PDB Chemical Component A3M
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A3M
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.604 |
1.543 |
C1 |
C5 |
1.594 |
1.551 |
C1 |
HC11 |
1.115 |
1.090 |
C1 |
HC12 |
1.115 |
1.089 |
C2 |
N3 |
1.473 |
1.470 |
C2 |
HC21 |
1.115 |
1.090 |
C2 |
HC22 |
1.116 |
1.089 |
N3 |
C4 |
1.482 |
1.473 |
N3 |
C14 |
1.462 |
1.347 |
C4 |
C5 |
1.549 |
1.551 |
C4 |
HC41 |
1.115 |
1.090 |
C4 |
HC42 |
1.115 |
1.090 |
C5 |
HC51 |
1.114 |
1.090 |
C5 |
HC52 |
1.114 |
1.090 |
C14 |
C15 |
1.470 |
1.507 |
C14 |
O18 |
1.375 |
1.212 |
C15 |
C16 |
1.502 |
1.529 |
C15 |
N19 |
1.500 |
1.468 |
C15 |
H15 |
1.115 |
1.089 |
C16 |
C17 |
1.471 |
1.530 |
C16 |
C26 |
1.692 |
1.530 |
C16 |
H16 |
1.115 |
1.090 |
C17 |
H171 |
1.115 |
1.090 |
C17 |
H172 |
1.115 |
1.089 |
C17 |
H173 |
1.115 |
1.090 |
N19 |
H191 |
1.020 |
1.009 |
N19 |
H192 |
1.020 |
1.010 |
C26 |
H261 |
1.115 |
1.090 |
C26 |
H262 |
1.115 |
1.090 |
C26 |
H263 |
1.116 |
1.089 |
Bond Angles for A3M
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C5 |
103.2 |
102.9 |
C2 |
C1 |
HC11 |
114.6 |
110.8 |
C2 |
C1 |
HC12 |
114.6 |
110.8 |
C1 |
C2 |
N3 |
104.8 |
107.3 |
C1 |
C2 |
HC21 |
114.0 |
109.9 |
C1 |
C2 |
HC22 |
114.0 |
109.8 |
C5 |
C1 |
HC11 |
114.6 |
110.7 |
C5 |
C1 |
HC12 |
114.6 |
110.7 |
C1 |
C5 |
C4 |
99.4 |
101.5 |
C1 |
C5 |
HC51 |
116.1 |
111.0 |
C1 |
C5 |
HC52 |
116.1 |
111.1 |
HC11 |
C1 |
HC12 |
95.9 |
110.7 |
N3 |
C2 |
HC21 |
114.0 |
109.9 |
N3 |
C2 |
HC22 |
114.0 |
109.9 |
C2 |
N3 |
C4 |
104.6 |
108.7 |
C2 |
N3 |
C14 |
113.6 |
125.6 |
HC21 |
C2 |
HC22 |
96.5 |
110.0 |
C4 |
N3 |
C14 |
116.9 |
125.7 |
N3 |
C4 |
C5 |
101.5 |
104.7 |
N3 |
C4 |
HC41 |
115.2 |
110.7 |
N3 |
C4 |
HC42 |
115.2 |
110.2 |
N3 |
C14 |
C15 |
127.0 |
120.0 |
N3 |
C14 |
O18 |
117.4 |
120.0 |
C5 |
C4 |
HC41 |
115.3 |
110.4 |
C5 |
C4 |
HC42 |
115.3 |
110.4 |
C4 |
C5 |
HC51 |
116.1 |
111.2 |
C4 |
C5 |
HC52 |
116.0 |
110.9 |
HC41 |
C4 |
HC42 |
95.2 |
110.4 |
HC51 |
C5 |
HC52 |
94.4 |
110.9 |
C15 |
C14 |
O18 |
115.6 |
120.0 |
C14 |
C15 |
C16 |
118.4 |
