PDB Chemical Component A2L

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A2L

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O2' C2' 1.414 1.426
O2' HO2' 0.950 0.974
C2' C1' 1.525 1.529
C2' C3' 1.532 1.517
C2' H2' 1.088 1.095
C1' O4' 1.426 1.444
C1' N9 1.476 1.464
C1' H1' 1.076 1.095
O4' C4' 1.421 1.437
C4' C5' 1.548 1.517
C4' C3' 1.532 1.519
C4' H4' 1.083 1.097
C5' O5' 1.418 1.417
C5' H5' 1.090 1.091
C5' H5'' 1.086 1.091
O5' P 1.614 1.619
P OP1 1.479 1.501
P OP3   1.617
P OP2 1.479 1.617
OP3 HOP3   0.981
OP2 HOP2 0.950 0.980
C3' O3' 1.426 1.412
C3' H3' 1.072 1.097
O3' CA' 1.421 1.419
CA' CB' 1.530 1.516
CA' HA'1 1.089 1.095
CA' HA'2 1.091 1.094
CB' OC' 1.418 1.422
CB' HB'1 1.090 1.094
CB' HB'2 1.090 1.095
OC' CD' 1.416 1.421
CD' HD'1 1.091 1.092
CD' HD'2 1.091 1.092
CD' HD'3 1.091 1.093
N9 C8 1.369 1.371
N9 C4 1.373 1.367
C8 N7 1.303 1.316
C8 H8 1.078 1.082
N7 C5 1.390 1.372
C5 C4 1.373 1.385
C5 C6 1.413 1.392
C4 N3 1.362 1.342
N3 C2 1.328 1.350
C2 N1 1.333 1.355
C2 H2 1.077 1.085
N1 C6 1.346 1.355
C6 N6 1.333 1.405
N6 H61 1.010 1.002
N6 H62 1.009 1.003

Bond Angles for A2L

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2' O2' HO2' 112.5 107.3
O2' C2' C1' 112.5 109.3
O2' C2' C3' 110.3 111.2
O2' C2' H2' 110.6 106.9
C1' C2' C3' 102.1 102.9
C1' C2' H2' 111.5 114.0
C2' C1' O4' 105.4 107.6
C2' C1' N9 121.1 113.7
C2' C1' H1' 108.2 112.6
C3' C2' H2' 109.4 112.6
C2' C3' C4' 102.4 102.2
C2' C3' O3' 113.9 113.5
C2' C3' H3' 108.0 109.5
O4' C1' N9 97.7 109.4
O4' C1' H1' 108.9 108.2
C1' O4' C4' 110.3 108.3
N9 C1' H1' 114.0 105.2
C1' N9 C8 130.6 126.1
C1' N9 C4 124.0 126.9
O4' C4' C5' 116.9 109.8
O4' C4' C3' 98.6 105.2
O4' C4' H4' 108.6 108.3
C5' C4' C3' 116.3 113.5
C5' C4' H4' 104.6 108.7
C4' C5' O5' 113.0 108.7
C4' C5' H5' 108.5 110.1
C4' C5' H5'' 109.8 110.1
C3' C4' H4' 111.8 111.2
C4' C3' O3' 108.1 112.2
C4' C3' H3' 113.1 110.2
O5' C5' H5' 109.0 109.1
O5' C5' H5'' 109.5 109.2
C5' O5' P 122.7 118.5
H5' C5' H5'' 106.9 109.6
O5' P OP1 108.3 115.0
O5' P OP3   103.7
O5' P OP2 107.5 102.9
OP1 P OP3   115.3
OP1 P OP2 119.4 115.0
OP3 P OP2   103.3
P OP3 HOP3   118.9
P OP2 HOP2 107.5 119.0
O3' C3' H3' 111.0 109.0
C3' O3' CA' 112.9 111.3
O3' CA' CB' 109.9 109.1
