PDB Chemical Component A2L

Ideal Model

Chemical Description

Name 3'-O-METHYOXYETHYL-ADENOSINE 5'-MONOPHOSPHATE
Formula C13 H20 N5 O8 P
Formal charge 0
Molecular weight 405.300 g/mol
Component type RNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C2' C1' C4' C3'
Observed leaving atoms OP3
Bond count 49
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 3'-O-(2-methoxyethyl)adenosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(2-methoxyethoxy)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) COCCO[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23
SMILES (CACTVS) COCCO[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c(N)ncnc23
Stereo SMILES (OpenEye) COCCO[C@@H]1[C@H](O[C@H]([C@@H]1O)n2cnc3c2ncnc3N)COP(=O)(O)O
InChI descriptor InChI=1S/C13H20N5O8P/c1-23-2-3-24-10-7(4-25-27(20,21)22)26-13(9(10)19)18-6-17-8-11(14)15-5-16-12(8)18/h5-7,9-10,13,19H,2-4H2,1H3,(H2,14,15,16)(H2,20,21,22)/t7-,9-,10-,13-/m1/s1
InChIKey descriptor LISGIEGLNMXMPT-QYVSTXNMSA-N

Status Information

Last modified 2011-06-04
Created 2004-10-29
Release status REL
Processing site RCSB