PDB Chemical Component A23

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A23

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PC O1C 1.491 1.478
PC O2C 1.485 1.610
PC O3' 1.593 1.631
PC O2' 1.591 1.631
O2C HOC2 0.949 0.967
P OP1 1.490 1.480
P OP2 1.488 1.611
P OP3 1.613 1.610
P O5' 1.591 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967
O5' C5' 1.419 1.429
C5' C4' 1.519 1.529
C5' H5' 1.115 1.089
C5' H5'' 1.114 1.090
C4' O4' 1.457 1.444
C4' C3' 1.518 1.544
C4' H4' 1.114 1.089
O4' C1' 1.419 1.444
C3' O3' 1.419 1.439
C3' C2' 1.544 1.544
C3' H3' 1.114 1.090
C2' O2' 1.417 1.449
C2' C1' 1.529 1.543
C2' H2' 1.115 1.090
C1' N9 1.467 1.465
C1' H1' 1.116 1.090
N9 C8 1.375 1.364
N9 C4 1.379 1.372
C8 N7 1.311 1.302
C8 H8 1.102 1.080
N7 C5 1.388 1.355
C5 C6 1.413 1.406
C5 C4 1.386 1.405
C6 N6 1.345 1.384
C6 N1 1.354 1.329
N6 HN61 1.020 0.970
N6 HN62 1.020 0.969
N1 C2 1.342 1.320
C2 N3 1.338 1.317
C2 H2 1.104 1.079
N3 C4 1.346 1.328

Bond Angles for A23

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1C PC O2C 120.7 112.3
O1C PC O3' 111.7 110.9
O1C PC O2' 108.2 111.0
O2C PC O3' 108.5 110.8
O2C PC O2' 111.2 110.8
PC O2C HOC2 120.7 106.8
O3' PC O2' 93.0 100.4
PC O3' C3' 116.1 103.3
PC O2' C2' 117.0 103.4
OP1 P OP2 119.1 109.5
OP1 P OP3 108.0 109.5
OP1 P O5' 108.8 109.5
OP2 P OP3 108.5 109.5
OP2 P O5' 107.7 109.4
P OP2 HOP2 119.1 106.7
OP3 P O5' 103.6 109.5
P OP3 HOP3 108.1 106.8
P O5' C5' 120.6 106.8
O5' C5' C4' 111.5 109.5
O5' C5' H5' 111.5 109.4
O5' C5' H5'' 111.5 109.4
C4' C5' H5' 111.4 109.5
C4' C5' H5'' 111.5 109.5
C5' C4' O4' 110.9 110.4
C5' C4' C3' 111.7 110.5
C5' C4' H4' 106.0 110.3
H5' C5' H5'' 99.0 109.5
O4' C4' C3' 106.1 104.7
O4' C4' H4' 111.5 110.4
C4' O4' C1' 110.1 105.3
C3' C4' H4' 110.8 110.4
C4' C3' O3' 115.9 108.8
C4' C3' C2' 103.9 104.2
C4' C3' H3' 107.6 111.2
O4' C1' C2' 108.3 104.9
O4' C1' N9 108.6 110.3
O4' C1' H1' 112.4 110.3
O3' C3' C2' 104.5 110.0
O3' C3' H3' 107.0 111.1
C2' C3' H3' 118.5 111.3
C3' C2' O2' 104.3 109.0
C3' C2' C1' 101.8 104.0
C3' C2' H2' 117.0 112.4
O2' C2' C1' 108.6 109.0
O2' C2' H2' 111.0 111.1
C1' C2' H2' 113.2 111.1
C2' C1' N9 113.7 110.4
C2' C1' H1' 107.2 110.4
N9 C1' H1' 106.8 110.3
C1' N9 C8 127.8 126.3
C1' N9 C4 126.6 126.3
C8 N9 C4 105.6 107.4
N9 C8 N7 113.9 110.0
N9 C8 H8 125.2 125.0
N9 C4 C5 105.9 106.0
N9 C4 N3 127.4 134.9
N7 C8 H8 120.9 125.0
C8 N7 C5 104.0 109.4
