PDB Chemical Component A28
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A28
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C1 |
1.405 |
1.402 |
| C1 |
C4 |
1.409 |
1.387 |
| C1 |
C10 |
1.407 |
1.483 |
| C3 |
C2 |
1.400 |
1.377 |
| F16 |
C2 |
1.346 |
1.351 |
| F17 |
C3 |
1.346 |
1.351 |
| C3 |
C9 |
1.394 |
1.396 |
| C8 |
C4 |
1.407 |
1.396 |
| C4 |
H4 |
1.080 |
1.080 |
| N5 |
N6 |
1.236 |
1.399 |
| N5 |
C9 |
1.338 |
1.371 |
| N6 |
C7 |
1.332 |
1.306 |
| C7 |
C8 |
1.394 |
1.465 |
| C7 |
N18 |
1.342 |
1.399 |
| C9 |
C8 |
1.393 |
1.407 |
| C10 |
C11 |
1.403 |
1.393 |
| C10 |
C15 |
1.397 |
1.393 |
| C11 |
C12 |
1.399 |
1.380 |
| C11 |
H11 |
1.080 |
1.080 |
| C12 |
C13 |
1.396 |
1.383 |
| C12 |
H12 |
1.079 |
1.080 |
| C14 |
C13 |
1.395 |
1.384 |
| C13 |
H13 |
1.080 |
1.080 |
| C15 |
C14 |
1.397 |
1.380 |
| C14 |
H14 |
1.080 |
1.080 |
| C15 |
H15 |
1.080 |
1.080 |
| N18 |
C19 |
1.345 |
1.347 |
| N18 |
HN18 |
1.000 |
0.970 |
| C19 |
C20 |
1.536 |
1.507 |
| C19 |
O21 |
1.228 |
1.213 |
| C20 |
C22 |
1.528 |
1.531 |
| C20 |
H20 |
1.101 |
1.090 |
| C20 |
H20A |
1.100 |
1.089 |
| C22 |
C23 |
1.528 |
1.529 |
| C22 |
H22 |
1.100 |
1.090 |
| C22 |
H22A |
1.100 |
1.091 |
| C23 |
H23 |
1.100 |
1.091 |
| C23 |
H23A |
1.101 |
1.090 |
| C23 |
H23B |
1.100 |
1.090 |
| N5 |
HN5 |
1.000 |
0.970 |
Bond Angles for A28
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
C4 |
118.6 |
120.2 |
| C2 |
C1 |
C10 |
119.9 |
119.9 |
| C4 |
C1 |
C10 |
121.2 |
119.9 |
| C1 |
C4 |
H4 |
119.8 |
120.1 |
| C1 |
C10 |
C11 |
122.2 |
120.2 |
| C1 |
C10 |
C15 |
119.3 |
120.1 |
| C3 |
C9 |
N5 |
132.3 |
133.5 |
| C3 |
C9 |
C8 |
119.8 |
119.7 |
| C8 |
C4 |
H4 |
119.8 |
120.2 |
| N6 |
N5 |
C9 |
110.8 |
109.2 |
| N5 |
N6 |
C7 |
110.4 |
110.0 |
| N6 |
N5 |
HN5 |
124.6 |
125.4 |
| N5 |
C9 |
C8 |
107.7 |
106.8 |
| C9 |
N5 |
HN5 |
124.6 |
125.4 |
| N6 |
C7 |
C8 |
108.2 |
107.7 |
| N6 |
C7 |
N18 |
121.9 |
126.2 |
| C8 |
C7 |
N18 |
129.4 |
126.2 |
| C7 |
N18 |
C19 |
126.9 |
120.0 |
| C7 |
N18 |
HN18 |
116.6 |
120.0 |
| C11 |
C10 |
C15 |
118.5 |
119.7 |
| C10 |
C11 |
