Atom Nomenclature for 9ZQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 9ZQ

Atom Name (V3) Atom Name (V2)
C37 C1
C38 C2
C41 C3
C35 C4
C36 C5
C29 C6
N12 N1
C34 C7
C33 C8
C32 C9
C40 C10
C31 C11
C30 C12
N9 N2
RU RU1
N1 N3
C12 C13
C11 C14
C9 C15
N8 N4
C28 C16
C27 C17
C42 C18
C26 C19
C25 C20
C24 C21
C23 C22
C22 C23
C43 C24
C21 C25
C20 C26
C19 C27
N5 N5
N2 N6
C1 C28
C10 C29
C8 C30
C2 C31
C3 C32
C4 C33
C5 C34
C6 C35
C7 C36
N4 N7
N3 N8
C15 C37
C13 C38
C16 C39
C17 C40
C18 C41
C14 C42
C39 C43
C44 C44
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30