PDB Chemical Component A06
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for A06
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C6 |
1.391 |
1.382 |
C1 |
C2 |
1.388 |
1.382 |
C1 |
C14 |
1.476 |
1.506 |
C6 |
C5 |
1.391 |
1.382 |
C5 |
C4 |
1.394 |
1.383 |
C4 |
C3 |
1.392 |
1.384 |
C4 |
CL2 |
1.798 |
1.736 |
C3 |
C2 |
1.386 |
1.382 |
C8 |
C9 |
1.387 |
1.388 |
C8 |
C13 |
1.477 |
1.405 |
C8 |
N9 |
1.337 |
1.382 |
C9 |
C10 |
1.392 |
1.378 |
C10 |
C11 |
1.393 |
1.389 |
C11 |
C12 |
1.390 |
1.376 |
C11 |
CL1 |
1.789 |
1.736 |
C12 |
C13 |
1.385 |
1.397 |
C13 |
N14 |
1.349 |
1.359 |
N14 |
C15 |
1.357 |
1.301 |
C15 |
C16 |
1.510 |
1.506 |
C15 |
N9 |
1.351 |
1.360 |
C14 |
C16 |
1.523 |
1.530 |
C14 |
C17 |
|
1.531 |
C17 |
C18 |
|
1.507 |
C18 |
O1 |
|
1.342 |
C18 |
O2 |
|
1.208 |
C14 |
H14 |
1.100 |
1.090 |
C6 |
H6 |
1.080 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
C5 |
H5 |
1.080 |
1.081 |
C3 |
H3 |
1.080 |
1.079 |
C9 |
H9 |
1.080 |
1.080 |
N9 |
HA |
1.000 |
0.970 |
C10 |
H10 |
1.080 |
1.080 |
C12 |
H12 |
1.080 |
1.080 |
C16 |
H161 |
1.100 |
1.090 |
C16 |
H162 |
1.100 |
1.090 |
C17 |
H171 |
|
1.090 |
C17 |
H172 |
|
1.090 |
O1 |
HO1 |
|
0.967 |
Bond Angles for A06
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
120.6 |
120.0 |
C6 |
C1 |
C14 |
120.7 |
120.0 |
C1 |
C6 |
C5 |
119.8 |
120.0 |
C1 |
C6 |
H6 |
120.1 |
120.0 |
C2 |
C1 |
C14 |
118.7 |
120.0 |
C1 |
C2 |
C3 |
119.7 |
120.1 |
C1 |
C2 |
H2 |
120.1 |
120.0 |
C1 |
C14 |
C16 |
107.2 |
109.5 |
C1 |
C14 |
C17 |
|
109.5 |
C1 |
C14 |
H14 |
113.9 |
109.5 |
C6 |
C5 |
C4 |
119.7 |
120.0 |
C5 |
C6 |
H6 |
120.1 |
120.0 |
C6 |
C5 |
H5 |
120.2 |
120.0 |
C5 |
C4 |
C3 |
120.2 |
120.0 |
C5 |
C4 |
CL2 |
120.5 |
120.0 |
C4 |
C5 |
H5 |
120.2 |
120.0 |
C3 |
C4 |
CL2 |
119.3 |
120.0 |
C4 |
C3 |
C2 |
120.1 |
119.9 |
C4 |
C3 |
H3 |
119.9 |
120.0 |
C3 |
C2 |
H2 |
120.2 |
120.0 |
C2 |
C3 |
H3 |
120.0 |
120.0 |
C9 |
C8 |
C13 |
119.5 |
120.0 |
C9 |
C8 |
N9 |
134.3 |
134.0 |
C8 |
C9 |
C10 |
119.1 |
119.8 |
C8 |
C9 |
H9 |
120.5 |
120.1 |
C13 |
C8 |
N9 |
106.1 |
106.0 |
C8 |
C13 |
C12 |
119.5 |
119.5 |
C8 |
C13 |
N14 |
106.2 |
106.9 |
C8 |
N9 |
C15 |
109.0 |
107.3 |
C8 |
N9 |
HA |
125.5 |
126.3 |
C9 |
C10 |
C11 |
121.2 |
120.5 |
C10 |
C9 |
H9 |
120.5 |
120.1 |
C9 |
C10 |
H10 |
119.4 |
119.7 |
C10 |
C11 |
C12 |
121.7 |
120.5 |
C10 |
C11 |
CL1 |
119.4 |
119.8 |
C11 |