C12 |
120.6 |
119.9 |
| C10 |
C11 |
H11 |
119.7 |
120.1 |
| C10 |
C15 |
C14 |
121.2 |
119.9 |
| C10 |
C15 |
H15 |
119.4 |
120.0 |
| C12 |
C11 |
H11 |
119.7 |
120.0 |
| C11 |
C12 |
C13 |
120.3 |
120.1 |
| C11 |
C12 |
H12 |
119.8 |
119.9 |
| C13 |
C12 |
H12 |
119.8 |
120.0 |
| C12 |
C13 |
H13 |
120.3 |
119.9 |
| C14 |
C13 |
H13 |
120.2 |
119.9 |
| C15 |
C14 |
H14 |
120.0 |
120.0 |
| C19 |
N18 |
HN18 |
116.6 |
120.0 |
| N18 |
C19 |
C20 |
114.6 |
120.0 |
| N18 |
C19 |
O21 |
125.9 |
120.0 |
| C20 |
C19 |
O21 |
119.5 |
120.0 |
| C19 |
C20 |
C22 |
111.0 |
109.5 |
| C19 |
C20 |
H20 |
109.0 |
109.5 |
| C19 |
C20 |
H20A |
109.0 |
109.5 |
| C22 |
C20 |
H20 |
109.0 |
109.5 |
| C22 |
C20 |
H20A |
109.0 |
109.4 |
| C20 |
C22 |
C23 |
110.5 |
109.5 |
| C20 |
C22 |
H22 |
109.1 |
109.5 |
| C20 |
C22 |
H22A |
109.1 |
109.4 |
| H20 |
C20 |
H20A |
109.9 |
109.5 |
| C23 |
C22 |
H22 |
109.1 |
109.5 |
| C23 |
C22 |
H22A |
109.1 |
109.5 |
| C22 |
C23 |
H23 |
109.5 |
109.5 |
| C22 |
C23 |
H23A |
109.5 |
109.5 |
| C22 |
C23 |
H23B |
109.5 |
109.5 |
| H22 |
C22 |
H22A |
109.8 |
109.5 |
| H23 |
C23 |
H23A |
109.5 |
109.5 |
| H23 |
C23 |
H23B |
109.5 |
109.4 |
| H23A |
C23 |
H23B |
109.4 |
109.5 |
Torsion Angles for A28
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C1 |
C2 |
C10 |
187.0 |
180.3 |
| C2 |
C1 |
C4 |
H4 |
176.1 |
179.8 |
| C2 |
C1 |
C10 |
C11 |
50.9 |
310.3 |
| C2 |
C1 |
C10 |
C15 |
234.5 |
130.0 |
| C2 |
C1 |
C4 |
C10 |
172.9 |
179.7 |
| C4 |
C1 |
C10 |
C11 |
223.8 |
130.0 |
| C4 |
C1 |
C10 |
C15 |
47.4 |
309.7 |
| C8 |
C4 |
C1 |
H4 |
180.0 |
179.9 |
| C2 |
C1 |
C10 |
C4 |
187.1 |
180.3 |
| C10 |
C1 |
C4 |
H4 |
3.2 |
0.1 |
| C11 |
C10 |
C1 |
C15 |
176.4 |
180.2 |
| C1 |
C10 |
C11 |
C12 |
181.3 |
180.0 |
| C1 |
C10 |
C11 |
H11 |
1.3 |
360.0 |
| C1 |
C10 |
C15 |
C14 |
179.3 |
179.7 |
| C1 |
C10 |
C15 |
H15 |
359.3 |
360.0 |
| C3 |
C2 |
C1 |
C4 |
1.8 |
0.1 |
| C3 |
C2 |
C1 |
C10 |
174.8 |
179.7 |
| N6 |
N5 |
C9 |
C3 |
178.8 |
180.0 |
| N5 |
C9 |
C3 |
C8 |
184.8 |
179.7 |
| C3 |
C9 |
N5 |
HN5 |
358.8 |
0.3 |
| C8 |
C4 |
C1 |
C10 |
