PDB Chemical Component A3S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A3S

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O5' C5' 1.425 1.428
O5' H5' 0.950 0.967
C5' C4' 1.512 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.115 1.090
C4' O4' 1.455 1.446
C4' C3' 1.526 1.544
C4' H4' 1.115 1.090
O4' C1' 1.414 1.444
C1' N9 1.462 1.466
C1' C2' 1.527 1.544
C1' H1' 1.115 1.090
N9 C4 1.374 1.372
N9 C8 1.374 1.364
C4 N3 1.343 1.329
C4 C5 1.384 1.406
N3 C2 1.332 1.316
C2 N1 1.341 1.320
C2 H2 1.103 1.081
N1 C6 1.352 1.329
C6 N6 1.335 1.384
C6 C5 1.407 1.405
N6 HN61 1.020 0.970
N6 HN62 1.020 0.971
C5 N7 1.389 1.354
N7 C8 1.311 1.302
C8 H8 1.103 1.079
C2' O2' 1.415 1.430
C2' C3' 1.524 1.545
C2' H2' 1.114 1.090
O2' H1 0.951 0.967
C3' N8 1.424 1.465
C3' H3' 1.115 1.091
N8 C 1.422 1.347
N8 HN8 1.020 0.970
N CA 1.459 1.469
N HN1 1.020 1.009
N HN2 1.020 1.009
CA CB 1.531 1.530
CA C 1.526 1.507
CA HA 1.115 1.090
CB OG 1.417 1.429
CB HB1 1.115 1.090
CB HB2 1.115 1.090
OG HOG 0.949 0.967
C O 1.232 1.213

Bond Angles for A3S

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C5' O5' H5' 110.2 106.8
O5' C5' C4' 110.2 109.5
O5' C5' H5'1 111.9 109.5
O5' C5' H5'2 111.9 109.5
C4' C5' H5'1 111.9 109.4
C4' C5' H5'2 111.9 109.4
C5' C4' O4' 108.9 110.4
C5' C4' C3' 115.2 110.7
C5' C4' H4' 104.9 110.3
H5'1 C5' H5'2 98.5 109.5
O4' C4' C3' 106.1 104.7
O4' C4' H4' 114.2 110.3
C4' O4' C1' 109.7 105.4
C3' C4' H4' 107.8 110.3
C4' C3' C2' 102.8 104.2
C4' C3' N8 113.4 110.5
C4' C3' H3' 110.6 110.5
O4' C1' N9 108.2 110.5
O4' C1' C2' 106.1 104.8
O4' C1' H1' 113.7 110.3
N9 C1' C2' 112.9 110.4
N9 C1' H1' 106.9 110.3
C1' N9 C4 126.5 126.3
C1' N9 C8 127.7 126.2
C2' C1' H1' 109.2 110.4
C1' C2' O2' 110.4 110.6
C1' C2' C3' 101.3 104.0
C1' C2' H2' 115.4 110.6
C4 N9 C8 105.8 107.5
N9 C4 N3 127.4 134.9
N9 C4 C5 105.8 106.0
N9 C8 N7 113.8 109.9
N9 C8 H8 125.2 125.1
N3 C4 C5 126.8 119.1
C4 N3 C2 110.7 120.6
C4 C5 C6 117.1 118.2
C4 C5 N7 110.7 107.1
N3 C2 N1 129.3 122.5
N3 C2 H2 115.0 118.7
N1 C2 H2 115.7 118.8
C2 N1 C6 118.5 121.2
N1 C6 N6 118.6 120.8
N1 C6 C5 117.7 118.4
