Atom Nomenclature for A31

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for A31

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
N12 N12
O13 O13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
N22 N22
C23 C23
O24 O24
C25 C25
C26 C26
C27 C27
C28 C28
O29 O29
N30 N30
C31 C31
C32 C32
C33 C33
O34 O34
C35 C35
C36 C36
O37 O37
C38 C38
C39 C39
O40 O40
C41 C41
C42 C42
C43 C43
N44 N44
C45 C45
O46 O46
C47 C47
C48 C48
C49 C49
C50 C50
C51 C51
S52 S52
C53 C53
C54 C54
N56 N56
C57 C57
N58 N58
C59 C59
O59 O59
H2 H2
H2A H2A
H3 H3
H4 H4
H4A H4A
H5 H5
H6 H6
H6A H6A
H7 H7
H7A H7A
H8 H8
H8A H8A
H9 H9
H9A H9A
H10 H10
HN12 HN12
H14 H14
H14A H14A
H15 H15
H15A H15A
H16 H16
H16A H16A
H17 H17
H17A H17A
H18 H18
H18A H18A
H19 H19
H19A H19A
H20 H20
H20A H20A
H21 H21
H21A H21A
HN22 HN22
H25 H25
H25A H25A
H26 H26
H26A H26A
H27 H27
H27A H27A
HN30 HN30
H31 H31
H31A H31A
H32 H32
H32A H32A
H33 H33
H33A H33A
H35 H35
H35A H35A
H36 H36
H36A H36A
H38 H38
H38A H38A
H39 H39
H39A H39A
H41 H41
H41A H41A
H42 H42
H42A H42A
H43 H43
H43A H43A
HN44 HN44
H47 H47
H47A H47A
H48 H48
H48A H48A
H49 H49
H49A H49A
H50 H50
H50A H50A
H51 H51
H53 H53
H53A H53A
H54 H54
HN56 HN56
HN58 HN58
H59 H59