PDB Chemical Component A3P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A3P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P1 O1P 1.473 1.480
P1 O2P 1.484 1.610
P1 O3P 1.484 1.610
P1 O3' 1.601 1.609
O2P HOP2 0.951 0.966
O3P HOP3 0.951 0.967
P2 O4P 1.460 1.479
P2 O5P 1.490 1.610
P2 O6P 1.482 1.610
P2 O5' 1.619 1.610
O5P HOP5 0.950 0.967
O6P HOP6 0.950 0.967
O5' C5' 1.433 1.430
C5' C4' 1.545 1.530
C5' H5'1 1.115 1.090
C5' H5'2 1.114 1.089
C4' O4' 1.468 1.443
C4' C3' 1.542 1.543
C4' H4' 1.114 1.090
O4' C1' 1.428 1.444
C3' O3' 1.455 1.429
C3' C2' 1.537 1.547
C3' H3' 1.115 1.091
C2' O2' 1.414 1.428
C2' C1' 1.534 1.545
C2' H2' 1.115 1.090
O2' HO2' 0.950 0.967
C1' N9 1.474 1.465
C1' H1' 1.116 1.090
N9 C8 1.382 1.362
N9 C4 1.393 1.371
C8 N7 1.319 1.301
C8 H8 1.102 1.080
N7 C5 1.389 1.354
C5 C6 1.434 1.405
C5 C4 1.410 1.405
C6 N6 1.336 1.384
C6 N1 1.376 1.329
N6 HN61 1.020 0.970
N6 HN62 1.020 0.969
N1 C2 1.358 1.320
C2 N3 1.362 1.316
C2 H2 1.104 1.080
N3 C4 1.371 1.329

Bond Angles for A3P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1P P1 O2P 111.7 109.4
O1P P1 O3P 110.2 109.5
O1P P1 O3' 108.4 109.5
O2P P1 O3P 111.2 109.4
O2P P1 O3' 107.0 109.5
P1 O2P HOP2 111.7 106.9
O3P P1 O3' 108.2 109.5
P1 O3P HOP3 110.2 106.8
P1 O3' C3' 126.7 106.8
O4P P2 O5P 110.3 109.5
O4P P2 O6P 111.3 109.5
O4P P2 O5' 108.0 109.5
O5P P2 O6P 110.8 109.5
O5P P2 O5' 108.0 109.4
P2 O5P HOP5 110.3 106.8
O6P P2 O5' 108.4 109.4
P2 O6P HOP6 111.3 106.8
P2 O5' C5' 124.3 106.8
O5' C5' C4' 108.3 109.4
O5' C5' H5'1 112.7 109.5
O5' C5' H5'2 112.7 109.5
C4' C5' H5'1 112.6 109.5
C4' C5' H5'2 112.7 109.5
C5' C4' O4' 107.6 110.4
C5' C4' C3' 114.9 110.5
C5' C4' H4' 106.1 110.3
H5'1 C5' H5'2 97.8 109.5
O4' C4' C3' 106.0 104.8
O4' C4' H4' 114.9 110.4
C4' O4' C1' 109.3 105.3
C3' C4' H4' 107.7 110.4
C4' C3' O3' 107.9 110.6
C4' C3' C2' 101.0 104.1
C4' C3' H3' 118.1 110.5
O4' C1' C2' 104.1 104.9
O4' C1' N9 111.3 110.4
O4' C1' H1' 113.5 110.3
O3' C3' C2' 115.8 110.6
O3' C3' H3' 103.9 110.4
C2' C3' H3' 110.6 110.5
C3' C2' O2' 117.2 110.5
C3' C2' C1' 100.9 104.0
C3' C2' H2' 111.6 110.5
O2' C2' C1' 113.0 110.8
O2' C2' H2' 99.1 110.5
C2' O2' HO2' 117.2 106.8
C1' C2' H2' 115.9 110.4
C2' C1' N9 113.9 110.4
C2' C1' H1' 110.8 110.4
N9 C1' H1' 103.5 110.4
C1' N9 C8 129.3 126.2
C1' N9 C4 125.3 126.3
C8 N9 C4 105.4 107.5
N9 C8 N7 114.6 110.0
N9 C8 H8 124.7 125.0
N9 C4 C5 105.2 106.0
N9 C4 N3 127.8 134.9