N6 C6 C5 123.7 120.8
C6 N6 HN61 108.9 120.0
C6 N6 HN62 118.6 120.0
C6 C5 N7 132.3 134.7
HN61 N6 HN62 108.9 120.0
C5 N7 C8 103.9 109.5
N7 C8 H8 121.0 125.0
O2' C2' C3' 113.1 110.5
O2' C2' H2' 104.2 110.4
C2' O2' H1 110.4 106.8
C3' C2' H2' 112.8 110.5
C2' C3' N8 107.2 110.6
C2' C3' H3' 116.5 110.5
N8 C3' H3' 106.5 110.4
C3' N8 C 117.1 120.0
C3' N8 HN8 121.4 119.9
C N8 HN8 121.4 120.0
N8 C CA 115.8 120.0
N8 C O 123.2 120.0
CA N HN1 112.1 106.7
CA N HN2 109.8 106.7
N CA CB 109.8 109.5
N CA C 111.0 109.5
N CA HA 108.5 109.4
HN1 N HN2 112.1 106.6
CB CA C 110.3 109.5
CB CA HA 109.3 109.4
CA CB OG 111.0 109.5
CA CB HB1 111.6 109.5
CA CB HB2 111.6 109.5
C CA HA 108.0 109.5
CA C O 121.0 120.0
OG CB HB1 111.6 109.4
OG CB HB2 111.6 109.5
CB OG HOG 111.1 106.9
HB1 CB HB2 98.8 109.4

Torsion Angles for A3S

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4' C5' O5' H5'1 125.2 120.0
C4' C5' O5' H5'2 234.7 240.0
O5' C5' C4' O4' 298.9 66.4
O5' C5' C4' C3' 58.0 181.9
O5' C5' C4' H4' 176.3 304.2
H5'1 C5' O5' H5'2 109.5 120.0
H5' O5' C5' C4' 180.0 180.0
H5' O5' C5' H5'1 54.7 60.0
H5' O5' C5' H5'2 305.3 300.0
C4' C5' O5' H5' 180.0 180.0
O5' C5' C4' H5'1 234.7 240.0
O5' C5' C4' H5'2 125.3 120.0
H5'1 C5' C4' H5'2 250.5 240.0
O4' C4' C5' C3' 241.0 244.5
O4' C4' C5' H4' 122.6 122.2
C5' C4' O4' C1' 121.8 159.5
C3' C4' C5' H4' 241.7 237.6
C5' C4' C3' C2' 264.1 217.3
C5' C4' C3' N8 148.7 98.5
C5' C4' C3' H3' 29.1 336.0
H5'1 C5' O5' H5' 54.7 60.0
O5' C5' H5'1 C4' 124.3 120.1
O5' C5' H5'1 H5'2 242.1 240.0
C4' C5' H5'1 H5'2 117.9 119.9
H5'1 C5' C4' O4' 64.2 186.5
H5'1 C5' C4' C3' 183.2 301.9
H5'1 C5' C4' H4' 301.6 64.3
H5'2 C5' O5' H5' 305.3 300.0
O5' C5' H5'2 C4' 235.7 240.0
O5' C5' H5'2 H5'1 117.9 120.0
C4' C5' H5'2 H5'1 242.2 240.1
H5'2 C5' C4' O4' 173.7 306.4
H5'2 C5' C4' C3' 292.7 61.9
H5'2 C5' C4' H4' 51.0 184.2
O4' C4' C5' H5'1 64.2 186.5
O4' C4' C5' H5'2 173.7 306.4
C5' C4' O4' C3' 124.6 119.2
C5' C4' O4' H4' 243.2 237.8
C3' C4' O4' H4' 118.6 118.7
O4' C4' C3' C2' 24.7 336.3
O4' C4' C3' N8 269.3 217.5
O4' C4' C3' H3' 149.7 95.0
C4' O4' C1' N9 218.0 200.7