N7 C5 C6 132.2 134.6
N7 C5 C4 110.6 107.2
C6 C5 C4 117.2 118.2
C5 C6 N6 123.7 120.8
C5 C6 N1 117.6 118.4
C5 C4 N3 126.7 119.1
N6 C6 N1 118.7 120.8
C6 N6 HN61 123.6 119.9
C6 N6 HN62 107.2 120.0
C6 N1 C2 118.4 121.2
HN61 N6 HN62 107.2 120.1
N1 C2 N3 129.4 122.5
N1 C2 H2 115.4 118.7
N3 C2 H2 115.2 118.8
C2 N3 C4 110.6 120.6

Torsion Angles for A23

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2C PC O1C O3' 129.3 124.6
O2C PC O1C O2' 230.4 235.3
O1C PC O2C HOC2 179.9 55.3
O3' PC O1C O2' 101.0 110.7
O1C PC O3' C3' 237.3 207.9
O1C PC O2' C2' 109.9 152.4
O1C PC O2C O3' 229.3 235.3
O1C PC O2C O2' 128.3 124.7
O3' PC O2C O2' 259.1 249.4
O2C PC O3' C3' 101.9 82.5
O2C PC O2' C2' 244.6 277.9
O1C PC O3' O2C 135.4 125.5
O1C PC O3' O2' 249.0 242.6
O2C PC O3' O2' 113.6 117.2
O3' PC O2C HOC2 310.7 180.0
O3' PC O2' C2' 355.8 35.0
C4' C3' O3' PC 135.4 136.0
PC O3' C3' C2' 21.8 22.5
PC O3' C3' H3' 255.4 258.8
O1C PC O2' O2C 225.3 234.5
O1C PC O2' O3' 114.0 117.4
O2C PC O2' O3' 248.8 242.8
O2' PC O2C HOC2 51.6 290.6
O2' PC O3' C3' 348.3 325.3
C3' C2' O2' PC 16.4 336.8
PC O2' C2' C1' 268.5 223.9
PC O2' C2' H2' 143.3 101.2
HOC2 O2C PC O3' 310.7 180.0
HOC2 O2C PC O2' 51.6 290.6
OP2 P OP1 OP3 235.8 120.0
OP2 P OP1 O5' 123.9 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 248.1 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 4.4 60.0
OP1 P OP2 OP3 124.0 240.0
OP1 P OP2 O5' 235.6 120.0
OP3 P OP2 O5' 111.6 240.0
OP2 P OP3 HOP3 310.4 60.0
OP2 P O5' C5' 234.0 180.0
OP1 P OP3 OP2 229.6 120.0
OP1 P OP3 O5' 115.3 240.0
OP2 P OP3 O5' 245.7 120.0
OP3 P OP2 HOP2 56.0 60.0
OP3 P O5' C5' 119.2 300.0
OP1 P O5' OP2 130.4 240.0
OP1 P O5' OP3 245.2 120.0
OP2 P O5' OP3 114.8 240.0
O5' P OP2 HOP2 304.4 180.0
O5' P OP3 HOP3 64.6 300.0
P O5' C5' C4' 196.4 180.0
P O5' C5' H5' 321.6 60.0
P O5' C5' H5'' 71.2 300.0
HOP2 OP2 P OP3 56.0 60.0
HOP2 OP2 P O5' 304.4 180.0
HOP3 OP3 P O5' 64.6 300.0
C4' C5' O5' H5' 234.8 120.0
C4' C5' O5' H5'' 125.2 240.0
O5' C5' C4' O4' 36.6 61.5
O5' C5' C4' C3' 154.7 176.9
O5' C5' C4' H4' 275.4 299.2
H5' C5' O5' H5'' 250.4 120.0
O5' C5' C4' H5' 125.2 240.0
O5' C5' C4' H5'' 234.8 120.0
H5' C5' C4' H5'' 109.5 239.9
O4' C4' C5' C3' 241.9 244.6
O4' C4' C5' H4' 121.2 122.3
C5' C4' O4' C1' 110.2 159.4
C3' C4' C5' H4' 239.3 237.7
C5' C4' C3' O3' 151.8 99.8
C5' C4' C3' C2' 265.8 217.1
C5' C4' C3' H3' 32.2 337.1