C10 |
H10 |
119.4 |
119.8 |
C12 |
C11 |
CL1 |
118.9 |
119.8 |
C11 |
C12 |
C13 |
119.0 |
119.8 |
C11 |
C12 |
H12 |
120.5 |
120.1 |
C12 |
C13 |
N14 |
134.3 |
133.6 |
C13 |
C12 |
H12 |
120.5 |
120.1 |
C13 |
N14 |
C15 |
108.2 |
109.7 |
N14 |
C15 |
C16 |
124.8 |
124.9 |
N14 |
C15 |
N9 |
110.4 |
110.1 |
C16 |
C15 |
N9 |
124.7 |
125.0 |
C15 |
C16 |
C14 |
107.7 |
109.5 |
C15 |
C16 |
H161 |
109.9 |
109.5 |
C15 |
C16 |
H162 |
109.9 |
109.5 |
C15 |
N9 |
HA |
125.5 |
126.4 |
C16 |
C14 |
C17 |
|
109.5 |
C16 |
C14 |
H14 |
113.2 |
109.5 |
C14 |
C16 |
H161 |
109.9 |
109.5 |
C14 |
C16 |
H162 |
109.9 |
109.4 |
C14 |
C17 |
C18 |
|
109.5 |
C17 |
C14 |
H14 |
|
109.4 |
C14 |
C17 |
H171 |
|
109.4 |
C14 |
C17 |
H172 |
|
109.5 |
C17 |
C18 |
O1 |
|
120.0 |
C17 |
C18 |
O2 |
|
120.0 |
C18 |
C17 |
H171 |
|
109.5 |
C18 |
C17 |
H172 |
|
109.5 |
O1 |
C18 |
O2 |
|
120.0 |
C18 |
O1 |
HO1 |
|
117.0 |
H161 |
C16 |
H162 |
109.5 |
109.5 |
H171 |
C17 |
H172 |
|
109.5 |
Torsion Angles for A06
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
C14 |
179.7 |
180.3 |
C6 |
C1 |
C2 |
C3 |
0.3 |
0.0 |
C6 |
C1 |
C2 |
H2 |
180.2 |
180.0 |
C6 |
C1 |
C14 |
C16 |
146.0 |
240.0 |
C6 |
C1 |
C14 |
C17 |
|
120.0 |
C6 |
C1 |
C14 |
H14 |
272.0 |
0.1 |
C1 |
C6 |
C5 |
C4 |
0.0 |
0.0 |
C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
H5 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
C14 |
180.3 |
179.7 |
C2 |
C1 |
C6 |
C5 |
359.8 |
0.0 |
C2 |
C1 |
C6 |
H6 |
179.8 |
180.0 |
C2 |
C1 |
C14 |
C16 |
326.3 |
59.7 |
C2 |
C1 |
C14 |
C17 |
|
299.7 |
C2 |
C1 |
C14 |
H14 |
92.3 |
179.8 |
C4 |
C3 |
C2 |
C1 |
359.8 |
359.9 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
H3 |
179.8 |
180.0 |
C6 |
C1 |
C14 |
C2 |
179.7 |
180.3 |
C14 |
C1 |
C6 |
C5 |
180.1 |
179.7 |
C14 |
C1 |
C6 |
H6 |
0.1 |
359.7 |
C14 |
C1 |
C2 |
C3 |
179.9 |
180.3 |
C14 |
C1 |
C2 |
H2 |
359.9 |
0.3 |
C15 |
C16 |
C14 |
C1 |
293.9 |
174.2 |
C16 |
C14 |
C1 |
C17 |
|
120.0 |
C16 |
C14 |
C1 |
H14 |
234.0 |
240.0 |
C1 |
C14 |
C16 |
H161 |
174.2 |
54.1 |
C1 |
C14 |
C16 |
H162 |
53.6 |
294.2 |
C1 |
C14 |
C17 |
C18 |
|
294.3 |
C17 |
C14 |
C1 |
H14 |
|
119.9 |
C1 |
C14 |
C17 |
H171 |
|
54.3 |
C1 |
C14 |
C17 |
H172 |
|
174.3 |
C5 |
C6 |
C1 |
C2 |
359.8 |
0.0 |
C5 |
C6 |
C1 |
C14 |
180.1 |
179.7 |
C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
C3 |
0.1 |
359.9 |
C6 |
C5 |
C4 |
CL2 |