N7 C8 H8 120.6 125.0
C8 N7 C5 103.8 109.5
N7 C5 C6 132.6 134.7
N7 C5 C4 111.0 107.1
C6 C5 C4 116.4 118.2
C5 C6 N6 123.5 120.8
C5 C6 N1 117.8 118.5
C5 C4 N3 127.1 119.0
N6 C6 N1 118.7 120.8
C6 N6 HN61 123.5 120.0
C6 N6 HN62 107.3 120.0
C6 N1 C2 119.5 121.1
HN61 N6 HN62 107.2 120.0
N1 C2 N3 128.1 122.5
N1 C2 H2 115.7 118.8
N3 C2 H2 116.1 118.7
C2 N3 C4 111.1 120.6

Torsion Angles for A3P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2P P1 O1P O3P 235.9 119.9
O2P P1 O1P O3' 117.6 240.0
O1P P1 O2P HOP2 180.0 300.0
O3P P1 O1P O3' 241.8 120.0
O1P P1 O3P HOP3 180.0 180.0
O1P P1 O3' C3' 55.0 60.0
O1P P1 O2P O3P 123.6 240.0
O1P P1 O2P O3' 241.5 120.0
O3P P1 O2P O3' 117.9 240.0
O2P P1 O3P HOP3 304.5 60.1
O2P P1 O3' C3' 294.4 180.0
O1P P1 O3P O2P 235.6 119.9
O1P P1 O3P O3' 118.3 240.0
O2P P1 O3P O3' 242.8 120.0
O3P P1 O2P HOP2 56.4 60.0
O3P P1 O3' C3' 174.5 300.0
O1P P1 O3' O2P 120.6 240.0
O1P P1 O3' O3P 240.5 120.0
O2P P1 O3' O3P 119.9 240.0
O3' P1 O2P HOP2 298.5 180.0
O3' P1 O3P HOP3 61.7 300.0
C4' C3' O3' P1 201.1 240.0
P1 O3' C3' C2' 88.8 125.3
P1 O3' C3' H3' 327.4 2.6
HOP2 O2P P1 O3P 56.4 60.0
HOP2 O2P P1 O3' 298.5 180.0
HOP3 O3P P1 O3' 61.7 300.0
O5P P2 O4P O6P 123.4 120.0
O5P P2 O4P O5' 242.2 240.0
O4P P2 O5P HOP5 180.0 300.0
O6P P2 O4P O5' 118.8 120.0
O4P P2 O6P HOP6 180.0 180.0
O4P P2 O5' C5' 71.1 60.0
O4P P2 O5P O6P 236.3 240.0
O4P P2 O5P O5' 117.8 120.0
O6P P2 O5P O5' 241.5 240.0
O5P P2 O6P HOP6 56.9 60.0
O5P P2 O5' C5' 190.4 180.0
O4P P2 O6P O5P 123.1 120.0
O4P P2 O6P O5' 241.4 240.0
O5P P2 O6P O5' 118.3 120.0
O6P P2 O5P HOP5 303.7 60.0
O6P P2 O5' C5' 310.4 300.0
O4P P2 O5' O5P 240.7 240.0
O4P P2 O5' O6P 120.7 120.0
O5P P2 O5' O6P 239.9 240.0
O5' P2 O5P HOP5 62.2 179.9
O5' P2 O6P HOP6 298.6 300.0
P2 O5' C5' C4' 188.7 180.0
P2 O5' C5' H5'1 314.0 60.0
P2 O5' C5' H5'2 63.5 300.0
HOP5 O5P P2 O6P 303.7 60.0
HOP5 O5P P2 O5' 62.2 179.9
HOP6 O6P P2 O5' 298.6 300.0
C4' C5' O5' H5'1 234.8 120.0
C4' C5' O5' H5'2 125.3 240.0
O5' C5' C4' O4' 72.6 61.4
O5' C5' C4' C3' 190.3 176.9
O5' C5' C4' H4' 309.1 299.2
H5'1 C5' O5' H5'2 250.5 120.0
O5' C5' C4' H5'1 125.3 240.0
O5' C5' C4' H5'2 234.7 120.0
H5'1 C5' C4' H5'2 109.5 240.0
O4' C4' C5' C3' 242.3 244.5
O4' C4' C5' H4' 123.5 122.2
C5' C4' O4' C1' 122.5 159.5
C3' C4' C5' H4' 241.1 237.7
C5' C4' C3' O3' 145.8 98.3
C5' C4' C3' C2' 267.7 217.0
C5' C4' C3' H3' 28.4 335.7
O5' C5' H5'1 C4' 237.2 120.0
O5' C5' H5'1 H5'2 118.6 240.0