C4' O4' C1' C2' 339.4 319.6
C4' O4' C1' H1' 99.3 78.4
C3' C4' C5' H5'1 183.2 301.9
C3' C4' C5' H5'2 292.7 61.9
C5' C4' C3' O4' 239.4 241.1
C5' C4' C3' H4' 116.7 122.4
O4' C4' C3' H4' 237.3 241.3
C3' C4' O4' C1' 357.3 40.3
C1' C2' C3' C4' 324.4 359.9
O2' C2' C3' C4' 206.3 241.1
C4' C3' C2' H2' 88.4 118.6
C2' C3' C4' N8 115.4 118.8
C2' C3' C4' H3' 235.0 241.3
N8 C3' C4' H3' 119.6 122.5
C4' C3' N8 C 293.9 271.7
C4' C3' N8 HN8 113.9 91.8
H4' C4' C5' H5'1 301.6 64.3
H4' C4' C5' H5'2 51.0 184.2
C5' C4' H4' O4' 119.2 122.2
C5' C4' H4' C3' 236.8 237.4
O4' C4' H4' C3' 117.6 115.2
H4' C4' O4' C1' 238.7 281.6
H4' C4' C3' C2' 147.4 94.9
H4' C4' C3' N8 32.0 336.1
H4' C4' C3' H3' 272.4 213.6
C1' O4' C4' C3' 357.3 40.3
C1' O4' C4' H4' 238.7 281.6
N9 C1' O4' C2' 238.6 241.1
N9 C1' O4' H1' 118.7 122.3
O4' C1' N9 C4 227.8 200.2
O4' C1' N9 C8 48.2 20.5
C2' C1' O4' H1' 240.1 241.1
O4' C1' C2' O2' 155.3 142.6
O4' C1' C2' C3' 35.2 24.0
O4' C1' C2' H2' 273.0 265.3
O4' C1' N9 C2' 117.1 115.5
O4' C1' N9 H1' 237.1 237.7
C2' C1' N9 H1' 120.1 122.3
N9 C1' C2' O2' 273.7 261.6
N9 C1' C2' C3' 153.6 143.0
N9 C1' C2' H2' 31.4 24.3
C4 N9 C1' C8 179.6 179.6
C1' N9 C4 N3 0.5 0.8
C1' N9 C4 C5 180.7 179.9
C1' N9 C8 N7 179.3 180.0
C1' N9 C8 H8 359.3 359.9
C4' C3' C2' C1' 324.4 359.9
O4' C1' C2' N9 241.6 241.0
O4' C1' C2' H1' 122.9 118.8
N9 C1' C2' H1' 241.2 237.8
C2' C1' N9 C4 110.7 84.7
C2' C1' N9 C8 291.1 265.1
O2' C2' C1' C3' 120.1 118.6
O2' C2' C1' H2' 242.3 237.3
C1' C2' O2' H1 180.0 65.3
C3' C2' C1' H2' 122.2 118.7
C1' C2' C3' N8 84.2 118.6
C1' C2' C3' H3' 203.3 241.2
O4' C1' H1' N9 119.4 122.4
O4' C1' H1' C2' 241.8 244.6
N9 C1' H1' C2' 122.4 122.2
H1' C1' N9 C4 350.7 322.4
H1' C1' N9 C8 171.1 142.8
H1' C1' C2' O2' 32.4 23.8
H1' C1' C2' C3' 272.4 265.2
H1' C1' C2' H2' 150.2 146.5
C4 N9 C1' C2' 110.7 84.7
C4 N9 C1' H1' 350.7 322.4
C1' N9 C4 C8 180.3 180.3
C4 N9 C8 N7 359.6 0.3
C4 N9 C8 H8 179.6 180.2
N3 C4 N9 C5 179.7 180.9
N9 C4 N3 C2 180.4 179.6
N9 C4 C5 C6 179.5 180.2
N9 C4 C5 N7 359.7 0.4
C8 N9 C1' C2' 291.1 265.1
C8 N9 C1' H1' 171.1 142.8
C1' N9 C8 C4 179.7 179.7