109.5 |
C14 |
C15 |
N19 |
111.3 |
109.5 |
C14 |
C15 |
H15 |
100.9 |
109.5 |
C16 |
C15 |
N19 |
107.1 |
109.5 |
C16 |
C15 |
H15 |
105.6 |
109.4 |
C15 |
C16 |
C17 |
114.9 |
109.5 |
C15 |
C16 |
C26 |
110.3 |
109.5 |
C15 |
C16 |
H16 |
103.8 |
109.5 |
N19 |
C15 |
H15 |
113.6 |
109.5 |
C15 |
N19 |
H191 |
111.3 |
106.7 |
C15 |
N19 |
H192 |
111.6 |
106.7 |
C17 |
C16 |
C26 |
105.1 |
109.4 |
C17 |
C16 |
H16 |
109.2 |
109.5 |
C16 |
C17 |
H171 |
114.9 |
109.5 |
C16 |
C17 |
H172 |
110.2 |
109.4 |
C16 |
C17 |
H173 |
110.2 |
109.4 |
C26 |
C16 |
H16 |
113.8 |
109.4 |
C16 |
C26 |
H261 |
110.3 |
109.4 |
C16 |
C26 |
H262 |
111.9 |
109.4 |
C16 |
C26 |
H263 |
111.9 |
109.5 |
H171 |
C17 |
H172 |
110.3 |
109.5 |
H171 |
C17 |
H173 |
110.2 |
109.5 |
H172 |
C17 |
H173 |
100.1 |
109.5 |
H191 |
N19 |
H192 |
111.5 |
106.7 |
H261 |
C26 |
H262 |
111.9 |
109.5 |
H261 |
C26 |
H263 |
111.8 |
109.5 |
H262 |
C26 |
H263 |
98.5 |
109.4 |
Torsion Angles for A3M
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
C1 |
C2 |
HC11 |
234.7 |
241.7 |
C5 |
C1 |
C2 |
HC12 |
125.3 |
118.4 |
C2 |
C1 |
C5 |
C4 |
28.2 |
324.3 |
C2 |
C1 |
C5 |
HC51 |
153.4 |
82.6 |
C2 |
C1 |
C5 |
HC52 |
263.0 |
206.4 |
HC11 |
C1 |
C2 |
HC12 |
250.6 |
236.7 |
N3 |
C2 |
C1 |
HC21 |
234.7 |
119.4 |
N3 |
C2 |
C1 |
HC22 |
125.3 |
240.5 |
C1 |
C2 |
N3 |
C4 |
328.8 |
1.3 |
C1 |
C2 |
N3 |
C14 |
200.2 |
181.0 |
HC21 |
C2 |
C1 |
HC22 |
250.5 |
121.1 |
C2 |
C1 |
C5 |
HC11 |
125.3 |
118.4 |
C2 |
C1 |
C5 |
HC12 |
234.7 |
241.6 |
C5 |
C1 |
C2 |
N3 |
0.6 |
22.2 |
C5 |
C1 |
C2 |
HC21 |
125.9 |
262.8 |
C5 |
C1 |
C2 |
HC22 |
235.3 |
141.6 |
HC11 |
C1 |
C5 |
HC12 |
109.5 |
123.2 |
N3 |
C4 |
C5 |
C1 |
312.1 |
37.3 |
C1 |
C5 |
C4 |
HC41 |
186.9 |
278.2 |
C1 |
C5 |
C4 |
HC42 |
77.3 |
155.9 |
C4 |
C5 |
C1 |
HC51 |
234.8 |
241.8 |
C4 |
C5 |
C1 |
HC52 |
125.2 |
117.9 |
HC51 |
C5 |
C1 |
HC52 |
250.5 |
236.2 |
C2 |
C1 |
HC11 |
C5 |
241.0 |
246.5 |
C2 |
C1 |
HC11 |
HC12 |
120.5 |
123.3 |
HC11 |
C1 |
C2 |
N3 |
125.8 |
140.5 |
HC11 |
C1 |
C2 |
HC21 |
251.1 |
21.1 |
HC11 |
C1 |
C2 |
HC22 |
0.6 |
