PDB Chemical Component 9ZQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 9ZQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C44 C17 1.524 1.509
C17 C16 1.414 1.361
C17 C18 1.397 1.395
C16 C15 1.409 1.407
C39 C18 1.529 1.509
C18 C14 1.417 1.361
C15 N3 1.390 1.332
C15 C13 1.404 1.461
N3 C6 1.358 1.324
C14 C13 1.407 1.408
C13 N4 1.387 1.332
C4 C3 1.407 1.382
C4 C5 1.403 1.394
C3 C2 1.412 1.385
C6 C5 1.432 1.472
C6 C7 1.423 1.421
C5 C1 1.425 1.414
N4 C7 1.390 1.322
C7 C8 1.425 1.475
C2 N2 1.394 1.328
C1 N2 1.414 1.316
C1 C10 1.391 1.444
N2 RU 1.848 2.035
C8 C10 1.437 1.415
C8 C9 1.396 1.392
C10 N1 1.372 1.314
C20 C21 1.425 1.391
C20 N5 1.331 1.322
C21 C43 1.401 1.368
C9 C11 1.395 1.381
C37 C38 1.428 1.390
C37 C41 1.410 1.368
C38 N12 1.350 1.324
C41 C35 1.404 1.403
N5 RU 1.947 2.040
N5 C19 1.359 1.309
C35 C36 1.432 1.414
C35 C34 1.423 1.414
N12 RU 1.942 2.034
N12 C36 1.369 1.311
RU N1 1.952 2.032
RU N9 1.952 2.032
RU N8 1.870 2.035
N1 C12 1.346 1.326
C36 C29 1.413 1.439
C34 C33 1.399 1.354
C43 C22 1.365 1.401
C29 N9 1.372 1.317
C29 C32 1.436 1.416
N9 C30 1.331 1.321
C33 C32 1.428 1.414
C32 C40 1.377 1.403
C30 C31 1.430 1.392
C40 C31 1.395 1.369
C11 C12 1.432 1.384
C19 C22 1.452 1.417
C19 C26 1.398 1.437
C22 C23 1.404 1.414
N8 C26 1.440 1.315
N8 C28 1.402 1.324
C26 C25 1.437 1.416
C23 C24 1.375 1.354
C28 C27 1.409 1.389
C25 C24 1.451 1.412
C25 C42 1.393 1.401
C27 C42 1.455 1.369
C37 H1 1.080 1.080
C38 H2 1.080 1.082
C41 H3 1.080 1.076
C34 H4 1.080 1.082
C33 H5 1.080 1.083
C40 H6 1.080 1.076
C31 H7 1.080 1.080
C30 H8 1.080 1.084
C12 H9 1.081 1.083
C11 H10 1.080 1.079
C9 H11 1.080 1.076
C28 H12 1.080 1.083
C27 H13 1.080 1.081
C42 H14 1.080 1.077
C24 H15 1.080 1.083
C23 H16 1.080 1.082
C43 H17 1.079 1.077
C21 H18 1.080 1.080
C20 H19 1.080 1.083
C2 H20 1.080 1.083
C3 H21 1.080 1.079
C4 H22 1.080 1.076
C16 H23 1.080 1.079
C14 H24 1.079 1.080
C39 H25 1.100 1.090
C39 H26 1.100 1.090
C39 H27 1.100 1.090
C44 H28 1.100 1.091
C44 H29 1.100 1.090
C44 H30 1.100 1.090

Bond Angles for 9ZQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C17 C16 H23 119.3 120.0
C17 C18 C14 119.2 121.3
C18 C14 H24 119.1 120.0
C4 C3 H21 119.3 120.4
C5 C4 H22 120.8 120.8
C3 C2 H20 118.4 119.3
C8 C9 H11 120.8 120.9
C20 C21 H18 119.6 119.8
