PDB Chemical Component A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for A

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.598 1.609
OP3 HOP3 0.950 0.967
P OP1 1.439 1.479
P OP2 1.512 1.609
P O5' 1.555 1.610
OP2 HOP2 0.950 0.966
O5' C5' 1.377 1.427
C5' C4' 1.523 1.529
C5' H5' 1.115 1.090
C5' H5'' 1.114 1.090
C4' O4' 1.432 1.444
C4' C3' 1.517 1.544
C4' H4' 1.115 1.091
O4' C1' 1.457 1.443
C3' O3' 1.417 1.428
C3' C2' 1.517 1.545
C3' H3' 1.115 1.090
O3' HO3' 0.950 0.967
C2' O2' 1.386 1.429
C2' C1' 1.477 1.545
C2' H2' 1.114 1.090
O2' HO2' 0.950 0.967
C1' N9 1.492 1.464
C1' H1' 1.115 1.090
N9 C8 1.411 1.363
N9 C4 1.386 1.372
C8 N7 1.355 1.301
C8 H8 1.104 1.080
N7 C5 1.343 1.354
C5 C6 1.413 1.405
C5 C4 1.408 1.405
C6 N6 1.309 1.384
C6 N1 1.399 1.328
N6 H61 1.020 0.970
N6 H62 1.020 0.970
N1 C2 1.262 1.320
C2 N3 1.369 1.316
C2 H2 1.103 1.080
N3 C4 1.290 1.328

Bond Angles for A

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.3 106.8
OP3 P OP1 109.3 109.5
OP3 P OP2 110.9 109.4
OP3 P O5' 94.7 109.5
OP1 P OP2 117.1 109.5
OP1 P O5' 113.5 109.5
OP2 P O5' 109.2 109.4
P OP2 HOP2 117.1 106.9
P O5' C5' 116.6 106.9
O5' C5' C4' 107.9 109.5
O5' C5' H5' 112.8 109.5
O5' C5' H5'' 112.7 109.5
C4' C5' H5' 112.8 109.5
C4' C5' H5'' 112.8 109.4
C5' C4' O4' 111.0 110.4
C5' C4' C3' 114.0 110.5
C5' C4' H4' 103.7 110.2
H5' C5' H5'' 97.7 109.4
O4' C4' C3' 104.1 104.8
O4' C4' H4' 113.6 110.4
C4' O4' C1' 108.5 105.3
C3' C4' H4' 110.7 110.3
C4' C3' O3' 111.4 110.6
C4' C3' C2' 102.9 104.1
C4' C3' H3' 113.8 110.5
O4' C1' C2' 107.5 104.9
O4' C1' N9 103.5 110.4
O4' C1' H1' 117.5 110.4
O3' C3' C2' 113.0 110.5
O3' C3' H3' 103.9 110.4
C3' O3' HO3' 111.4 106.8
C2' C3' H3' 112.3 110.6
C3' C2' O2' 108.5 110.6
C3' C2' C1' 100.2 104.0
C3' C2' H2' 116.9 110.5
O2' C2' C1' 112.3 110.8
O2' C2' H2' 105.7 110.5
C2' O2' HO2' 108.5 106.8
C1' C2' H2' 113.4 110.3
C2' C1' N9 117.3 110.4
C2' C1' H1' 103.8 110.3
N9 C1' H1' 107.8 110.3
C1' N9 C8 129.3 126.3
C1' N9 C4 123.3 126.3
C8 N9 C4 107.5 107.4
N9 C8 N7 110.8 110.0
N9 C8 H8 126.3 125.0
N9 C4 C5 103.3 106.0
N9 C4 N3 131.2 134.9
N7 C8 H8 123.0 125.0
C8 N7 C5 104.5 109.5
N7 C5 C6 128.7 134.7
N7 C5 C4 114.0 107.1