C8 N9 C4 N3 180.2 180.5
C8 N9 C4 C5 0.4 359.6
C5 N7 C8 N9 0.2 360.0
N7 C8 N9 H8 180.0 180.1
N3 C4 N9 C8 180.2 180.5
N9 C4 N3 C5 180.3 179.1
N3 C4 C5 C6 359.8 359.5
N3 C4 C5 N7 179.9 179.7
C4 N3 C2 N1 0.0 359.7
C4 N3 C2 H2 180.1 179.8
C5 C4 N9 C8 0.4 359.6
N9 C4 C5 N3 179.7 180.7
C5 C4 N3 C2 0.1 0.5
N1 C6 C5 C4 0.2 0.3
N6 C6 C5 C4 180.4 180.3
C6 C5 C4 N7 179.9 179.8
C4 C5 N7 C8 0.1 359.8
C2 N3 C4 C5 0.1 0.5
N1 C2 N3 H2 180.0 180.0
N3 C2 N1 C6 0.0 0.0
N3 C2 N1 H2 180.0 180.0
C2 N1 C6 N6 179.7 180.0
C2 N1 C6 C5 359.8 360.0
N3 C2 H2 N1 180.0 180.0
H2 C2 N1 C6 180.0 180.0
C4 C5 C6 N1 0.2 0.3
C6 N1 C2 H2 180.0 180.0
N6 C6 N1 C5 179.9 180.0
N1 C6 N6 HN61 54.7 180.0
N1 C6 N6 HN62 180.0 0.0
N1 C6 C5 N7 180.1 180.0
C4 C5 C6 N6 180.4 180.3
N1 C6 N6 C5 180.1 180.0
N6 C6 C5 N7 0.2 0.0
HN61 N6 C6 HN62 234.7 180.0
C4 C5 C6 N7 180.2 180.3
N1 C6 C5 N6 179.9 180.0
C5 C6 N6 HN61 234.6 360.0
C5 C6 N6 HN62 359.9 180.0
C6 C5 N7 C8 180.3 180.0
HN61 N6 C6 C5 234.6 360.0
C6 N6 HN61 HN62 130.7 180.0
HN62 N6 C6 C5 359.9 180.0
C6 N6 HN62 HN61 234.7 180.0
N9 C8 N7 C5 0.2 360.0
C4 C5 N7 C6 179.8 179.8
C5 N7 C8 H8 180.2 180.0
N9 C8 N7 H8 180.0 179.9
N9 C8 H8 N7 180.0 180.1
C4' C3' C2' O2' 206.3 241.1
O2' C2' C1' H1' 32.4 23.8
C1' C2' O2' C3' 247.3 245.3
C1' C2' O2' H2' 124.4 122.7
C3' C2' O2' H2' 237.1 237.4
O2' C2' C3' N8 326.0 359.9
O2' C2' C3' H3' 85.1 122.5
C2' C3' C4' H4' 147.4 94.9
C4' C3' C2' N8 240.2 241.2
C4' C3' C2' H3' 121.1 118.7
C3' C2' C1' H1' 272.4 265.2
C1' C2' C3' O2' 118.1 118.7
C1' C2' C3' H2' 236.0 241.3
O2' C2' C3' H2' 117.9 122.5
C3' C2' O2' H1 292.7 180.0
N8 C3' C2' H3' 240.9 237.4
C2' C3' N8 C 181.2 156.9
C2' C3' N8 HN8 1.2 336.9
H2' C2' C1' H1' 150.2 146.5
C1' C2' H2' O2' 238.8 237.2
C1' C2' H2' C3' 115.8 114.7
O2' C2' H2' C3' 237.0 237.4
H2' C2' O2' H1 55.6 302.6
H2' C2' C3' N8 208.1 237.4
H2' C2' C3' H3' 327.2 359.9
H1 O2' C2' C3' 292.7 180.0
H1 O2' C2' H2' 55.6 302.6
N8 C3' C4' H4' 32.0 336.1
C4' C3' N8 C2' 112.7 114.8
C4' C3' N8 H3' 238.1 237.5
N8 C3' C2' H2' 208.1 237.4
C2' C3' N8 H3' 125.4 122.6
C N8 C3' HN8 180.0 180.0
C3' N8 C CA 177.7 180.0