O3' CA' HA'1 110.3 108.2
O3' CA' HA'2 109.9 108.2
CB' CA' HA'1 108.5 111.1
CB' CA' HA'2 109.6 110.5
CA' CB' OC' 110.9 109.0
CA' CB' HB'1 108.9 111.1
CA' CB' HB'2 108.6 110.5
HA'1 CA' HA'2 108.7 109.7
OC' CB' HB'1 110.3 108.2
OC' CB' HB'2 109.2 108.3
CB' OC' CD' 111.7 111.5
HB'1 CB' HB'2 109.0 109.7
OC' CD' HD'1 110.0 109.6
OC' CD' HD'2 109.2 109.5
OC' CD' HD'3 110.1 108.9
HD'1 CD' HD'2 109.0 110.1
HD'1 CD' HD'3 109.6 109.3
HD'2 CD' HD'3 109.0 109.4
C8 N9 C4 105.4 107.0
N9 C8 N7 114.2 112.2
N9 C8 H8 122.1 122.2
N9 C4 C5 106.1 105.2
N9 C4 N3 126.8 127.5
N7 C8 H8 123.7 125.6
C8 N7 C5 103.6 104.8
N7 C5 C4 110.7 110.8
N7 C5 C6 133.7 132.4
C4 C5 C6 115.4 116.9
C5 C4 N3 127.1 127.2
C5 C6 N1 119.1 119.1
C5 C6 N6 123.4 120.7
C4 N3 C2 111.2 110.5
N3 C2 N1 128.3 128.9
N3 C2 H2 115.2 115.6
N1 C2 H2 116.5 115.5
C2 N1 C6 118.7 117.5
N1 C6 N6 117.4 120.2
C6 N6 H61 119.1 119.5
C6 N6 H62 119.8 119.4
H61 N6 H62 121.1 120.8

Torsion Angles for A2L

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1' C2' O2' C3' 246.6 247.1
C1' C2' O2' H2' 125.4 123.8
O2' C2' C1' O4' 126.8 100.1
O2' C2' C1' N9 236.0 221.5
O2' C2' C1' H1' 10.4 340.9
C3' C2' O2' H2' 238.8 236.7
O2' C2' C3' C4' 207.6 275.9
O2' C2' C3' O3' 324.0 36.9
O2' C2' C3' H3' 87.9 159.0
HO2' O2' C2' C1' 180.0 54.7
HO2' O2' C2' C3' 293.4 167.5
HO2' O2' C2' H2' 54.6 290.8
C1' C2' O2' HO2' 180.0 54.7
O2' C2' C1' C3' 118.3 118.2
O2' C2' C1' H2' 235.1 240.5
C3' C2' C1' H2' 116.7 122.2
C1' C2' C3' C4' 327.4 32.8
C1' C2' C3' O3' 83.9 153.8
C1' C2' C3' H3' 207.7 275.9
O4' C1' C2' N9 250.8 238.7
O4' C1' C2' H1' 116.4 119.2
C2' C1' O4' C4' 21.5 355.0
N9 C1' C2' H1' 225.6 240.5
C2' C1' N9 C8 349.0 273.6
C2' C1' N9 C4 169.1 93.6
C3' C2' O2' HO2' 293.4 167.5
O2' C2' C3' C1' 240.1 243.2
O2' C2' C3' H2' 121.9 120.0
C1' C2' C3' H2' 241.8 236.8
C3' C2' C1' O4' 8.5 341.9
C3' C2' C1' N9 117.7 103.2
C3' C2' C1' H1' 252.1 222.7
O4' C4' C3' C2' 44.6 323.0
C5' C4' C3' C2' 278.7 202.9
C2' C3' C4' H4' 158.6 79.9
C4' C3' C2' O3' 243.5 239.0
C4' C3' C2' H3' 119.7 116.9
O3' C3' C2' H3' 236.2 237.9
C2' C3' O3' CA' 160.4 60.0
H2' C2' O2' HO2' 54.6 290.8
O2' C2' H2' C1' 126.0 120.8
O2' C2' H2' C3' 238.2 237.5
C1' C2' H2' C3' 112.2 116.7