C20 N5 C19 115.4 120.6
N5 C20 H19 118.6 119.1
C21 C43 H17 120.9 121.0
C9 C11 H10 119.3 120.4
C38 C37 C41 120.6 120.0
C37 C38 N12 123.2 121.5
C38 C37 H1 119.7 119.9
C37 C38 H2 118.4 119.3
C37 C41 C35 117.4 118.2
C41 C37 H1 119.7 120.2
C37 C41 H3 121.3 121.0
C38 N12 RU 132.1 130.7
C38 N12 C36 115.1 120.7
N12 C38 H2 118.4 119.2
C41 C35 C36 117.7 118.3
C41 C35 C34 119.3 121.9
C35 C41 H3 121.3 120.9
C36 C35 C34 123.0 119.8
C35 C36 C29 118.6 119.2
C35 C34 C33 118.7 121.1
C35 C34 H4 120.6 119.4
N12 RU N1 177.5 177.0
N12 RU N9 84.4 84.2
N12 RU N8 85.9 91.3
N1 RU N8 95.9 91.7
RU N1 C12 132.0 130.5
RU N8 C26 111.4 108.7
RU N8 C28 136.4 131.0
N1 C12 H9 118.9 119.1
C36 C29 N9 116.4 119.3
C36 C29 C32 117.9 118.8
C34 C33 C32 118.8 120.9
C33 C34 H4 120.7 119.4
C34 C33 H5 120.6 119.5
C32 C29 N9 125.8 121.9
C29 N9 C30 116.3 119.9
C29 C32 C33 123.0 120.1
C29 C32 C40 116.8 118.2
N9 C30 H8 119.6 119.0
C33 C32 C40 120.1 121.6
C32 C33 H5 120.6 119.6
C32 C40 C31 117.7 118.0
C32 C40 H6 121.2 121.0
C30 C31 H7 118.8 119.8
C31 C40 H6 121.1 121.1
C40 C31 H7 118.8 120.1
C11 C12 H9 118.9 119.2
C22 C23 H16 119.9 119.5
C28 N8 C26 111.9 120.3
N8 C26 C25 127.2 121.7
N8 C28 C27 123.3 121.5
N8 C28 H12 118.4 119.3
C26 C25 C24 122.5 119.8
C23 C24 H15 120.8 119.2
C28 C27 C42 122.9 120.2
C27 C28 H12 118.3 119.2
C28 C27 H13 118.5 119.7
C25 C24 H15 120.8 119.5
C25 C42 H14 121.9 120.9
C42 C27 H13 118.6 120.0
C27 C42 H14 121.9 121.0
H25 C39 H26 109.4 109.5
H25 C39 H27 109.5 109.5
H26 C39 H27 109.4 109.4
H28 C44 H29 109.4 109.4
H28 C44 H30 109.5 109.4
H29 C44 H30 109.5 109.5

Torsion Angles for 9ZQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C44 C17 C16 H23 1.8 359.1
C18 C17 C16 H23 181.8 179.4
C17 C18 C14 H24 178.1 180.9
C39 C18 C14 H24 357.9 1.1
C4 C3 C2 H20 179.9 181.9
C5 C4 C3 H21 179.6 179.5
C6 C5 C4 H22 359.9 355.1
C7 C8 C9 H11 2.1 4.8
C10 C8 C9 H11 181.3 183.1
C8 C9 C11 H10 177.5 180.6
C10 N1 C12 H9 172.9 179.2
C20 C21 C43 H17 180.0 180.3
N5 C20 C21 H18 183.9 180.0
C9 C11 C12 H9 185.7 177.5
C38 C37 C41 C35 359.0 360.0
C41 C37 C38 H1 180.0 179.7
C38 C37 C41 H3 179.0 179.9
C37 C38 N12 RU 183.2 179.9
C37 C38 N12 C36 352.7 359.9
N12 C38 C37 H2 180.0 180.1
C41 C37 C38 N12 5.5 359.9
C38 C37 C41 H1 180.0 180.3
C41 C37 C38 H2 185.4 179.8