180.2 |
180.0 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.9 |
C3 |
C4 |
C5 |
CL2 |
179.9 |
180.0 |
C5 |
C4 |
C3 |
C2 |
0.0 |
0.1 |
C5 |
C4 |
C3 |
H3 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
C4 |
359.8 |
359.9 |
C5 |
C4 |
C3 |
CL2 |
180.1 |
180.0 |
C3 |
C4 |
C5 |
H5 |
180.0 |
180.0 |
C4 |
C3 |
C2 |
H2 |
179.8 |
180.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
C5 |
C4 |
CL2 |
C3 |
179.9 |
180.0 |
CL2 |
C4 |
C5 |
H5 |
0.2 |
0.0 |
CL2 |
C4 |
C3 |
C2 |
179.9 |
180.1 |
CL2 |
C4 |
C3 |
H3 |
359.9 |
359.9 |
C3 |
C2 |
C1 |
C14 |
179.9 |
180.3 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
CL2 |
179.9 |
180.1 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
C13 |
C8 |
C9 |
N9 |
179.9 |
180.3 |
C9 |
C8 |
C13 |
C12 |
0.3 |
0.0 |
C9 |
C8 |
C13 |
N14 |
180.2 |
180.0 |
C9 |
C8 |
N9 |
C15 |
179.5 |
179.9 |
C9 |
C8 |
N9 |
HA |
359.5 |
0.0 |
C8 |
C9 |
C10 |
C11 |
360.0 |
0.1 |
C10 |
C9 |
C8 |
H9 |
180.0 |
179.9 |
C8 |
C9 |
C10 |
H10 |
179.9 |
179.9 |
C9 |
C8 |
C13 |
N9 |
180.1 |
179.8 |
C13 |
C8 |
C9 |
C10 |
359.7 |
360.0 |
C13 |
C8 |
C9 |
H9 |
179.7 |
180.0 |
C13 |
C8 |
N9 |
C15 |
359.6 |
359.6 |
C13 |
C8 |
N9 |
HA |
179.6 |
179.7 |
C11 |
C12 |
C13 |
C8 |
360.0 |
0.0 |
C12 |
C13 |
C8 |
N14 |
180.2 |
180.0 |
C8 |
C13 |
C12 |
H12 |
179.9 |
180.0 |
C8 |
C13 |
N14 |
C15 |
0.3 |
0.0 |
C9 |
C8 |
N9 |
C13 |
179.9 |
180.3 |
N9 |
C8 |
C9 |
C10 |
179.8 |
179.6 |
N9 |
C8 |
C9 |
H9 |
359.8 |
359.7 |
N9 |
C8 |
C13 |
C12 |
180.2 |
180.3 |
N9 |
C8 |
C13 |
N14 |
0.1 |
0.2 |
N14 |
C15 |
N9 |
C8 |
0.6 |
0.4 |
C16 |
C15 |
N9 |
C8 |
179.8 |
180.1 |
C15 |
N9 |
C8 |
HA |
180.0 |
179.9 |
C10 |
C9 |
C8 |
C13 |
359.7 |
360.0 |
C10 |
C9 |
C8 |
N9 |
179.8 |
179.6 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.1 |
C9 |
C10 |
C11 |
C12 |
0.3 |
360.0 |
C9 |
C10 |
C11 |
CL1 |
180.2 |
179.9 |
C11 |
C10 |
C9 |
H10 |
180.0 |
180.1 |
C11 |
C10 |
C9 |
H9 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
H10 |
180.0 |
179.9 |
C12 |
C11 |
C10 |
CL1 |
180.1 |
180.0 |
C10 |
C11 |
C12 |
C13 |
359.7 |
0.0 |
C10 |
C11 |
C12 |
H12 |
179.7 |
180.0 |
C8 |
C13 |
C12 |
C11 |
360.0 |
0.0 |
C10 |
C11 |
C12 |
CL1 |
179.9 |
180.0 |
C12 |
C11 |
C10 |
H10 |
180.4 |
180.1 |
C11 |
C12 |
C13 |
N14 |
180.2 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
C10 |
C11 |
CL1 |
C12 |
180.1 |
180.0 |
CL1 |
C11 |
C10 |
H10 |