260.0 |
C5 |
C1 |
HC11 |
HC12 |
239.5 |
236.8 |
HC11 |
C1 |
C5 |
C4 |
262.9 |
206.0 |
HC11 |
C1 |
C5 |
HC51 |
28.2 |
324.2 |
HC11 |
C1 |
C5 |
HC52 |
137.7 |
88.0 |
C2 |
C1 |
HC12 |
C5 |
119.0 |
113.5 |
C2 |
C1 |
HC12 |
HC11 |
239.5 |
236.7 |
HC12 |
C1 |
C2 |
N3 |
235.3 |
263.8 |
HC12 |
C1 |
C2 |
HC21 |
0.6 |
144.4 |
HC12 |
C1 |
C2 |
HC22 |
110.0 |
23.3 |
C5 |
C1 |
HC12 |
HC11 |
120.5 |
123.1 |
HC12 |
C1 |
C5 |
C4 |
153.4 |
82.8 |
HC12 |
C1 |
C5 |
HC51 |
278.7 |
201.0 |
HC12 |
C1 |
C5 |
HC52 |
28.2 |
324.8 |
N3 |
C2 |
C1 |
C5 |
0.6 |
22.2 |
N3 |
C2 |
C1 |
HC11 |
125.8 |
140.5 |
N3 |
C2 |
C1 |
HC12 |
235.3 |
263.8 |
C1 |
C2 |
N3 |
HC21 |
125.3 |
240.6 |
C1 |
C2 |
N3 |
HC22 |
234.7 |
119.4 |
HC21 |
C2 |
N3 |
HC22 |
109.4 |
238.8 |
C4 |
N3 |
C2 |
C14 |
128.6 |
180.3 |
C2 |
N3 |
C4 |
C5 |
50.9 |
335.5 |
C2 |
N3 |
C4 |
HC41 |
176.2 |
94.5 |
C2 |
N3 |
C4 |
HC42 |
285.6 |
216.8 |
C2 |
N3 |
C14 |
C15 |
303.3 |
180.0 |
C2 |
N3 |
C14 |
O18 |
123.0 |
0.0 |
HC21 |
C2 |
C1 |
C5 |
125.9 |
262.8 |
HC21 |
C2 |
C1 |
HC11 |
251.1 |
21.1 |
HC21 |
C2 |
C1 |
HC12 |
0.6 |
144.4 |
C1 |
C2 |
HC21 |
N3 |
239.7 |
117.8 |
C1 |
C2 |
HC21 |
HC22 |
119.9 |
239.0 |
N3 |
C2 |
HC21 |
HC22 |
240.2 |
121.2 |
HC21 |
C2 |
N3 |
C4 |
203.5 |
120.7 |
HC21 |
C2 |
N3 |
C14 |
74.9 |
300.4 |
HC22 |
C2 |
C1 |
C5 |
235.3 |
141.6 |
HC22 |
C2 |
C1 |
HC11 |
0.6 |
260.0 |
HC22 |
C2 |
C1 |
HC12 |
110.0 |
23.3 |
C1 |
C2 |
HC22 |
N3 |
120.2 |
242.2 |
C1 |
C2 |
HC22 |
HC21 |
240.1 |
121.0 |
N3 |
C2 |
HC22 |
HC21 |
119.9 |
238.9 |
HC22 |
C2 |
N3 |
C4 |
94.1 |
241.9 |
HC22 |
C2 |
N3 |
C14 |
325.4 |
61.6 |
C1 |
C5 |
C4 |
N3 |
312.1 |
37.3 |
C4 |
N3 |
C2 |
HC21 |
203.5 |
120.7 |
C4 |
N3 |
C2 |
HC22 |
94.1 |
241.9 |
C2 |
N3 |
C4 |
C14 |
233.5 |
179.7 |
C4 |
N3 |
C14 |
C15 |
181.3 |
359.6 |
C4 |
N3 |
C14 |
O18 |
1.0 |
179.7 |
C5 |
C4 |
N3 |
HC41 |
234.7 |
241.1 |
C5 |
C4 |
N3 |
HC42 |
125.3 |
118.7 |
N3 |
C4 |
C5 |
HC51 |
186.9 |
279.2 |
N3 |
C4 |
C5 |
HC52 |
77.3 |
155.4 |
HC41 |
C4 |
N3 |
HC42 |
250.6 |
237.6 |
C14 |
N3 |
C2 |
HC21 |
74.9 |
300.4 |
C14 |
N3 |