C6 C5 C4 117.3 118.1
C5 C6 N6 125.3 120.7
C5 C6 N1 115.7 118.5
C5 C4 N3 125.5 119.1
N6 C6 N1 119.0 120.8
C6 N6 H61 125.3 120.0
C6 N6 H62 106.6 120.0
C6 N1 C2 120.3 121.1
H61 N6 H62 106.7 120.0
N1 C2 N3 127.8 122.5
N1 C2 H2 111.4 118.7
N3 C2 H2 120.8 118.8
C2 N3 C4 113.5 120.6

Torsion Angles for A

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 130.5 240.0
OP1 P OP3 O5' 243.1 120.0
OP2 P OP3 O5' 112.6 240.0
OP3 P OP2 HOP2 306.3 60.0
OP3 P O5' C5' 153.5 180.0
HOP3 OP3 P OP1 180.0 300.0
HOP3 OP3 P OP2 49.5 60.1
HOP3 OP3 P O5' 296.9 180.0
OP1 P OP3 HOP3 180.0 300.0
OP3 P OP1 OP2 232.9 120.0
OP3 P OP1 O5' 104.2 239.9
OP2 P OP1 O5' 231.3 120.0
OP1 P OP2 HOP2 180.0 180.1
OP1 P O5' C5' 266.8 60.0
OP2 P OP3 HOP3 49.5 60.1
OP3 P OP2 OP1 126.3 240.0
OP3 P OP2 O5' 257.0 120.0
OP1 P OP2 O5' 130.7 240.0
OP2 P O5' C5' 39.4 300.0
O5' P OP3 HOP3 296.9 180.0
OP3 P O5' OP1 246.6 120.0
OP3 P O5' OP2 114.0 240.1
OP1 P O5' OP2 227.4 120.0
O5' P OP2 HOP2 49.3 300.1
P O5' C5' C4' 180.5 180.1
P O5' C5' H5' 305.8 60.0
P O5' C5' H5'' 55.2 300.0
HOP2 OP2 P O5' 49.3 300.1
C4' C5' O5' H5' 234.7 120.1
C4' C5' O5' H5'' 125.3 240.0
O5' C5' C4' O4' 65.3 61.4
O5' C5' C4' C3' 182.5 177.0
O5' C5' C4' H4' 302.9 299.2
H5' C5' O5' H5'' 250.5 119.9
O5' C5' C4' H5' 125.2 239.9
O5' C5' C4' H5'' 234.8 120.0
H5' C5' C4' H5'' 109.5 240.1
O4' C4' C5' C3' 242.8 244.5
O4' C4' C5' H4' 122.4 122.3
C5' C4' O4' C1' 137.8 159.5
C3' C4' C5' H4' 239.6 237.8
C5' C4' C3' O3' 83.0 98.3
C5' C4' C3' C2' 204.3 217.0
C5' C4' C3' H3' 326.0 335.7
O5' C5' H5' C4' 237.4 120.1
O5' C5' H5' H5'' 118.7 240.0
C4' C5' H5' H5'' 241.2 119.9
H5' C5' C4' O4' 300.1 181.5
H5' C5' C4' C3' 57.2 297.0
H5' C5' C4' H4' 177.7 59.2
O5' C5' H5'' C4' 122.6 240.0
O5' C5' H5'' H5' 241.3 120.0
C4' C5' H5'' H5' 118.7 240.0
H5'' C5' C4' O4' 190.6 301.4
H5'' C5' C4' C3' 307.7 57.0
H5'' C5' C4' H4' 68.2 179.2
O4' C4' C5' H5' 300.1 181.5
O4' C4' C5' H5'' 190.6 301.4
C5' C4' O4' C3' 123.0 119.1
C5' C4' O4' H4' 243.5 237.8
C3' C4' O4' H4' 120.5 118.8
O4' C4' C3' O3' 204.1 217.3
O4' C4' C3' C2' 325.4 336.0
O4' C4' C3' H3' 87.1 94.7
C4' O4' C1' C2' 11.3 319.6
C4' O4' C1' N9 246.5 200.7
C4' O4' C1' H1' 127.9 78.4
