' C3' H2' 235.6 241.8
O2' C2' C3' H2' 120.6 123.6
C3' C2' O2' HO2' 289.3 174.2
C2' C3' C4' O4' 333.0 358.0
C2' C3' C4' C5' 213.1 238.6
C4' C3' C2' H3' 124.0 118.8
C2' C3' C4' H4' 93.7 117.4
N8 C3' C4' C2' 242.1 241.3
C4' C3' N8 HN8 25.2 89.8
N8 C3' C4' H3' 119.3 122.6
C1' O4' C4' C3' 3.5 26.5
C4' C3' C2' H2' 162.7 97.3
C2' C3' C4' H3' 237.2 241.3
O4' C4' C3' C5' 120.0 119.4
O4' C4' C3' H4' 239.3 240.5
C3' C4' C5' O5' 53.8 185.0
C5' C4' C3' H4' 119.4 121.1
C3' C4' C5' H5' 173.8 305.0
C3' C4' C5' H5'A 293.8 65.0
C4' O4' C1' H1' 141.4 78.5
C3' C4' O4' C5' 241.2 240.6
O4' C4' C3' H3' 95.8 116.7
C3' C4' O4' H4' 121.8 119.4
O4' C4' C5' O5' 296.4 67.2
C5' C4' O4' H4' 240.6 238.9
O4' C4' C5' H5' 56.5 187.2
O4' C4' C5' H5'A 176.4 307.1
C3' C4' C5' O4' 117.4 117.8
C5' C4' C3' H3' 335.9 357.3
C3' C4' C5' H4' 238.1 238.9
O4' C4' C5' H4' 120.8 121.1
O5' C5' C4' H5' 240.0 240.0
O5' C5' C4' H5'A 120.0 120.0
C4' C5' O5' HO5' 180.0 180.0
H5' C5' C4' H5'A 240.1 240.0
O5' C5' C4' H4' 175.7 306.1
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'A 240.0 240.0
H5' C5' O5' H5'A 120.0 120.0
HN N CA CB 58.8 176.1
CA N HN HNA 120.0 123.9
HN N CA HA 299.6 56.1
HNA N CA CB 178.8 300.0
CA N HNA HN 240.0 236.1
HNA N CA HA 59.6 180.0
H2 C2 N1 C6 180.2 180.0
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C4 179.8 180.1
C6 N6 HN6 HN6A 120.0 180.0
C6 N6 HN6A HN6 240.0 180.0
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C1' 5.6 0.0
HN8 N8 C CA 0.9 0.3
C N8 HN8 C3' 180.0 180.0
HN8 N8 C3' C2' 273.2 335.0
HN8 N8 C3' C4' 25.2 89.8
HN8 N8 C3' H3' 149.7 212.4
C CA HA N 119.5 120.0
C CA HA CB 239.3 240.0
N CA HA CB 119.8 120.0
HA CA N HN 299.6 56.1
HA CA N HNA 59.6 180.0
HA CA CB OG 50.0 185.0
HA CA CB CG2 286.9 65.0
HA CA CB HB 169.5 305.0
CA CB HB OG 241.2 239.9
CA CB HB CG2 120.7 120.0
HB CB CA HA 169.5 305.0
OG CB HB CG2 239.5 240.0
HB CB OG HOG 60.7 179.9
HB CB CG2 HG2 299.1 180.0
HB CB CG2 HG2A 59.1 300.0
HB CB CG2 HG2B 179.1 60.1
HOG OG CB CG2 303.3 60.0
HOG OG CB HB 60.7 179.9
N9 C1' H1' C2' 122.9 122.8
N9 C1' H1' O4' 240.6 237.0
C2' C1' H1' O4' 117.7 114.2
H1' C1' C2' O2' 314.5 36.6
H1' C1' C2' C3' 199.3 278.4
H1' C1' C2' H2' 75.1 160.1
H1' C1' O4' C4' 141.4 78.5
H2' C2' C1' O4' 198.3 278.8
C1' C2' H2' O2' 238.2 236.4
C1' C2' H2' C3' 116.3 112.7
H2' C2' C1' H1' 75.1 160.1
O2' C2' H2' C3' 238.0 236.4
H2' C2' O2' HO2' 54.6 297.9
H2' C2' C3' C4' 162.7 97.3
H2' C2' C3' H3' 38.7 338.6
HO2' O2' C2' C3' 289.3 174.2
HO2' O2' C2' H2' 54.6 297.9
N8 C3' H3' C2' 122.3 122.6
N8 C3' H3' C4' 238.9 237.4
H3' C3' N8 HN8 149.7 212.4
C2' C3' H3' C4' 116.6 114.8
H3' C3' C2' H2' 38.7 338.6
H3' C3' C4' O4' 95.8 116.7
H3' C3' C4' C5' 335.9 357.3
H3' C3' C4' H4' 216.5 236.2
C3' C4' H4' O4' 241.3 242.1
C3' C4' H4' C5' 120.1 121.1
H4' C4' C3' H3' 216.5 236.2
O4' C4' H4' C5' 238.8 238.9
H4' C4' C5' O5' 175.7 306.1
H4' C4' C5' H5' 295.7 66.1
H4' C4' C5' H5'A 55.6 186.1
C4' C5' H5' O5' 239.7 240.0
H5' C5' C4' H4' 295.7 66.1
C4' C5' H5' H5'A 119.8 120.0
O5' C5' H5' H5'A 240.2 240.0
H5' C5' O5' HO5' 60.0 60.0
C4' C5' H5'A O5' 120.4 120.0
H5'A C5' C4' H4' 55.6 186.1
C4' C5' H5'A H5' 240.2 240.0
O5' C5' H5'A H5' 119.8 120.0
H5'A C5' O5' HO5' 300.0 300.0
HO5' O5' C5' H5' 60.0 60.0
HO5' O5' C5' H5'A 300.0 300.0
HG2 CG2 CB HB 299.1 180.0
CB CG2 HG2 HG2A 120.0 120.0
CB CG2 HG2 HG2B 240.0 240.0
HG2A CG2 HG2 HG2B 120.0 120.0
HG2A CG2 CB HB 59.1 300.0
CB CG2 HG2A HG2 240.0 240.1
CB CG2 HG2A HG2B 120.0 120.1
HG2 CG2 HG2A HG2B 240.0 240.0
HG2B CG2 CB HB 179.1 60.1
CB CG2 HG2B HG2 120.0 119.9
CB CG2 HG2B HG2A 240.0 240.0
HG2 CG2 HG2B HG2A 120.0 120.0