C2 |
HC22 |
325.4 |
61.6 |
C2 |
N3 |
C14 |
C4 |
122.0 |
180.4 |
C14 |
N3 |
C4 |
C5 |
177.5 |
155.9 |
C14 |
N3 |
C4 |
HC41 |
302.7 |
274.8 |
C14 |
N3 |
C4 |
HC42 |
52.2 |
37.2 |
C15 |
C14 |
N3 |
O18 |
180.3 |
180.0 |
N3 |
C14 |
C15 |
C16 |
260.1 |
270.1 |
N3 |
C14 |
C15 |
N19 |
135.4 |
150.0 |
N3 |
C14 |
C15 |
H15 |
14.6 |
30.0 |
C4 |
C5 |
C1 |
HC11 |
262.9 |
206.0 |
C4 |
C5 |
C1 |
HC12 |
153.4 |
82.8 |
C1 |
C5 |
C4 |
HC51 |
125.2 |
118.1 |
C1 |
C5 |
C4 |
HC52 |
234.8 |
242.0 |
C5 |
C4 |
N3 |
C14 |
177.5 |
155.9 |
N3 |
C4 |
C5 |
HC41 |
125.2 |
119.1 |
N3 |
C4 |
C5 |
HC42 |
234.8 |
241.5 |
HC41 |
C4 |
C5 |
HC42 |
109.5 |
122.3 |
HC51 |
C5 |
C4 |
HC52 |
109.6 |
123.8 |
HC41 |
C4 |
N3 |
C14 |
302.7 |
274.8 |
N3 |
C4 |
HC41 |
C5 |
242.2 |
244.5 |
N3 |
C4 |
HC41 |
HC42 |
121.0 |
122.2 |
C5 |
C4 |
HC41 |
HC42 |
238.9 |
237.7 |
HC41 |
C4 |
C5 |
HC51 |
61.6 |
160.1 |
HC41 |
C4 |
C5 |
HC52 |
312.1 |
36.2 |
HC42 |
C4 |
N3 |
C14 |
52.2 |
37.2 |
N3 |
C4 |
HC42 |
C5 |
117.8 |
115.2 |
N3 |
C4 |
HC42 |
HC41 |
239.0 |
237.5 |
C5 |
C4 |
HC42 |
HC41 |
121.1 |
122.3 |
HC42 |
C4 |
C5 |
HC51 |
312.1 |
37.7 |
HC42 |
C4 |
C5 |
HC52 |
202.6 |
273.9 |
HC51 |
C5 |
C1 |
HC11 |
28.2 |
324.2 |
HC51 |
C5 |
C1 |
HC12 |
278.7 |
201.0 |
C1 |
C5 |
HC51 |
C4 |
243.8 |
247.8 |
C1 |
C5 |
HC51 |
HC52 |
121.9 |
123.9 |
HC51 |
C5 |
C4 |
HC41 |
61.6 |
160.1 |
HC51 |
C5 |
C4 |
HC42 |
312.1 |
37.7 |
C4 |
C5 |
HC51 |
HC52 |
238.1 |
236.1 |
HC52 |
C5 |
C1 |
HC11 |
137.7 |
88.0 |
HC52 |
C5 |
C1 |
HC12 |
28.2 |
324.8 |
C1 |
C5 |
HC52 |
C4 |
116.2 |
112.1 |
C1 |
C5 |
HC52 |
HC51 |
238.1 |
236.1 |
HC52 |
C5 |
C4 |
HC41 |
312.1 |
36.2 |
HC52 |
C5 |
C4 |
HC42 |
202.6 |
273.9 |
C4 |
C5 |
HC52 |
HC51 |
121.9 |
124.0 |
N3 |
C14 |
C15 |
O18 |
179.7 |
180.0 |
C16 |
C15 |
C14 |
N19 |
124.7 |
120.0 |
C16 |
C15 |
C14 |
H15 |
245.5 |
240.0 |
C14 |
C15 |
C16 |
C17 |
61.4 |
180.0 |
C14 |
C15 |
C16 |
C26 |
180.0 |
299.9 |
C14 |
C15 |
C16 |
H16 |
302.3 |
59.9 |
N19 |
C15 |
C14 |
H15 |
120.8 |
120.0 |
C14 |
C15 |
N19 |
H191 |
180.0 |
60.0 |
C14 |
C15 |
N19 |
H192 |