C3' N8 C O 358.0 360.0
H3' C3' C4' H4' 272.4 213.6
C4' C3' H3' C2' 243.1 245.2
C4' C3' H3' N8 123.6 122.5
H3' C3' C2' H2' 327.2 359.9
C2' C3' H3' N8 240.5 237.3
H3' C3' N8 C 55.8 34.3
H3' C3' N8 HN8 235.8 214.3
C N8 C3' H3' 55.8 34.3
C3' N8 C HN8 180.0 180.0
N CA C N8 10.5 160.0
CB CA C N8 132.4 280.0
N8 C CA HA 251.7 40.0
CA C N8 O 179.7 180.0
HN8 N8 C3' H3' 235.8 214.3
C3' N8 HN8 C 180.0 180.0
HN8 N8 C CA 357.7 360.0
HN8 N8 C O 178.0 179.9
N8 C CA N 10.5 160.0
HN1 N CA HN2 234.7 246.3
CB CA N C 237.8 240.0
CB CA N HA 119.3 119.9
N CA CB OG 45.7 295.0
N CA CB HB1 280.5 55.1
N CA CB HB2 171.0 175.0
C CA N HA 241.5 240.0
N CA C O 190.2 340.0
CA N HN1 HN2 124.0 113.7
HN1 N CA CB 54.7 186.2
HN1 N CA C 176.9 306.3
HN1 N CA HA 295.4 66.3
CA N HN2 HN1 234.7 246.3
HN2 N CA CB 180.0 299.9
HN2 N CA C 302.2 59.9
HN2 N CA HA 60.7 180.0
N8 C CA CB 132.4 280.0
CB CA N HN1 54.7 186.2
CB CA N HN2 180.0 299.9
N CA CB C 122.6 120.0
N CA CB HA 241.2 240.1
C CA CB HA 118.5 120.0
CB CA C O 312.1 100.0
OG CB CA HB1 125.3 240.0
OG CB CA HB2 234.8 120.0
CA CB OG HOG 180.0 180.0
HB1 CB CA HB2 109.5 240.1
CA C N8 HN8 357.7 360.0
N8 C CA O 180.3 180.0
C CA N HN1 176.9 306.3
C CA N HN2 302.2 59.9
N CA C CB 238.1 240.0
N CA C HA 118.8 120.0
CB CA C HA 240.7 240.0
C CA CB OG 283.1 175.0
C CA CB HB1 157.8 295.0
C CA CB HB2 48.4 55.0
HA CA N HN1 295.4 66.3
HA CA N HN2 60.7 180.0
N CA HA CB 119.7 119.9
N CA HA C 239.6 240.0
CB CA HA C 119.9 120.0
HA CA CB OG 164.6 55.0
HA CA CB HB1 39.3 175.0
HA CA CB HB2 289.8 294.9
HA CA C O 71.4 220.0
OG CB CA C 283.1 175.0
OG CB CA HA 164.6 55.0
CA CB OG HB1 234.7 120.1
CA CB OG HB2 125.2 239.9
HB1 CB OG HB2 250.5 119.9
HB1 CB CA C 157.8 295.0
HB1 CB CA HA 39.3 175.0
CA CB HB1 OG 124.9 239.9
CA CB HB1 HB2 242.5 120.0
OG CB HB1 HB2 117.6 240.1
HB1 CB OG HOG 305.3 59.9
HB2 CB CA C 48.4 55.0
HB2 CB CA HA 289.8 294.9
CA CB HB2 OG 235.1 120.1
CA CB HB2 HB1 117.5 240.0
OG CB HB2 HB1 242.4 119.9
HB2 CB OG HOG 54.8 300.1
HOG OG CB HB1 305.3 59.9
HOG OG CB HB2 54.8 300.1
O C N8 HN8 178.0 179.9
N8 C O CA 179.7 180.0
O C CA HA 71.4 220.0