PDB Chemical Component 9ZA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 9ZA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N6 |
C6 |
1.358 |
1.385 |
| C6 |
N1 |
1.349 |
1.328 |
| C6 |
C5 |
1.462 |
1.406 |
| N1 |
C2 |
1.347 |
1.321 |
| C5 |
N7 |
1.342 |
1.355 |
| C5 |
C4 |
1.452 |
1.405 |
| C2 |
N3 |
1.341 |
1.316 |
| N7 |
C8 |
1.355 |
1.301 |
| C4 |
N3 |
1.350 |
1.329 |
| C4 |
N9 |
1.324 |
1.372 |
| C8 |
N9 |
1.344 |
1.363 |
| N9 |
C1' |
1.469 |
1.465 |
| C1' |
C2' |
1.520 |
1.545 |
| C1' |
O4' |
1.414 |
1.445 |
| O2' |
C2' |
1.430 |
1.430 |
| C2' |
C3' |
1.527 |
1.545 |
| O4' |
C4' |
1.428 |
1.445 |
| C3' |
C4' |
1.534 |
1.546 |
| C3' |
O3' |
1.438 |
1.429 |
| C4' |
C5' |
1.519 |
1.529 |
| C5' |
O5' |
1.423 |
1.430 |
| O5' |
P |
1.602 |
1.610 |
| O10 |
C7 |
1.215 |
1.208 |
| O2P |
P |
1.508 |
1.480 |
| N2 |
P |
1.721 |
1.683 |
| N2 |
C3 |
1.448 |
1.469 |
| P |
O3P |
1.501 |
1.610 |
| C7 |
C3 |
1.483 |
1.507 |
| C7 |
O11 |
1.425 |
1.342 |
| C9 |
C3 |
1.525 |
1.530 |
| C12 |
O11 |
1.429 |
1.452 |
| O3P |
H1 |
0.950 |
0.967 |
| C5' |
H2 |
1.100 |
1.090 |
| C5' |
H3 |
1.100 |
1.090 |
| C4' |
H4 |
1.100 |
1.090 |
| C3' |
H5 |
1.100 |
1.090 |
| O3' |
H6 |
0.950 |
0.967 |
| C2' |
H7 |
1.100 |
1.090 |
| O2' |
H8 |
0.950 |
0.966 |
| C1' |
H9 |
1.100 |
1.089 |
| C8 |
H10 |
1.080 |
1.080 |
| C2 |
H11 |
1.080 |
1.079 |
| N6 |
H12 |
1.000 |
0.971 |
| N6 |
H13 |
1.000 |
0.969 |
| N2 |
H14 |
1.000 |
1.010 |
| C3 |
H15 |
1.100 |
1.090 |
| C9 |
H16 |
1.100 |
1.090 |
| C9 |
H17 |
1.100 |
1.090 |
| C9 |
H18 |
1.100 |
1.090 |
| C12 |
H19 |
1.100 |
1.091 |
| C12 |
H20 |
1.100 |
1.090 |
| C12 |
H21 |
1.100 |
1.090 |
Bond Angles for 9ZA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C2 |
H11 |
118.4 |
118.8 |
| C5 |
N7 |
C8 |
107.5 |
109.4 |
| C5 |
C4 |
N3 |
121.4 |
119.1 |
| N7 |
C8 |
H10 |
125.3 |
125.0 |
| N9 |
C1' |
H9 |
110.3 |
110.4 |
| C1' |
C2' |
H7 |
109.4 |
110.5 |
| O4' |
C1' |
H9 |
111.2 |
110.3 |
| O2' |
C2' |
H7 |
110.7 |
110.4 |
| C2' |
C3' |
H5 |
109.7 |
110.6 |
| O4' |
C4' |
H4 |
110.4 |
110.4 |
| C3' |
C4' |
H4 |
108.9 |
110.4 |
| O3' |
C3' |
H5 |
111.0 |
110.5 |
| C3' |
O3' |
H6 |
109.5 |
113.9 |
| C4' |
C5' |
H2 |
110.0 |
109.5 |
| C4' |
C5' |
H3 |
110.0 |
109.5 |
| O10 |
C7 |
O11 |
119.6 |
120.0 |
| C3 |
N2 |
H14 |
106.7 |
111.0 |
| N2 |
C3 |
H15 |
109.5 |
109.4 |
| P |
O3P |
H1 |
109.5 |
114.0 |
| C7 |
C3 |
H15 |
109.1 |
109.5 |
| C9 |
C3 |
H15 |
108.5 |
109.5 |
| H2 |
C5' |
H3 |
109.5 |
109.5 |
| H12 |
N6 |
H13 |
109.4 |
120.0 |
| H16 |
C9 |
H17 |
109.4 |
109.5 |
| H16 |
C9 |
H18 |
109.5 |
109.5 |
| H17 |
C9 |