54.7 |
173.8 |
N3 |
C14 |
O18 |
C15 |
180.2 |
180.0 |
O18 |
C14 |
C15 |
C16 |
80.3 |
90.0 |
O18 |
C14 |
C15 |
N19 |
315.6 |
330.0 |
O18 |
C14 |
C15 |
H15 |
194.8 |
210.0 |
C16 |
C15 |
C14 |
O18 |
80.3 |
90.0 |
C14 |
C15 |
C16 |
N19 |
233.3 |
240.0 |
C14 |
C15 |
C16 |
H15 |
112.0 |
120.0 |
N19 |
C15 |
C16 |
H15 |
238.7 |
240.0 |
C16 |
C15 |
N19 |
H191 |
49.2 |
300.0 |
C16 |
C15 |
N19 |
H192 |
283.9 |
53.7 |
C17 |
C16 |
C15 |
C26 |
241.5 |
240.0 |
C17 |
C16 |
C15 |
H16 |
119.1 |
120.0 |
C15 |
C16 |
C17 |
H171 |
180.0 |
180.0 |
C15 |
C16 |
C17 |
H172 |
305.2 |
300.0 |
C15 |
C16 |
C17 |
H173 |
54.8 |
60.0 |
C26 |
C16 |
C15 |
H16 |
237.7 |
240.0 |
C15 |
C16 |
C26 |
H261 |
179.9 |
300.0 |
C15 |
C16 |
C26 |
H262 |
305.3 |
60.0 |
C15 |
C16 |
C26 |
H263 |
54.8 |
180.0 |
N19 |
C15 |
C14 |
O18 |
315.6 |
330.0 |
C14 |
C15 |
N19 |
C16 |
130.9 |
120.0 |
C14 |
C15 |
N19 |
H15 |
247.0 |
240.0 |
C16 |
C15 |
N19 |
H15 |
116.1 |
120.0 |
N19 |
C15 |
C16 |
C17 |
188.1 |
300.0 |
N19 |
C15 |
C16 |
C26 |
306.7 |
60.0 |
N19 |
C15 |
C16 |
H16 |
69.0 |
180.0 |
H191 |
N19 |
C15 |
H192 |
125.3 |
246.2 |
H15 |
C15 |
C14 |
O18 |
194.8 |
210.0 |
C14 |
C15 |
H15 |
C16 |
236.2 |
240.0 |
C14 |
C15 |
H15 |
N19 |
119.1 |
120.0 |
C16 |
C15 |
H15 |
N19 |
243.0 |
240.0 |
H15 |
C15 |
C16 |
C17 |
309.5 |
60.0 |
H15 |
C15 |
C16 |
C26 |
68.0 |
180.0 |
H15 |
C15 |
C16 |
H16 |
190.3 |
300.0 |
H15 |
C15 |
N19 |
H191 |
293.0 |
180.0 |
H15 |
C15 |
N19 |
H192 |
167.7 |
293.8 |
C17 |
C16 |
C15 |
N19 |
188.1 |
300.0 |
C17 |
C16 |
C15 |
H15 |
309.5 |
60.0 |
C15 |
C16 |
C17 |
C26 |
121.4 |
120.0 |
C15 |
C16 |
C17 |
H16 |
243.9 |
239.9 |
C26 |
C16 |
C17 |
H16 |
122.5 |
119.9 |
C17 |
C16 |
C26 |
H261 |
304.3 |
60.1 |
C17 |
C16 |
C26 |
H262 |
69.7 |
180.0 |
C17 |
C16 |
C26 |
H263 |
179.2 |
300.0 |
H171 |
C17 |
C16 |
H172 |
234.8 |
240.0 |
H171 |
C17 |
C16 |
H173 |
125.2 |
120.0 |
H172 |
C17 |
C16 |
H173 |
250.5 |
240.0 |
C26 |
C16 |
C15 |
N19 |
306.7 |
60.0 |
C26 |
C16 |
C15 |
H15 |
68.0 |
180.0 |
C15 |
C16 |
C26 |
C17 |
235.6 |
240.0 |
C15 |
C16 |
C26 |
H16 |