C37 C41 C35 C36 359.1 0.3
C37 C41 C35 C34 180.5 180.3
C35 C41 C37 H3 180.0 180.0
N12 C38 C37 C41 5.5 359.9
N12 C38 C37 H1 185.5 180.2
C37 C38 N12 H2 180.0 179.9
C38 N12 RU N1 130.2 94.2
C38 N12 RU N9 172.3 179.7
C38 N12 RU N8 265.9 272.2
C35 C41 C37 H1 179.0 179.7
C37 C41 C35 H3 180.0 180.0
C36 C35 C41 C34 178.6 179.9
C41 C35 C36 C29 179.3 179.8
C41 C35 C34 C33 178.8 179.9
C41 C35 C34 H4 358.8 360.0
C19 N5 C20 H19 174.3 179.9
C38 N12 C36 C35 5.3 0.3
C41 C35 C36 C34 181.4 180.1
C36 C35 C41 H3 179.1 180.3
C36 C35 C34 C33 0.2 360.0
C36 C35 C34 H4 180.2 180.0
C35 C36 C29 N9 182.5 180.1
C35 C36 C29 C32 3.3 0.3
C41 C35 C34 C36 178.5 179.9
C34 C35 C41 H3 0.5 0.4
C34 C35 C36 C29 357.9 359.7
C35 C34 C33 C32 0.3 0.2
C33 C34 C35 H4 180.0 180.0
C35 C34 C33 H5 180.2 180.2
C38 N12 RU C36 169.8 180.1
RU N12 C38 H2 3.2 360.0
N1 RU N12 N8 224.3 182.0
N12 RU N1 C12 127.8 167.1
N12 RU N8 C26 86.3 91.4
N12 RU N8 C28 273.2 271.5
C38 N12 C36 RU 188.4 179.9
C36 N12 C38 H2 172.8 180.0
N12 C36 C35 C34 177.2 179.5
N12 C36 C29 N9 3.1 0.3
N12 C36 C29 C32 183.9 180.5
N12 RU N1 N9 42.0 85.2
N12 RU N1 N8 135.5 178.0
N1 RU N8 C26 264.6 271.3
N1 RU N8 C28 91.5 91.4
RU N1 C12 H9 356.8 360.0
N12 RU N9 N1 181.7 183.0
N12 RU N9 N8 85.5 91.1
RU N9 C30 H8 2.2 0.9
N12 RU N8 N1 181.7 180.1
N12 RU N8 N9 275.9 275.7
N8 RU N1 C12 352.3 349.1
C28 N8 RU C26 186.9 180.1
RU N8 C26 C25 183.9 179.8
RU N8 C28 C27 175.0 179.9
RU N8 C28 H12 355.0 360.0
C12 N1 RU N8 352.3 349.1
C11 C12 N1 H9 180.0 180.0
C38 N12 C36 C29 184.7 180.1
C29 C36 C35 C34 357.9 359.7
C32 C29 C36 N9 180.8 180.2
C36 C29 N9 C30 184.4 179.7
C36 C29 C32 C33 357.0 359.8
C36 C29 C32 C40 178.5 179.7
C35 C34 C33 H4 180.0 180.0
C29 C32 C33 C34 1.1 359.9
C34 C33 C32 C40 179.6 180.0
C32 C33 C34 H5 180.0 180.0
C43 C22 C23 H16 358.6 0.2
N12 RU N9 C29 359.1 0.5
C36 C29 N9 C32 180.9 180.2
N9 C29 C32 C33 177.9 180.0
N9 C29 C32 C40 359.4 359.9
C29 N9 C30 H8 175.6 180.6
C36 C29 C32 N9 179.1 179.8
C34 C33 C32 C29 1.1 359.9
C32 C29 N9 C30 3.5 359.5
C33 C32 C29 C40 178.5 180.1
C29 C32 C33 H5 181.2 179.9
C29 C32 C40 C31 358.7 0.5
C29 C32 C40 H6 178.7 180.6
N12 RU N9 C30 172.7 180.2
N9 C30 C31 H7 182.8 179.6
C32 C33 C34 H4 180.2 180.1
C34 C33 C32 H5 180.0 180.0
C33 C32 C29 N9 177.9 180.0
C29 C32 C33 C40 181.5 179.9