C3' C4' C5' H5' 57.2 297.0
C3' C4' C5' H5'' 307.7 57.0
C5' C4' C3' O4' 238.9 241.0
C5' C4' C3' H4' 116.5 122.2
O4' C4' C3' H4' 237.6 241.1
C3' C4' O4' C1' 14.8 40.5
O3' C3' C4' C2' 238.7 241.3
O3' C3' C4' H3' 117.0 122.6
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 238.3 241.3
C4' C3' C2' O2' 282.4 241.2
C4' C3' C2' C1' 40.3 0.1
C4' C3' C2' H2' 163.1 118.5
H4' C4' C5' H5' 177.7 59.2
H4' C4' C5' H5'' 68.2 179.2
C5' C4' H4' O4' 120.6 122.3
C5' C4' H4' C3' 237.4 237.7
O4' C4' H4' C3' 116.7 115.4
H4' C4' O4' C1' 254.3 281.7
H4' C4' C3' O3' 326.5 336.1
H4' C4' C3' C2' 87.8 94.8
H4' C4' C3' H3' 209.5 213.5
C1' O4' C4' C3' 14.8 40.5
C1' O4' C4' H4' 254.3 281.7
C3' C2' C1' O4' 327.9 23.8
O2' C2' C1' O4' 82.9 142.6
O4' C1' C2' H2' 202.6 265.3
C2' C1' O4' N9 124.8 119.0
C2' C1' O4' H1' 243.5 241.2
N9 C1' O4' H1' 118.6 122.2
O4' C1' N9 C8 9.9 27.1
O4' C1' N9 C4 189.7 207.0
O3' C3' C4' H4' 326.5 336.1
C4' C3' O3' C2' 115.2 114.7
C4' C3' O3' H3' 237.1 237.4
C2' C3' O3' H3' 121.9 122.7
O3' C3' C2' O2' 42.6 359.9
O3' C3' C2' C1' 160.5 118.9
O3' C3' C2' H2' 283.3 237.3
C2' C3' C4' H4' 87.8 94.8
C4' C3' C2' O3' 239.8 241.2
C4' C3' C2' H3' 122.7 118.6
O4' C1' C2' C3' 327.9 23.8
O3' C3' C2' H3' 242.9 237.4
C2' C3' O3' HO3' 64.8 65.3
O2' C2' C3' C1' 242.2 241.0
O2' C2' C3' H2' 119.3 122.6
C3' C2' O2' HO2' 179.9 298.5
C1' C2' C3' H2' 237.1 241.6
C3' C2' C1' N9 83.9 142.8
C3' C2' C1' H1' 202.7 264.9
H3' C3' C4' H4' 209.5 213.5
C4' C3' H3' O3' 121.3 122.7
C4' C3' H3' C2' 243.7 245.3
O3' C3' H3' C2' 122.4 122.7
H3' C3' O3' HO3' 302.9 302.6
H3' C3' C2' O2' 159.7 122.5
H3' C3' C2' C1' 277.6 241.5
H3' C3' C2' H2' 40.4 359.9
HO3' O3' C3' C2' 64.8 65.3
HO3' O3' C3' H3' 302.9 302.6
O4' C1' C2' O2' 82.9 142.6
O2' C2' C3' H3' 159.7 122.5
C3' C2' O2' C1' 109.8 114.8
C3' C2' O2' H2' 233.9 237.3
C1' C2' O2' H2' 124.1 122.6
O2' C2' C1' N9 198.9 261.6
O2' C2' C1' H1' 317.6 23.7
O4' C1' C2' N9 244.0 241.1
O4' C1' C2' H1' 125.2 118.9
C1' C2' C3' H3' 277.6 241.5
C3' C2' C1' O2' 245.0 241.2
C3' C2' C1' H2' 125.3 118.6
O2' C2' C1' H2' 240.3 237.4
C1' C2' O2' HO2' 70.1 183.8
N9 C1' C2' H1' 241.3 237.8
C2' C1' N9 C8 251.7 271.5
C2' C1' N9 C4 71.5 91.5