H2' C2' C1' O4' 251.7 219.6
H2' C2' C1' N9 0.9 341.0
H2' C2' C1' H1' 135.3 100.5
H2' C2' C3' C4' 85.6 156.0
H2' C2' C3' O3' 202.1 276.9
H2' C2' C3' H3' 326.0 39.0
O4' C1' C2' C3' 8.5 341.9
O4' C1' C2' H2' 251.7 219.6
C2' C1' O4' N9 125.3 124.0
C2' C1' O4' H1' 244.1 238.0
N9 C1' O4' H1' 118.7 114.1
O4' C1' N9 C8 102.3 33.9
O4' C1' N9 C4 282.3 213.9
C1' O4' C4' C5' 83.9 148.9
C1' O4' C4' C3' 318.5 26.4
C1' O4' C4' H4' 201.9 267.4
N9 C1' C2' C3' 117.7 103.2
N9 C1' C2' H2' 0.9 341.0
C2' C1' N9 O4' 246.7 239.7
C2' C1' N9 H1' 132.0 123.6
O4' C1' N9 H1' 245.2 244.0
N9 C1' O4' C4' 256.2 231.0
C8 N9 C1' C4 180.0 180.0
C1' N9 C8 N7 180.4 180.0
C1' N9 C8 H8 0.2 360.0
C1' N9 C4 C5 179.4 180.0
C1' N9 C4 N3 359.8 360.0
H1' C1' C2' C3' 252.1 222.7
H1' C1' C2' H2' 135.3 100.5
C2' C1' H1' O4' 114.1 118.8
C2' C1' H1' N9 222.1 235.7
O4' C1' H1' N9 107.9 116.8
H1' C1' O4' C4' 137.4 116.9
H1' C1' N9 C8 217.1 150.0
H1' C1' N9 C4 37.1 330.0
C2' C3' C4' O4' 44.6 323.0
C4' O4' C1' N9 256.2 231.0
C4' O4' C1' H1' 137.4 116.9
C5' C4' O4' C3' 125.4 122.5
C5' C4' O4' H4' 242.0 241.5
O4' C4' C5' O5' 241.7 62.1
O4' C4' C5' H5' 120.7 302.6
O4' C4' C5' H5'' 4.2 181.7
C3' C4' O4' H4' 116.6 119.0
O4' C4' C3' O3' 284.0 201.0
O4' C4' C3' H3' 160.6 79.3
C2' C3' C4' C5' 278.7 202.9
O4' C4' C5' C3' 244.0 242.6
O4' C4' C5' H4' 120.1 118.3
C3' C4' C5' H4' 236.1 235.7
C5' C4' C3' O3' 158.2 80.9
C5' C4' C3' H3' 34.8 319.3
O5' C5' C4' H5' 121.0 119.5
O5' C5' C4' H5'' 237.5 240.4
C4' C5' O5' P 178.7 180.0
H5' C5' C4' H5'' 116.5 120.9
C4' C3' C2' H2' 85.6 156.0
C2' C3' C4' O3' 120.5 121.9
C2' C3' C4' H3' 244.0 243.6
O4' C4' C3' C5' 125.8 120.1
O4' C4' C3' H4' 245.9 243.0
C5' C4' C3' H4' 120.1 122.9
C3' C4' C5' O5' 357.7 179.5
C3' C4' C5' H5' 236.7 60.1
C3' C4' C5' H5'' 120.2 299.1
O3' C3' C4' H3' 123.4 121.7
C4' C3' O3' CA' 273.5 175.2
O4' C4' H4' C5' 234.5 240.7
O4' C4' H4' C3' 107.8 115.1
C5' C4' H4' C3' 233.3 234.4
H4' C4' C5' O5' 121.6 303.8
H4' C4' C5' H5' 0.6 184.3
H4' C4' C5' H5'' 244.1 63.4
H4' C4' C3' O3' 38.1 318.0
H4' C4' C3' H3' 274.7 196.3
O5' C5' C4' C3' 357.7 179.5
O5' C5' C4' H4' 121.6 303.8
C4' C5' O5' H5' 239.3 239.9
C4' C5' O5' H5'' 122.7 120.2
H5' C5' O5' H5'' 243.4 240.3