O5' C5' H5' C4' 234.8 120.0
O5' C5' H5' H5'' 117.4 240.1
C4' C5' H5' H5'' 242.6 120.0
H5' C5' C4' O4' 271.4 181.4
H5' C5' C4' C3' 29.5 296.8
H5' C5' C4' H4' 150.2 59.2
O5' C5' H5'' C4' 125.2 240.0
O5' C5' H5'' H5' 242.6 119.9
C4' C5' H5'' H5' 117.4 239.9
H5'' C5' C4' O4' 161.9 301.5
H5'' C5' C4' C3' 279.9 56.9
H5'' C5' C4' H4' 40.7 179.2
O4' C4' C5' H5' 271.4 181.4
O4' C4' C5' H5'' 161.9 301.5
C5' C4' O4' C3' 121.4 119.0
C5' C4' O4' H4' 242.1 237.7
C3' C4' O4' H4' 120.7 118.8
O4' C4' C3' O3' 272.7 218.7
O4' C4' C3' C2' 26.7 336.0
O4' C4' C3' H3' 153.1 96.0
C4' O4' C1' C2' 350.7 319.6
C4' O4' C1' N9 226.9 200.6
C4' O4' C1' H1' 108.9 78.5
PC O3' C3' C4' 135.4 136.0
C3' C4' C5' H5' 29.5 296.8
C3' C4' C5' H5'' 279.9 56.9
C5' C4' C3' O4' 239.1 241.1
C5' C4' C3' H4' 117.9 122.3
O4' C4' C3' H4' 238.8 241.2
C3' C4' O4' C1' 348.8 40.4
O3' C3' C4' C2' 246.0 242.7
O3' C3' C4' H3' 119.7 122.7
C2' C3' C4' H3' 233.6 240.0
C4' C3' C2' O2' 216.1 243.9
C4' C3' C2' C1' 329.0 0.1
C4' C3' C2' H2' 93.0 120.3
H4' C4' C5' H5' 150.2 59.2
H4' C4' C5' H5'' 40.7 179.2
C5' C4' H4' O4' 120.8 122.3
C5' C4' H4' C3' 238.7 237.6
O4' C4' H4' C3' 117.9 115.3
H4' C4' O4' C1' 228.1 281.7
H4' C4' C3' O3' 33.9 337.5
H4' C4' C3' C2' 147.9 94.7
H4' C4' C3' H3' 274.2 214.8
C1' O4' C4' C3' 348.8 40.4
C1' O4' C4' H4' 228.1 281.7
C3' C2' C1' O4' 25.3 23.8
O2' C2' C1' O4' 135.0 140.0
O4' C1' C2' H2' 258.8 262.7
C2' C1' O4' N9 123.9 119.0
C2' C1' O4' H1' 241.8 241.1
N9 C1' O4' H1' 117.9 122.1
O4' C1' N9 C8 41.9 27.1
O4' C1' N9 C4 221.9 207.0
C3' O3' PC O2' 348.3 325.3
O3' C3' C4' H4' 33.9 337.5
C4' C3' O3' C2' 113.6 113.5
C4' C3' O3' H3' 240.0 237.2
C2' C3' O3' H3' 126.4 123.7
O3' C3' C2' O2' 338.0 0.4
O3' C3' C2' C1' 90.9 116.6
O3' C3' C2' H2' 214.9 236.8
PC O2' C2' C3' 16.4 336.8
C2' C3' C4' H4' 147.9 94.7
C4' C3' C2' O3' 238.1 243.5
C4' C3' C2' H3' 119.2 119.9
O4' C1' C2' C3' 25.3 23.8
O3' C3' C2' H3' 241.1 236.4
O2' C2' C3' C1' 247.1 243.8
O2' C2' C3' H2' 123.1 123.6
C1' C2' C3' H2' 236.0 239.8
C3' C2' C1' N9 146.0 142.7
C3' C2' C1' H1' 263.8 265.0
H3' C3' C4' H4' 274.2 214.8
C4' C3' H3' O3' 125.2 121.4
C4' C3' H3' C2' 242.8 244.3
O3' C3' H3' C2' 117.6 123.0
H3' C3' C2' O2' 96.9 124.0
H3' C3' C2' C1' 209.9 240.2
H3' C3' C2' H2' 333.8 0.4
O4' C1' C2' O2' 135.0 140.0
O2' C2' C3' H3' 96.9 124.0
C3' C2' O2' C1' 107.9 112.9
C3' C2' O2' H2' 233.1 235.7
C1' C2' O2' H2' 125.1 122.7