183.2 |
180.0 |
| C1 |
C4 |
C8 |
H4 |
180.0 |
180.1 |
| C3 |
C9 |
C8 |
C4 |
358.3 |
359.5 |
| H4 |
C4 |
C1 |
C10 |
3.2 |
0.1 |
| C3 |
C9 |
N5 |
N6 |
178.8 |
180.0 |
| N6 |
N5 |
C9 |
C8 |
3.2 |
359.8 |
| C9 |
N5 |
N6 |
HN5 |
180.0 |
180.3 |
| N5 |
N6 |
C7 |
C8 |
0.2 |
359.8 |
| N5 |
N6 |
C7 |
N18 |
187.3 |
180.0 |
| C3 |
C9 |
N5 |
C8 |
175.6 |
180.3 |
| C9 |
N5 |
N6 |
C7 |
357.9 |
0.3 |
| N6 |
N5 |
C9 |
HN5 |
180.0 |
179.7 |
| C7 |
N6 |
N5 |
C9 |
357.9 |
0.3 |
| C7 |
N6 |
N5 |
HN5 |
177.9 |
180.0 |
| C8 |
C7 |
N6 |
N18 |
172.9 |
179.8 |
| N6 |
C7 |
N18 |
C19 |
207.1 |
360.0 |
| N6 |
C7 |
N18 |
HN18 |
27.1 |
180.0 |
| C3 |
C9 |
C8 |
C7 |
180.9 |
179.9 |
| C7 |
C8 |
C4 |
H4 |
0.1 |
359.9 |
| N5 |
C9 |
C8 |
C7 |
357.2 |
0.1 |
| N6 |
C7 |
C8 |
N18 |
187.8 |
180.2 |
| C8 |
C7 |
N18 |
C19 |
35.8 |
180.2 |
| C8 |
C7 |
N18 |
HN18 |
215.9 |
0.3 |
| N6 |
C7 |
N18 |
C8 |
171.3 |
179.7 |
| C19 |
N18 |
C7 |
HN18 |
180.0 |
179.9 |
| C7 |
N18 |
C19 |
C20 |
179.6 |
180.0 |
| C7 |
N18 |
C19 |
O21 |
0.2 |
0.0 |
| C3 |
C9 |
C8 |
N5 |
183.8 |
179.8 |
| C9 |
C8 |
C4 |
H4 |
183.9 |
180.5 |
| C8 |
C9 |
N5 |
HN5 |
183.2 |
180.0 |
| C9 |
C8 |
C7 |
N18 |
173.9 |
179.9 |
| C1 |
C10 |
C11 |
C15 |
183.6 |
179.8 |
| C11 |
C10 |
C15 |
C14 |
2.8 |
359.5 |
| C11 |
C10 |
C15 |
H15 |
182.8 |
179.7 |
| C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
C13 |
0.9 |
0.0 |
| C10 |
C11 |
C12 |
H12 |
180.9 |
180.0 |
| C1 |
C10 |
C15 |
C11 |
176.5 |
180.2 |
| C15 |
C10 |
C11 |
C12 |
357.7 |
0.3 |
| C15 |
C10 |
C11 |
H11 |
177.6 |
180.2 |
| C10 |
C15 |
C14 |
H14 |
178.1 |
180.2 |
| C12 |
C11 |
C10 |
C15 |
357.7 |
0.3 |
| C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
H13 |
180.1 |
180.0 |
| H11 |
C11 |
C10 |
C15 |
177.6 |
180.2 |
| C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C11 |
C12 |
C13 |
180.9 |
180.1 |
| H11 |
C11 |
C12 |
H12 |
0.9 |
0.0 |
| C13 |
C12 |
C11 |
H11 |
180.9 |
180.1 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| C14 |
C13 |
C12 |
H13 |
180.0 |
179.9 |
| H12 |
C12 |
C11 |
H11 |
0.9 |
0.0 |
| C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