0.2 |
0.0 |
CL1 |
C11 |
C12 |
C13 |
179.8 |
180.0 |
CL1 |
C11 |
C12 |
H12 |
359.8 |
0.0 |
C12 |
C13 |
C8 |
N9 |
180.2 |
180.3 |
C8 |
C13 |
C12 |
N14 |
179.8 |
180.0 |
C13 |
C12 |
C11 |
CL1 |
179.8 |
180.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
C12 |
C13 |
N14 |
C15 |
180.1 |
180.0 |
N14 |
C13 |
C8 |
N9 |
0.1 |
0.2 |
C8 |
C13 |
N14 |
C12 |
180.2 |
180.0 |
N14 |
C13 |
C12 |
H12 |
0.2 |
0.0 |
C13 |
N14 |
C15 |
C16 |
180.3 |
180.0 |
C13 |
N14 |
C15 |
N9 |
359.4 |
359.7 |
C8 |
N9 |
C15 |
N14 |
0.6 |
0.4 |
C16 |
C15 |
N14 |
N9 |
180.8 |
180.3 |
N14 |
C15 |
C16 |
C14 |
134.1 |
303.1 |
N14 |
C15 |
C16 |
H161 |
253.8 |
63.1 |
N14 |
C15 |
C16 |
H162 |
14.4 |
183.2 |
N14 |
C15 |
N9 |
HA |
180.6 |
180.3 |
C1 |
C14 |
C16 |
C15 |
293.9 |
174.2 |
C8 |
N9 |
C15 |
C16 |
179.8 |
180.1 |
N14 |
C15 |
C16 |
N9 |
179.0 |
179.6 |
C16 |
C15 |
N9 |
HA |
359.8 |
0.0 |
C15 |
C16 |
C14 |
C17 |
|
294.2 |
C15 |
C16 |
C14 |
H14 |
167.5 |
54.2 |
C14 |
C16 |
C15 |
H161 |
240.3 |
240.0 |
C14 |
C16 |
C15 |
H162 |
119.7 |
120.0 |
H161 |
C16 |
C15 |
H162 |
239.4 |
240.0 |
C8 |
N9 |
C15 |
HA |
180.0 |
180.1 |
N14 |
C15 |
N9 |
C16 |
180.8 |
180.3 |
N9 |
C15 |
C16 |
C14 |
315.1 |
123.5 |
N9 |
C15 |
C16 |
H161 |
74.8 |
243.5 |
N9 |
C15 |
C16 |
H162 |
195.4 |
3.5 |
C1 |
C14 |
C16 |
C17 |
|
240.0 |
C1 |
C14 |
C16 |
H14 |
126.4 |
120.0 |
C14 |
C16 |
C15 |
N9 |
315.1 |
123.5 |
C15 |
C16 |
C14 |
H161 |
119.7 |
120.1 |
C15 |
C16 |
C14 |
H162 |
240.3 |
240.0 |
C16 |
C14 |
C17 |
C18 |
|
174.2 |
C17 |
C14 |
C16 |
H14 |
|
240.1 |
C16 |
C14 |
C17 |
H171 |
|
294.2 |
C16 |
C14 |
C17 |
H172 |
|
54.2 |
H161 |
C16 |
C14 |
H162 |
120.6 |
120.0 |
C1 |
C14 |
C17 |
C16 |
|
120.1 |
C1 |
C14 |
C17 |
H14 |
|
240.0 |
C16 |
C14 |
C17 |
H14 |
|
120.0 |
C17 |
C14 |
C16 |
H161 |
|
174.2 |
C17 |
C14 |
C16 |
H162 |
|
54.2 |
C14 |
C17 |
C18 |
O1 |
|
174.1 |
C14 |
C17 |
C18 |
O2 |
|
354.0 |
C18 |
C17 |
C14 |
H171 |
|
240.0 |
C18 |
C17 |
C14 |
H172 |
|
120.0 |
H171 |
C17 |
C14 |
H172 |
|
240.0 |
C18 |
C17 |
C14 |
H14 |
|
54.3 |
C14 |
C17 |
C18 |
H171 |
|
119.9 |
C14 |
C17 |
C18 |
H172 |
|
240.0 |
O1 |
C18 |
C17 |
O2 |
|
180.0 |
C17 |
C18 |
O1 |
HO1 |
|
180.0 |
H171 |
C17 |
C18 |
H172 |
|
120.0 |
C17 |
C18 |
O1 |
O2 |
|
180.0 |
O1 |
C18 |
C17 |
H171 |
|
54.1 |
O1 |
C18 |
C17 |
H172 |
|
294.1 |
C17 |
C18 |
O2 |
O1 |
|
180.0 |
O2 |
C18 |
C17 |
H171 |
|
234.1 |
O2 |