116.2 |
120.0 |
C17 |
C16 |
C26 |
H16 |
240.6 |
240.1 |
C26 |
C16 |
C17 |
H171 |
58.6 |
60.0 |
C26 |
C16 |
C17 |
H172 |
183.8 |
180.0 |
C26 |
C16 |
C17 |
H173 |
293.3 |
300.0 |
H261 |
C26 |
C16 |
H262 |
234.6 |
240.0 |
H261 |
C26 |
C16 |
H263 |
125.2 |
120.1 |
H262 |
C26 |
C16 |
H263 |
250.5 |
240.0 |
H16 |
C16 |
C15 |
N19 |
69.0 |
180.0 |
H16 |
C16 |
C15 |
H15 |
190.3 |
300.0 |
C15 |
C16 |
H16 |
C17 |
123.0 |
120.1 |
C15 |
C16 |
H16 |
C26 |
240.1 |
240.0 |
C17 |
C16 |
H16 |
C26 |
117.1 |
119.9 |
H16 |
C16 |
C17 |
H171 |
296.1 |
300.1 |
H16 |
C16 |
C17 |
H172 |
61.3 |
60.1 |
H16 |
C16 |
C17 |
H173 |
170.9 |
180.1 |
H16 |
C16 |
C26 |
H261 |
63.7 |
180.0 |
H16 |
C16 |
C26 |
H262 |
189.1 |
300.0 |
H16 |
C16 |
C26 |
H263 |
298.6 |
59.9 |
H171 |
C17 |
C16 |
C26 |
58.6 |
60.0 |
H171 |
C17 |
C16 |
H16 |
296.1 |
300.1 |
C16 |
C17 |
H171 |
H172 |
125.2 |
120.0 |
C16 |
C17 |
H171 |
H173 |
234.8 |
240.0 |
H172 |
C17 |
H171 |
H173 |
109.6 |
120.1 |
H172 |
C17 |
C16 |
C26 |
183.8 |
180.0 |
H172 |
C17 |
C16 |
H16 |
61.3 |
60.1 |
C16 |
C17 |
H172 |
H171 |
232.2 |
240.0 |
C16 |
C17 |
H172 |
H173 |
116.1 |
120.0 |
H171 |
C17 |
H172 |
H173 |
243.9 |
240.0 |
H173 |
C17 |
C16 |
C26 |
293.3 |
300.0 |
H173 |
C17 |
C16 |
H16 |
170.9 |
180.1 |
C16 |
C17 |
H173 |
H171 |
127.8 |
120.0 |
C16 |
C17 |
H173 |
H172 |
243.9 |
240.0 |
H171 |
C17 |
H173 |
H172 |
116.1 |
120.0 |
H191 |
N19 |
C15 |
H15 |
293.0 |
180.0 |
C15 |
N19 |
H191 |
H192 |
234.7 |
113.7 |
H192 |
N19 |
C15 |
H15 |
167.7 |
293.8 |
C15 |
N19 |
H192 |
H191 |
125.2 |
246.3 |
H261 |
C26 |
C16 |
H16 |
63.7 |
180.0 |
C16 |
C26 |
H261 |
H262 |
125.4 |
119.9 |
C16 |
C26 |
H261 |
H263 |
234.8 |
239.9 |
H262 |
C26 |
H261 |
H263 |
109.4 |
120.0 |
H262 |
C26 |
C16 |
H16 |
189.1 |
300.0 |
C16 |
C26 |
H262 |
H261 |
235.5 |
240.1 |
C16 |
C26 |
H262 |
H263 |
117.8 |
120.0 |
H261 |
C26 |
H262 |
H263 |
242.3 |
240.0 |
H263 |
C26 |
C16 |
H16 |
298.6 |
59.9 |
C16 |
C26 |
H263 |
H261 |
124.4 |
120.0 |
C16 |
C26 |
H263 |
H262 |
242.2 |
240.0 |
H261 |
C26 |
H263 |
H262 |
117.8 |
120.0 |