| H12 |
C12 |
C13 |
H13 |
0.2 |
0.1 |
| C10 |
C15 |
C14 |
C13 |
358.1 |
0.5 |
| C14 |
C13 |
C12 |
H12 |
180.1 |
180.0 |
| C12 |
C13 |
C14 |
H13 |
180.0 |
180.1 |
| H13 |
C13 |
C12 |
H12 |
0.2 |
0.1 |
| C10 |
C15 |
C14 |
H15 |
180.0 |
180.2 |
| C15 |
C14 |
C13 |
H13 |
180.3 |
179.7 |
| H14 |
C14 |
C13 |
H13 |
0.3 |
360.0 |
| C10 |
C15 |
H15 |
C14 |
180.0 |
179.8 |
| H15 |
C15 |
C14 |
H14 |
358.1 |
0.0 |
| C7 |
N18 |
C19 |
HN18 |
180.0 |
180.1 |
| C20 |
C19 |
N18 |
O21 |
179.4 |
179.9 |
| N18 |
C19 |
C20 |
C22 |
87.9 |
180.0 |
| N18 |
C19 |
C20 |
H20 |
208.0 |
300.0 |
| N18 |
C19 |
C20 |
H20A |
327.9 |
60.1 |
| C7 |
N18 |
HN18 |
C19 |
180.0 |
179.9 |
| HN18 |
N18 |
C19 |
C20 |
359.6 |
359.9 |
| HN18 |
N18 |
C19 |
O21 |
180.2 |
180.0 |
| C20 |
C19 |
N18 |
HN18 |
359.6 |
359.9 |
| N18 |
C19 |
C20 |
O21 |
180.6 |
180.1 |
| C22 |
C20 |
C19 |
H20 |
240.0 |
240.0 |
| C22 |
C20 |
C19 |
H20A |
120.0 |
119.9 |
| C19 |
C20 |
C22 |
C23 |
156.0 |
180.0 |
| C19 |
C20 |
C22 |
H22 |
276.0 |
300.0 |
| C19 |
C20 |
C22 |
H22A |
36.0 |
60.0 |
| H20 |
C20 |
C19 |
H20A |
240.0 |
240.0 |
| O21 |
C19 |
N18 |
HN18 |
180.2 |
180.0 |
| N18 |
C19 |
O21 |
C20 |
179.4 |
179.9 |
| O21 |
C19 |
C20 |
C22 |
267.4 |
360.0 |
| O21 |
C19 |
C20 |
H20 |
27.4 |
120.0 |
| O21 |
C19 |
C20 |
H20A |
147.4 |
240.0 |
| C22 |
C20 |
C19 |
O21 |
267.4 |
360.0 |
| C19 |
C20 |
C22 |
H20 |
120.0 |
120.0 |
| C19 |
C20 |
C22 |
H20A |
240.0 |
240.0 |
| H20 |
C20 |
C22 |
H20A |
120.0 |
120.0 |
| C23 |
C22 |
C20 |
H22 |
240.0 |
240.0 |
| C23 |
C22 |
C20 |
H22A |
120.0 |
120.0 |
| C20 |
C22 |
C23 |
H23 |
180.0 |
300.0 |
| C20 |
C22 |
C23 |
H23A |
300.0 |
60.0 |
| C20 |
C22 |
C23 |
H23B |
60.0 |
180.1 |
| H22 |
C22 |
C20 |
H22A |
240.0 |
240.0 |
| H20 |
C20 |
C19 |
O21 |
27.4 |
120.0 |
| C19 |
C20 |
H20 |
C22 |
238.8 |
240.0 |
| C19 |
C20 |
H20 |
H20A |
119.4 |
120.0 |
| C22 |
C20 |
H20 |
H20A |
240.6 |
240.0 |
| H20 |
C20 |
C22 |
C23 |
36.0 |
60.0 |
| H20 |
C20 |
C22 |
H22 |
156.0 |
180.0 |
| H20 |
C20 |
C22 |
H22A |
276.0 |
300.0 |
| H20A |
C20 |
C19 |
O21 |