C33 C32 C40 C31 180.1 180.4
C33 C32 C40 H6 0.1 0.5
C40 C32 C29 N9 359.4 359.9
C29 C32 C40 C33 178.6 180.1
C40 C32 C33 H5 359.6 360.0
C31 C40 C32 H6 180.0 179.9
C32 C40 C31 H7 180.3 179.8
C29 N9 C30 C31 355.6 0.7
C30 C31 C40 H6 180.3 179.6
C40 C31 C30 H7 180.0 180.1
C32 C40 C31 H6 180.0 180.1
C30 C31 C40 H7 180.0 179.9
N1 C12 C11 H9 180.0 180.0
C19 C22 C23 H16 180.0 180.3
C22 C23 C24 H15 179.4 180.0
RU N8 C26 C28 185.1 180.1
C26 N8 C28 C27 1.9 0.0
C26 N8 C28 H12 181.9 180.1
N8 C26 C25 C24 179.8 180.6
RU N8 C28 C26 173.1 179.8
C28 N8 C26 C25 358.7 359.7
N8 C28 C27 C42 357.6 0.1
C27 C28 N8 H12 180.0 179.9
N8 C28 C27 H13 177.6 180.2
C26 C25 C24 H15 181.7 179.6
C26 C25 C42 H14 178.8 179.7
C25 C24 C23 H15 180.0 179.9
C27 C28 N8 C26 1.9 0.0
N8 C28 C27 H12 180.0 180.1
C42 C27 C28 H13 180.0 179.9
C28 C27 C42 H14 181.9 180.1
C23 C24 C25 H15 180.0 180.1
C24 C25 C42 H14 360.0 359.6
N8 C26 C25 C42 1.0 0.5
C25 C42 C27 H13 181.9 179.9
C27 C42 C25 H14 180.0 180.0
C42 C27 C28 H12 177.6 180.0
C28 C27 C42 H13 180.0 180.1
C25 C42 C27 H14 180.0 180.0
C38 C37 H1 C41 180.0 179.7
H1 C37 C38 N12 185.5 180.2
H1 C37 C38 H2 5.4 0.1
H1 C37 C41 C35 179.0 179.7
H1 C37 C41 H3 359.0 359.6
H2 C38 C37 C41 185.4 179.8
C37 C38 H2 N12 180.0 180.1
H2 C38 C37 H1 5.4 0.1
H2 C38 N12 RU 3.2 360.0
H2 C38 N12 C36 172.8 180.0
C37 C41 H3 C35 180.0 180.0
H3 C41 C37 H1 359.0 359.6
H3 C41 C35 C36 179.1 180.3
H3 C41 C35 C34 0.5 0.4
C35 C34 H4 C33 180.0 180.0
H4 C34 C33 C32 180.2 180.1
H4 C34 C33 H5 0.2 0.2
C34 C33 H5 C32 180.0 180.0
H5 C33 C34 H4 0.2 0.2
H5 C33 C32 C40 359.6 360.0
C32 C40 H6 C31 180.0 179.9
H6 C40 C31 H7 0.3 359.7
H7 C31 C40 H6 0.3 359.7
H8 C30 C31 H7 2.8 359.7
H10 C11 C12 H9 5.7 358.3
H11 C9 C11 H10 357.5 0.1
H12 C28 N8 C26 181.9 180.1
N8 C28 H12 C27 180.0 179.9
H12 C28 C27 C42 177.6 180.0
H12 C28 C27 H13 357.6 0.1
C28 C27 H13 C42 180.0 179.9
H13 C27 C28 H12 357.6 0.1
H13 C27 C42 H14 2.0 360.0
H14 C42 C27 H13 2.0 360.0
H16 C23 C24 H15 359.4 0.0
H18 C21 C43 H17 360.0 0.2
H19 C20 C21 H18 3.9 359.9
H19 C20 N5 C19 174.3 179.9
H21 C3 C2 H20 360.0 1.4
H22 C4 C3 H21 359.6 359.5
H26 C39 H25 H27 120.0 119.9
H25 C39 H26 H27 240.0 240.0
H25 C39 H27 H26 119.9 120.0
H29 C44 H28 H30 120.0 120.0
H28 C44 H29 H30 240.0 240.1
H28 C44 H30 H29 119.9 119.9