O2' C2' C1' N9 255.7 258.9
O2' C2' C1' H1' 13.5 21.1
O4' C1' C2' N9 239.3 241.1
O4' C1' C2' H1' 121.5 118.9
C1' C2' C3' H3' 209.9 240.2
C3' C2' C1' O2' 250.3 243.9
C3' C2' C1' H2' 126.5 121.1
O2' C2' C1' H2' 236.2 237.2
N9 C1' C2' H1' 242.2 237.8
C2' C1' N9 C8 281.3 271.6
C2' C1' N9 C4 101.3 91.5
H2' C2' C3' H3' 333.8 0.4
C3' C2' H2' O2' 119.6 122.4
C3' C2' H2' C1' 242.1 243.9
O2' C2' H2' C1' 122.5 121.6
H2' C2' C1' N9 19.5 21.6
H2' C2' C1' H1' 137.3 143.9
O4' C1' N9 C2' 120.6 115.5
O4' C1' N9 H1' 238.6 237.8
N9 C1' C2' H2' 19.5 21.6
C2' C1' N9 H1' 118.0 122.3
C8 N9 C1' C4 180.0 180.1
C1' N9 C8 N7 180.2 179.9
C1' N9 C8 H8 0.2 359.9
C1' N9 C4 C5 180.0 180.3
C1' N9 C4 N3 0.1 0.2
O4' C1' H1' C2' 241.2 244.5
O4' C1' H1' N9 119.0 122.2
H1' C1' C2' H2' 137.3 143.9
C2' C1' H1' N9 237.8 237.7
H1' C1' N9 C8 163.3 149.3
H1' C1' N9 C4 343.3 329.1
C8 N9 C1' H1' 163.3 149.3
C1' N9 C8 C4 180.0 179.9
C8 N9 C4 C5 0.0 0.2
C8 N9 C4 N3 180.1 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.7 359.7
C4 N9 C1' H1' 343.3 329.1
C1' N9 C4 C8 180.0 180.1
C4 N9 C8 N7 0.2 0.1
C4 N9 C8 H8 180.2 180.0
N7 C5 C4 N9 359.8 359.7
C6 C5 C4 N9 179.7 180.4
C5 C4 N9 N3 179.9 180.1
C2 N3 C4 N9 179.8 179.9
N7 C8 N9 C4 0.2 0.1
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.5 179.5
C8 N7 C5 C4 0.3 0.4
H8 C8 N9 C4 180.2 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.7 179.8
N9 C4 C5 N7 359.8 359.7
C5 N7 C8 H8 179.7 179.8
C6 C5 N7 C4 180.2 179.1
N7 C5 C6 N6 1.1 0.7
N7 C5 C6 N1 180.6 180.4
N7 C5 C4 N3 179.7 179.8
N9 C4 C5 C6 179.7 180.4
N7 C5 C6 C4 179.8 181.0
C6 C5 C4 N3 359.6 0.5
N6 C6 C5 N1 180.5 180.3
C5 C6 N6 HN61 180.0 179.7
C5 C6 N6 HN62 54.8 359.5
C5 C6 N1 C2 359.4 0.3
N9 C4 C5 N3 180.1 179.9
N7 C5 C4 C6 180.2 179.3
C4 C5 C6 N6 181.3 179.8
C4 C5 C6 N1 0.8 359.5
C2 N3 C4 C5 359.8 359.8
N6 C6 C5 C4 181.3 179.8
C5 C6 N6 N1 179.5 179.7
N6 C6 N1 C2 178.9 180.0
HN61 N6 C6 HN62 125.2 180.3
N1 C6 C5 C4 0.8 359.5
C5 C6 N1 N6 180.5 180.3
N1 C6 N6 HN61 0.6 0.0
N1 C6 N6 HN62 235.3 179.7
C6 N1 C2 N3 359.9 360.0
C6 N1 C2 H2 179.9 180.0
HN61 N6 C6 N1 0.6 0.0
C6 N6 HN61 HN62 234.7 179.7
HN62 N6 C6 N1 235.3 179.7
C6 N6 HN62 HN61 134.6 180.3
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 0.4 360.0
N9 C4 N3 C2 179.8 179.9
C5 C4 N3 C2 359.8 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.4 180.0
N9 C4 N3 C5 179.9 180.2
C4 N3 C2 H2 180.4 180.0