C4' C5' H5'1 H5'2 241.4 120.0
H5'1 C5' C4' O4' 307.3 181.5
H5'1 C5' C4' C3' 65.0 297.0
H5'1 C5' C4' H4' 183.9 59.2
O5' C5' H5'2 C4' 122.9 240.0
O5' C5' H5'2 H5'1 241.4 120.0
C4' C5' H5'2 H5'1 118.5 240.0
H5'2 C5' C4' O4' 197.9 301.5
H5'2 C5' C4' C3' 315.6 57.0
H5'2 C5' C4' H4' 74.4 179.2
O4' C4' C5' H5'1 307.3 181.5
O4' C4' C5' H5'2 197.9 301.5
C5' C4' O4' C3' 123.3 119.0
C5' C4' O4' H4' 242.1 237.8
C3' C4' O4' H4' 118.8 118.9
O4' C4' C3' O3' 264.4 217.2
O4' C4' C3' C2' 26.3 336.0
O4' C4' C3' H3' 147.0 94.6
C4' O4' C1' C2' 334.5 319.6
C4' O4' C1' N9 211.3 200.7
C4' O4' C1' H1' 95.0 78.4
P1 O3' C3' C4' 201.1 240.0
C3' C4' C5' H5'1 65.0 297.0
C3' C4' C5' H5'2 315.6 57.0
C5' C4' C3' O4' 241.4 241.1
C5' C4' C3' H4' 117.9 122.2
O4' C4' C3' H4' 236.5 241.1
C3' C4' O4' C1' 359.2 40.5
O3' C3' C4' C2' 238.0 241.3
O3' C3' C4' H3' 117.4 122.6
C2' C3' C4' H3' 239.4 241.3
C4' C3' C2' O2' 196.6 241.2
C4' C3' C2' C1' 319.7 0.1
C4' C3' C2' H2' 83.4 118.6
H4' C4' C5' H5'1 183.9 59.2
H4' C4' C5' H5'2 74.4 179.2
C5' C4' H4' O4' 118.7 122.2
C5' C4' H4' C3' 236.5 237.7
O4' C4' H4' C3' 117.8 115.4
H4' C4' O4' C1' 240.4 281.6
H4' C4' C3' O3' 27.8 336.1
H4' C4' C3' C2' 149.8 94.8
H4' C4' C3' H3' 270.4 213.5
C1' O4' C4' C3' 359.2 40.5
C1' O4' C4' H4' 240.4 281.6
C3' C2' C1' O4' 41.4 23.9
O2' C2' C1' O4' 167.3 142.6
O4' C1' C2' H2' 280.7 265.3
C2' C1' O4' N9 123.2 118.9
C2' C1' O4' H1' 239.5 241.2
N9 C1' O4' H1' 116.3 122.3
O4' C1' N9 C8 61.0 27.0
O4' C1' N9 C4 241.0 207.0
O3' C3' C4' H4' 27.8 336.1
C4' C3' O3' C2' 112.3 114.7
C4' C3' O3' H3' 233.8 237.4
C2' C3' O3' H3' 121.5 122.7
O3' C3' C2' O2' 312.9 359.9
O3' C3' C2' C1' 75.9 118.9
O3' C3' C2' H2' 199.6 237.4
C2' C3' C4' H4' 149.8 94.8
C4' C3' C2' O3' 243.7 241.2
C4' C3' C2' H3' 125.9 118.6
O4' C1' C2' C3' 41.4 23.9
O3' C3' C2' H3' 242.2 237.4
O2' C2' C3' C1' 236.9 241.1
O2' C2' C3' H2' 113.2 122.6
C3' C2' O2' HO2' 180.0 180.0
C1' C2' C3' H2' 236.3 241.5
C3' C2' C1' N9 162.8 142.8
C3' C2' C1' H1' 279.0 265.0
H3' C3' C4' H4' 270.4 213.5
C4' C3' H3' O3' 119.5 122.7
C4' C3' H3' C2' 244.4 245.3
O3' C3' H3' C2' 124.9 122.7
H3' C3' C2' O2' 70.7 122.5
H3' C3' C2' C1' 193.8 241.5
H3' C3' C2' H2' 317.5 359.9
O4' C1' C2' O2' 167.3 142.6
O2' C2' C3' H3' 70.7 122.5
C3' C2' O2' C1' 116.6 114.7
C3' C2' O2' H2' 239.9 237.4
C1' C2' O2' H2' 123.3 122.7
O2' C2' C1' N9 288.7 261.5
O2' C2' C1' H1' 44.9 23.7
O4' C1' C2' N9 238.6 241.1