147.4 |
240.0 |
| C19 |
C20 |
H20A |
C22 |
121.2 |
120.0 |
| C19 |
C20 |
H20A |
H20 |
240.6 |
240.0 |
| C22 |
C20 |
H20A |
H20 |
119.4 |
120.0 |
| H20A |
C20 |
C22 |
C23 |
276.0 |
300.0 |
| H20A |
C20 |
C22 |
H22 |
36.0 |
60.0 |
| H20A |
C20 |
C22 |
H22A |
156.0 |
180.0 |
| C23 |
C22 |
C20 |
H20 |
36.0 |
60.0 |
| C23 |
C22 |
C20 |
H20A |
276.0 |
300.0 |
| C20 |
C22 |
C23 |
H22 |
120.0 |
120.0 |
| C20 |
C22 |
C23 |
H22A |
240.0 |
240.1 |
| H22 |
C22 |
C23 |
H22A |
120.0 |
120.0 |
| H23 |
C23 |
C22 |
H23A |
240.0 |
240.0 |
| H23 |
C23 |
C22 |
H23B |
120.0 |
119.9 |
| H23A |
C23 |
C22 |
H23B |
240.0 |
239.9 |
| H22 |
C22 |
C20 |
H20 |
156.0 |
180.0 |
| H22 |
C22 |
C20 |
H20A |
36.0 |
60.0 |
| C20 |
C22 |
H22 |
C23 |
239.1 |
240.0 |
| C20 |
C22 |
H22 |
H22A |
119.6 |
119.9 |
| C23 |
C22 |
H22 |
H22A |
240.4 |
240.0 |
| H22 |
C22 |
C23 |
H23 |
60.0 |
180.0 |
| H22 |
C22 |
C23 |
H23A |
180.0 |
300.0 |
| H22 |
C22 |
C23 |
H23B |
300.0 |
60.0 |
| H22A |
C22 |
C20 |
H20 |
276.0 |
300.0 |
| H22A |
C22 |
C20 |
H20A |
156.0 |
180.0 |
| C20 |
C22 |
H22A |
C23 |
120.9 |
120.0 |
| C20 |
C22 |
H22A |
H22 |
240.4 |
240.0 |
| C23 |
C22 |
H22A |
H22 |
119.5 |
120.0 |
| H22A |
C22 |
C23 |
H23 |
300.0 |
59.9 |
| H22A |
C22 |
C23 |
H23A |
60.0 |
179.9 |
| H22A |
C22 |
C23 |
H23B |
180.0 |
300.0 |
| H23 |
C23 |
C22 |
H22 |
60.0 |
180.0 |
| H23 |
C23 |
C22 |
H22A |
300.0 |
59.9 |
| C22 |
C23 |
H23 |
H23A |
120.0 |
120.0 |
| C22 |
C23 |
H23 |
H23B |
240.0 |
240.0 |
| H23A |
C23 |
H23 |
H23B |
120.0 |
120.0 |
| H23A |
C23 |
C22 |
H22 |
180.0 |
300.0 |
| H23A |
C23 |
C22 |
H22A |
60.0 |
179.9 |
| C22 |
C23 |
H23A |
H23 |
240.0 |
240.0 |
| C22 |
C23 |
H23A |
H23B |
120.0 |
120.0 |
| H23 |
C23 |
H23A |
H23B |
240.0 |
240.0 |
| H23B |
C23 |
C22 |
H22 |
300.0 |
60.0 |
| H23B |
C23 |
C22 |
H22A |
180.0 |
300.0 |
| C22 |
C23 |
H23B |
H23 |
120.0 |
120.0 |
| C22 |
C23 |
H23B |
H23A |
240.0 |
240.0 |
| H23 |
C23 |
H23B |
H23A |
120.0 |
120.0 |
| N6 |
N5 |
HN5 |
C9 |
180.0 |
180.3 |
| HN5 |
N5 |
N6 |
C7 |
177.9 |
180.0 |
| HN5 |
N5 |
C9 |
C8 |
183.2 |
180.0 |