C18 |
C17 |
H172 |
|
114.0 |
O2 |
C18 |
O1 |
HO1 |
|
0.0 |
C1 |
C14 |
H14 |
C16 |
237.2 |
239.9 |
C1 |
C14 |
H14 |
C17 |
|
120.0 |
C16 |
C14 |
H14 |
C17 |
|
240.0 |
H14 |
C14 |
C16 |
H161 |
47.8 |
294.1 |
H14 |
C14 |
C16 |
H162 |
287.2 |
174.1 |
H14 |
C14 |
C17 |
C18 |
|
54.3 |
H14 |
C14 |
C17 |
H171 |
|
174.2 |
H14 |
C14 |
C17 |
H172 |
|
294.2 |
H6 |
C6 |
C1 |
C2 |
179.8 |
180.0 |
H6 |
C6 |
C1 |
C14 |
0.1 |
359.7 |
C1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
C4 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
H5 |
0.0 |
360.0 |
H2 |
C2 |
C1 |
C14 |
359.9 |
0.3 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
H3 |
359.8 |
0.1 |
C6 |
C5 |
H5 |
C4 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
H6 |
0.0 |
360.0 |
H5 |
C5 |
C4 |
C3 |
180.0 |
180.0 |
H5 |
C5 |
C4 |
CL2 |
0.2 |
0.0 |
H3 |
C3 |
C4 |
CL2 |
359.9 |
359.9 |
C4 |
C3 |
H3 |
C2 |
180.0 |
180.1 |
H3 |
C3 |
C2 |
H2 |
359.8 |
0.1 |
H9 |
C9 |
C8 |
C13 |
179.7 |
180.0 |
H9 |
C9 |
C8 |
N9 |
359.8 |
359.7 |
C8 |
C9 |
H9 |
C10 |
180.0 |
179.9 |
H9 |
C9 |
C10 |
C11 |
180.0 |
180.0 |
H9 |
C9 |
C10 |
H10 |
360.0 |
359.9 |
C8 |
N9 |
HA |
C15 |
180.0 |
179.9 |
C9 |
C10 |
H10 |
C11 |
180.0 |
180.1 |
H10 |
C10 |
C9 |
H9 |
360.0 |
359.9 |
H10 |
C10 |
C11 |
C12 |
180.4 |
180.1 |
H10 |
C10 |
C11 |
CL1 |
0.2 |
0.0 |
H12 |
C12 |
C11 |
CL1 |
359.8 |
0.0 |
C11 |
C12 |
H12 |
C13 |
180.0 |
180.0 |
H12 |
C12 |
C13 |
N14 |
0.2 |
0.0 |
H161 |
C16 |
C15 |
N9 |
74.8 |
243.5 |
C15 |
C16 |
H161 |
C14 |
241.7 |
240.0 |
C15 |
C16 |
H161 |
H162 |
120.8 |
120.0 |
H161 |
C16 |
C14 |
C17 |
|
174.2 |
H161 |
C16 |
C14 |
H14 |
47.8 |
294.1 |
C14 |
C16 |
H161 |
H162 |
239.2 |
240.1 |
H162 |
C16 |
C15 |
N9 |
195.4 |
3.5 |
C15 |
C16 |
H162 |
C14 |
118.3 |
120.0 |
C15 |
C16 |
H162 |
H161 |
239.2 |
239.9 |
H162 |
C16 |
C14 |
C17 |
|
54.2 |
H162 |
C16 |
C14 |
H14 |
287.2 |
174.1 |
C14 |
C16 |
H162 |
H161 |
120.8 |
120.0 |
C14 |
C17 |
H171 |
C18 |
|
240.0 |
H171 |
C17 |
C14 |
H14 |
|
174.2 |
C14 |
C17 |
H171 |
H172 |
|
120.0 |
H171 |
C17 |
C18 |
O1 |
|
54.1 |
H171 |
C17 |
C18 |
O2 |
|
234.1 |
C18 |
C17 |
H171 |
H172 |
|
240.0 |
C14 |
C17 |
H172 |
C18 |
|
120.0 |
H172 |
C17 |
C14 |
H14 |
|
294.2 |
C14 |
C17 |
H172 |
H171 |
|
240.0 |
H172 |
C17 |
C18 |
O1 |
|
294.1 |
H172 |
C17 |
C18 |
O2 |
|
114.0 |
C18 |
C17 |
H172 |
H171 |
|
120.0 |
HO1 |
O1 |
C18 |
O2 |
|
0.0 |