O4' C1' C2' H1' 122.3 118.8
C1' C2' C3' H3' 193.8 241.5
C3' C2' C1' O2' 234.1 241.3
C3' C2' C1' H2' 120.7 118.5
O2' C2' C1' H2' 246.6 237.3
C1' C2' O2' HO2' 63.3 65.3
N9 C1' C2' H1' 243.8 237.8
C2' C1' N9 C8 303.6 271.5
C2' C1' N9 C4 123.6 91.5
H2' C2' C3' H3' 317.5 359.9
C3' C2' H2' O2' 124.1 122.6
C3' C2' H2' C1' 245.3 245.5
O2' C2' H2' C1' 121.1 122.9
H2' C2' O2' HO2' 300.1 302.6
H2' C2' C1' N9 42.1 24.2
H2' C2' C1' H1' 158.3 146.5
HO2' O2' C2' C1' 63.3 65.3
HO2' O2' C2' H2' 300.1 302.6
O4' C1' N9 C2' 117.3 115.5
O4' C1' N9 H1' 237.7 237.7
N9 C1' C2' H2' 42.1 24.2
C2' C1' N9 H1' 120.4 122.2
C8 N9 C1' C4 180.0 180.0
C1' N9 C8 N7 179.9 180.0
C1' N9 C8 H8 359.9 360.0
C1' N9 C4 C5 180.1 180.2
C1' N9 C4 N3 360.0 0.1
O4' C1' H1' C2' 243.3 244.6
O4' C1' H1' N9 120.8 122.3
H1' C1' C2' H2' 158.3 146.5
C2' C1' H1' N9 237.5 237.7
H1' C1' N9 C8 183.2 149.3
H1' C1' N9 C4 3.2 329.3
C8 N9 C1' H1' 183.2 149.3
C1' N9 C8 C4 180.0 180.0
C8 N9 C4 C5 0.2 0.2
C8 N9 C4 N3 180.0 180.1
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 0.0 359.8
C4 N9 C1' H1' 3.2 329.3
C1' N9 C4 C8 180.0 180.0
C4 N9 C8 N7 359.9 0.0
C4 N9 C8 H8 179.9 180.0
N7 C5 C4 N9 359.8 359.7
C6 C5 C4 N9 179.9 180.4
C5 C4 N9 N3 180.2 180.1
C2 N3 C4 N9 180.1 179.9
N7 C8 N9 C4 359.9 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.1 179.5
C8 N7 C5 C4 0.1 0.3
H8 C8 N9 C4 179.9 180.0
N9 C8 H8 N7 180.0 180.1
H8 C8 N7 C5 180.0 179.8
N9 C4 C5 N7 359.8 359.7
C5 N7 C8 H8 180.0 179.8
C6 C5 N7 C4 180.0 179.2
N7 C5 C6 N6 0.1 0.7
N7 C5 C6 N1 180.1 180.4
N7 C5 C4 N3 180.0 179.8
N9 C4 C5 C6 179.9 180.4
N7 C5 C6 C4 180.1 180.9
C6 C5 C4 N3 0.0 0.4
N6 C6 C5 N1 180.0 180.3
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.8 359.5
C5 C6 N1 C2 360.0 0.4
N9 C4 C5 N3 179.8 179.9
N7 C5 C4 C6 180.0 179.3
C4 C5 C6 N6 180.0 179.8
C4 C5 C6 N1 0.1 359.5
C2 N3 C4 C5 359.9 359.8
N6 C6 C5 C4 180.0 179.8
C5 C6 N6 N1 180.0 179.7
N6 C6 N1 C2 180.0 180.1
HN61 N6 C6 HN62 125.2 180.2
N1 C6 C5 C4 0.1 359.5
C5 C6 N1 N6 180.0 180.3
N1 C6 N6 HN61 359.9 0.0
N1 C6 N6 HN62 234.7 179.8
C6 N1 C2 N3 359.9 359.9
C6 N1 C2 H2 180.0 180.0
HN61 N6 C6 N1 359.9 0.0
C6 N6 HN61 HN62 234.8 179.8
HN62 N6 C6 N1 234.7 179.8
C6 N6 HN62 HN61 134.5 180.2
N3 C2 N1 H2 180.0 179.9
N1 C2 N3 C4 0.1 0.0
N9 C4 N3 C2 180.1 179.9
C5 C4 N3 C2 359.9 359.8
N1 C2 N3 H2 180.0 180.1
N1 C2 H2 N3 180.0 179.9
H2 C2 N3 C4 180.1 179.9
N9 C4 N3 C5 180.2 180.1
C4 N3 C2 H2 180.1 179.9