H2' C2' C3' H3' 40.4 359.9
C3' C2' H2' O2' 120.8 122.7
C3' C2' H2' C1' 244.2 245.5
O2' C2' H2' C1' 123.4 122.8
H2' C2' O2' HO2' 306.0 61.2
H2' C2' C1' N9 318.6 24.2
H2' C2' C1' H1' 77.3 146.4
HO2' O2' C2' C1' 70.1 183.8
HO2' O2' C2' H2' 306.0 61.2
O4' C1' N9 C2' 118.2 115.5
O4' C1' N9 H1' 234.8 237.7
N9 C1' C2' H2' 318.6 24.2
C2' C1' N9 H1' 116.6 122.2
C8 N9 C1' C4 180.2 180.0
C1' N9 C8 N7 180.0 180.0
C1' N9 C8 H8 0.0 0.0
C1' N9 C4 C5 180.2 180.2
C1' N9 C4 N3 359.9 0.1
O4' C1' H1' C2' 241.5 244.5
O4' C1' H1' N9 116.4 122.3
H1' C1' C2' H2' 77.3 146.4
C2' C1' H1' N9 234.9 237.8
H1' C1' N9 C8 135.1 149.4
H1' C1' N9 C4 314.9 329.3
C8 N9 C1' H1' 135.1 149.4
C1' N9 C8 C4 179.9 180.0
C8 N9 C4 C5 0.0 0.2
C8 N9 C4 N3 179.8 180.0
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.7 359.7
C4 N9 C1' H1' 314.9 329.3
C1' N9 C4 C8 180.1 180.0
C4 N9 C8 N7 0.2 0.0
C4 N9 C8 H8 180.2 180.0
N7 C5 C4 N9 359.7 359.6
C6 C5 C4 N9 180.2 180.4
C5 C4 N9 N3 180.2 180.2
C2 N3 C4 N9 180.0 179.9
N7 C8 N9 C4 0.2 0.0
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 179.8 179.4
C8 N7 C5 C4 0.4 0.4
H8 C8 N9 C4 180.2 180.0
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.7 179.7
N9 C4 C5 N7 359.7 359.6
C5 N7 C8 H8 179.7 179.7
C6 C5 N7 C4 179.5 179.1
N7 C5 C6 N6 0.4 0.8
N7 C5 C6 N1 180.3 180.5
N7 C5 C4 N3 180.0 179.8
N9 C4 C5 C6 180.2 180.4
N7 C5 C6 C4 180.6 181.0
C6 C5 C4 N3 0.4 0.5
N6 C6 C5 N1 180.1 180.3
C5 C6 N6 H61 180.0 179.7
C5 C6 N6 H62 54.7 359.5
C5 C6 N1 C2 0.1 0.3
N9 C4 C5 N3 179.8 179.9
N7 C5 C4 C6 179.5 179.2
C4 C5 C6 N6 179.8 179.7
C4 C5 C6 N1 359.7 359.4
C2 N3 C4 C5 359.7 359.8
N6 C6 C5 C4 179.8 179.7
C5 C6 N6 N1 179.8 179.7
N6 C6 N1 C2 179.9 180.0
H61 N6 C6 H62 125.4 180.2
N1 C6 C5 C4 359.7 359.4
C5 C6 N1 N6 180.1 180.3
N1 C6 N6 H61 0.2 360.0
N1 C6 N6 H62 234.8 179.8
C6 N1 C2 N3 0.1 360.0
C6 N1 C2 H2 180.1 179.9
H61 N6 C6 N1 0.2 360.0
C6 N6 H61 H62 234.7 179.8
H62 N6 C6 N1 234.8 179.8
C6 N6 H62 H61 136.0 180.2
N3 C2 N1 H2 180.0 180.0
N1 C2 N3 C4 360.0 360.0
N9 C4 N3 C2 180.0 179.9
C5 C4 N3 C2 359.7 359.8
N1 C2 N3 H2 180.0 180.0
N1 C2 H2 N3 180.0 180.0
H2 C2 N3 C4 180.0 180.0
N9 C4 N3 C5 180.3 180.2
C4 N3 C2 H2 180.0 180.0