H18 |
109.5 |
109.4 |
| H19 |
C12 |
H20 |
109.5 |
109.5 |
| H19 |
C12 |
H21 |
109.5 |
109.4 |
| H20 |
C12 |
H21 |
109.4 |
109.5 |
Torsion Angles for 9ZA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
H11 |
179.9 |
180.2 |
| N7 |
C5 |
C4 |
N3 |
180.4 |
180.0 |
| C5 |
N7 |
C8 |
H10 |
181.4 |
180.0 |
| C4 |
N9 |
C1' |
H9 |
13.4 |
322.7 |
| C8 |
N9 |
C1' |
H9 |
190.8 |
142.3 |
| N9 |
C1' |
C2' |
H7 |
40.4 |
24.1 |
| O4' |
C1' |
N9 |
H9 |
239.2 |
237.8 |
| O2' |
C2' |
C1' |
H7 |
238.0 |
237.4 |
| C1' |
C2' |
C3' |
H5 |
220.8 |
241.3 |
| N9 |
C1' |
O4' |
H9 |
120.3 |
122.3 |
| O4' |
C1' |
C2' |
H7 |
284.3 |
265.3 |
| C1' |
O4' |
C4' |
H4 |
267.9 |
281.5 |
| C1' |
C2' |
O2' |
H7 |
121.3 |
122.7 |
| O2' |
C2' |
C3' |
H5 |
101.5 |
122.5 |
| C2' |
C3' |
C4' |
H4 |
118.4 |
95.0 |
| O3' |
C3' |
C2' |
H5 |
235.6 |
237.3 |
| C2' |
C3' |
O3' |
H6 |
180.0 |
65.3 |
| C3' |
C4' |
O4' |
H4 |
118.7 |
118.9 |
| O4' |
C4' |
C5' |
H2 |
285.2 |
308.0 |
| O4' |
C4' |
C5' |
H3 |
45.8 |
187.9 |
| O4' |
C4' |
C3' |
H4 |
240.4 |
241.1 |
| C3' |
C4' |
C5' |
H2 |
43.8 |
63.5 |
| C3' |
C4' |
C5' |
H3 |
164.4 |
303.4 |
| C2' |
C3' |
O3' |
H5 |
123.7 |
122.8 |
| O3' |
C3' |
C4' |
H4 |
357.5 |
336.3 |
| H2 |
C5' |
C4' |
H3 |
239.4 |
120.1 |
| O5' |
P |
O3P |
H1 |
237.2 |
60.0 |
| O10 |
C7 |
C3 |
H15 |
223.3 |
240.1 |
| O2P |
P |
O3P |
H1 |
360.0 |
180.0 |
| N2 |
P |
O3P |
H1 |
122.2 |
300.0 |
| C7 |
C3 |
N2 |
H15 |
241.6 |
240.0 |
| C9 |
C3 |
N2 |
H15 |
121.8 |
120.0 |
| C7 |
C3 |
N2 |
H14 |
49.3 |
91.0 |
| N2 |
C3 |
C7 |
H15 |
118.7 |
120.0 |
| C9 |
C3 |
C7 |
H15 |
242.3 |
240.0 |
| O11 |
C7 |
C3 |
H15 |
43.0 |
60.0 |
| C9 |
C3 |
N2 |
H14 |
289.5 |
331.0 |
| N2 |
C3 |
C9 |
H15 |
237.7 |
240.0 |
| C7 |
C3 |
C9 |
H15 |
118.1 |
120.1 |
| C4' |
C5' |
H2 |
H3 |
120.9 |
239.9 |
| C4' |
C5' |
H3 |
H2 |
239.1 |
120.1 |
| H4 |
C4' |
C5' |
H2 |
165.6 |
185.7 |
| H4 |
C4' |
C5' |
H3 |
286.3 |
65.6 |
| H5 |
C3' |
C4' |
H4 |
235.4 |
213.7 |
| H5 |
C3' |
O3' |
H6 |
56.4 |
302.6 |
| H6 |
O3' |
C3' |
H5 |
56.4 |
302.6 |
| H7 |
C2' |
C3' |
H5 |
336.2 |
360.0 |
| H8 |
O2' |
C2' |
H7 |
58.7 |
61.2 |
| H9 |
C1' |
C2' |
H7 |
165.0 |
146.5 |
| H14 |
N2 |
C3 |
H15 |
167.7 |
211.0 |
| H15 |
C3 |
N2 |
H14 |
167.7 |
211.0 |
| H16 |
C9 |
C3 |
H15 |
302.4 |
180.0 |
| H17 |
C9 |
H16 |
H18 |
120.0 |
120.0 |
| H17 |
C9 |
C3 |
H15 |
62.3 |
300.0 |
| H16 |
C9 |
H17 |
H18 |
240.0 |
240.0 |
| H18 |
C9 |
C3 |
H15 |
182.3 |
59.9 |
| H16 |
C9 |
H18 |
H17 |
120.0 |
120.0 |
| H20 |
C12 |
H19 |
H21 |
120.0 |
120.0 |
| H19 |
C12 |
H20 |
H21 |
240.0 |
240.0 |
| H19 |
C12 |
H21 |
H20 |
120.0 |
120.0 |