C5' O5' P OP1 49.8 180.0
C5' O5' P OP3   53.2
C5' O5' P OP2 180.0 305.8
H5' C5' C4' C3' 236.7 60.1
H5' C5' C4' H4' 0.6 184.3
C4' C5' H5' O5' 123.4 119.2
C4' C5' H5' H5'' 241.6 238.7
O5' C5' H5' H5'' 118.2 119.5
H5' C5' O5' P 299.4 300.1
H5'' C5' C4' C3' 120.2 299.1
H5'' C5' C4' H4' 244.1 63.4
C4' C5' H5'' O5' 235.5 240.7
C4' C5' H5'' H5' 117.5 121.3
O5' C5' H5'' H5' 242.1 240.5
H5'' C5' O5' P 56.0 59.9
P O5' C5' H5' 299.4 300.1
P O5' C5' H5'' 56.0 59.9
OP1 P O5' OP3   126.9
OP1 P O5' OP2 229.8 234.2
OP3 P O5' OP2   107.4
O5' P OP3 HOP3   175.4
O5' P OP2 HOP2 180.0 186.2
O5' P OP1 OP3   239.3
O5' P OP1 OP2 123.3 119.3
OP3 P OP1 OP2   240.0
OP1 P OP3 HOP3   48.7
OP1 P OP2 HOP2 303.6 312.0
O5' P OP3 OP1   126.6
O5' P OP3 OP2   252.9
OP1 P OP3 OP2   126.2
OP3 P OP2 HOP2   78.5
O5' P OP2 OP1 236.3 234.2
O5' P OP2 OP3   107.7
OP1 P OP2 OP3   233.5
OP2 P OP3 HOP3   282.5
HOP3 OP3 P OP2   282.5
O3' C3' C2' H2' 202.1 276.9
C2' C3' O3' C4' 246.9 244.8
C2' C3' O3' H3' 122.2 122.4
O3' C3' C4' H4' 38.1 318.0
C4' C3' O3' H3' 235.3 237.6
C3' O3' CA' CB' 172.1 179.0
C3' O3' CA' HA'1 52.6 300.0
C3' O3' CA' HA'2 292.7 58.8
H3' C3' C2' H2' 326.0 39.0
C2' C3' H3' C4' 112.7 111.7
C2' C3' H3' O3' 234.5 235.3
H3' C3' C4' H4' 274.7 196.3
C4' C3' H3' O3' 121.8 123.5
H3' C3' O3' CA' 38.2 297.6
CA' O3' C3' H3' 38.2 297.6
CB' CA' O3' HA'1 119.5 239.0
CB' CA' O3' HA'2 239.4 120.2
O3' CA' CB' OC' 67.1 299.2
O3' CA' CB' HB'1 305.6 180.0
O3' CA' CB' HB'2 187.1 58.0
HA'1 CA' O3' HA'2 119.9 241.2
O3' CA' CB' HA'1 239.4 119.2
O3' CA' CB' HA'2 120.8 241.2
HA'1 CA' CB' HA'2 241.4 122.0
OC' CB' CA' HB'1 121.5 119.1
OC' CB' CA' HB'2 240.0 241.1
CA' CB' OC' CD' 180.3 179.0
HB'1 CB' CA' HB'2 118.5 122.0
O3' CA' HA'1 CB' 120.4 240.3
O3' CA' HA'1 HA'2 239.5 117.8
CB' CA' HA'1 HA'2 119.1 237.5
HA'1 CA' CB' OC' 187.7 180.0
HA'1 CA' CB' HB'1 66.2 60.8
HA'1 CA' CB' HB'2 307.7 298.9
O3' CA' HA'2 CB' 239.2 119.3
O3' CA' HA'2 HA'1 120.8 242.2
CB' CA' HA'2 HA'1 241.6 122.8
HA'2 CA' CB' OC' 306.3 58.0
HA'2 CA' CB' HB'1 184.8 298.8
HA'2 CA' CB' HB'2 66.3 176.9
OC' CB' CA' HA'1 187.7 180.0
OC' CB' CA' HA'2 306.3 58.0
CA' CB' OC' HB'1 239.3 239.0
CA' CB' OC' HB'2 119.6 120.2
HB'1 CB' OC' HB'2 240.3 241.2
CB' OC' CD' HD'1 297.9 278.7
CB' OC' CD' HD'2 178.3 157.9
CB' OC' CD' HD'3 58.8 38.3
HB'1 CB' CA' HA'1 66.2 60.8
HB'1 CB' CA' HA'2 184.8 298.8
CA' CB' HB'1 OC' 121.9 119.7
CA' CB' HB'1 HB'2 241.7 237.5
OC' CB' HB'1 HB'2 119.8 117.9
HB'1 CB' OC' CD' 301.0 300.0
HB'2 CB' CA' HA'1 307.7 298.9
HB'2 CB' CA' HA'2 66.3 176.9
CA' CB' HB'2 OC' 238.9 240.7
CA' CB' HB'2 HB'1 118.4 122.9
OC' CB' HB'2 HB'1 239.5 242.2
HB'2 CB' OC' CD' 60.7 58.8
CD' OC' CB' HB'1 301.0 300.0
CD' OC' CB' HB'2 60.7 58.8
HD'1 CD' OC' HD'2 119.6 120.8
HD'1 CD' OC' HD'3 239.2 240.4
HD'2 CD' OC' HD'3 119.6 119.6
OC' CD' HD'1 HD'2 240.3 239.5
OC' CD' HD'1 HD'3 121.1 119.3
HD'2 CD' HD'1 HD'3 240.8 239.8
OC' CD' HD'2 HD'1 120.2 120.5
OC' CD' HD'2 HD'3 239.8 240.7
HD'1 CD' HD'2 HD'3 119.5 120.1
OC' CD' HD'3 HD'1 238.9 240.3
OC' CD' HD'3 HD'2 119.7 119.7
HD'1 CD' HD'3 HD'2 240.8 239.4
C8 N9 C1' H1' 217.1 150.0
C1' N9 C8 C4 180.0 180.0
C8 N9 C4 C5 359.4 360.0
C8 N9 C4 N3 179.8 180.0
N7 C8 N9 H8 180.2 180.0
N9 C8 N7 C5 360.0 0.0
C4 N9 C1' H1' 37.1 330.0
C1' N9 C4 C8 180.0 180.0
C4 N9 C8 N7 0.4 0.0
C4 N9 C8 H8 180.2 180.0
N7 C5 C4 N9 0.6 0.0
N9 C4 C5 C6 184.9 180.0
C5 C4 N9 N3 179.6 180.0
N9 C4 N3 C2 174.2 180.0
N7 C8 N9 C4 0.4 0.0
N9 C8 N7 H8 179.8 180.0
C8 N7 C5 C4 359.6 360.0
C8 N7 C5 C6 174.2 180.0
H8 C8 N9 C4 180.2 180.0
N9 C8 H8 N7 180.2 180.0
H8 C8 N7 C5 180.2 180.0
N9 C4 C5 N7 0.6 0.0
C5 N7 C8 H8 180.2 180.0
C4 C5 N7 C6 185.4 180.0
N7 C5 C4 N3 180.2 180.0
N7 C5 C6 N1 184.8 179.9
N7 C5 C6 N6 5.1 359.9
N9 C4 C5 N3 180.4 180.0
N7 C5 C4 C6 175.7 180.0
C4 C5 C6 N1 359.2 360.0
C4 C5 C6 N6 179.5 180.0
C5 C4 N3 C2 354.6 360.0
N7 C5 C6 C4 185.6 180.0
C6 C5 C4 N3 4.6 0.0
C2 N1 C6 C5 358.6 0.0
N1 C6 C5 N6 179.7 180.0
C5 C6 N6 H61 179.5 357.9
C5 C6 N6 H62 359.6 184.2
N9 C4 N3 C5 179.5 180.0
N3 C4 C5 C6 4.6 0.0
C4 N3 C2 N1 2.8 0.0
C4 N3 C2 H2 182.8 180.1
N1 C2 N3 H2 180.0 180.0
N3 C2 N1 C6 0.3 360.0
C5 C6 N1 C2 358.6 0.0
N3 C2 N1 H2 180.0 180.0
C2 N1 C6 N6 178.4 180.0
N3 C2 H2 N1 180.0 180.0
H2 C2 N1 C6 180.3 179.9
C5 C6 N1 N6 180.3 180.0
C6 N1 C2 H2 180.3 179.9
N1 C6 N6 H61 359.8 177.9
N1 C6 N6 H62 179.9 4.2
C5 C6 N6 N1 179.7 180.0
H61 N6 C6 H62 179.9 173.8
C6 N6 H61 H62 180.1 186.3
C6 N6 H62 H61 179.9 173.7